-
1
-
-
3142678124
-
Molecular components of physiological stress responses in Escherichia coli
-
Wick, L. M.; Egli, T. Molecular components of physiological stress responses in Escherichia coli Adv. Biochem. Eng. Biotechnol. 2004, 89, 1-45
-
(2004)
Adv. Biochem. Eng. Biotechnol.
, vol.89
, pp. 1-45
-
-
Wick, L.M.1
Egli, T.2
-
2
-
-
79956076088
-
How sulphate-reducing microorganisms cope with stress: Lessons from systems biology
-
Zhou, J.; He, Q.; Hemme, C. L.; Mukhopadhyay, A.; Hillesland, K.; Zhou, A.; He, Z.; Van Nostrand, J. D.; Hazen, T. C.; Stahl, D. A.; Wall, J. D.; Arkin, A. P. How sulphate-reducing microorganisms cope with stress: Lessons from systems biology Nat. Rev. Microbiol. 2011, 9, 452-466
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 452-466
-
-
Zhou, J.1
He, Q.2
Hemme, C.L.3
Mukhopadhyay, A.4
Hillesland, K.5
Zhou, A.6
He, Z.7
Van Nostrand, J.D.8
Hazen, T.C.9
Stahl, D.A.10
Wall, J.D.11
Arkin, A.P.12
-
4
-
-
0035794713
-
Molecular basis of thermosensing: A two-component signal transduction thermometer in Bacillus subtilis
-
Aguilar, P. S.; Hernandez-Arriaga, A. M.; Cybulski, L. E.; Erazo, A. C.; de Mendoza, D. Molecular basis of thermosensing: A two-component signal transduction thermometer in Bacillus subtilis EMBO J. 2001, 20, 1681-1691
-
(2001)
EMBO J.
, vol.20
, pp. 1681-1691
-
-
Aguilar, P.S.1
Hernandez-Arriaga, A.M.2
Cybulski, L.E.3
Erazo, A.C.4
De Mendoza, D.5
-
5
-
-
0030028240
-
HrcA, the first gene of the Bacillus subtilis dnaK operon encodes a negative regulator of class i heat shock genes
-
Schulz, A.; Schumann, W. hrcA, the first gene of the Bacillus subtilis dnaK operon encodes a negative regulator of class I heat shock genes J. Bacteriol. 1996, 178, 1088-1093
-
(1996)
J. Bacteriol.
, vol.178
, pp. 1088-1093
-
-
Schulz, A.1
Schumann, W.2
-
6
-
-
0028025076
-
Pipecolic acid is an osmoprotectant for Escherichia coli taken up by the general osmoporters ProU and ProP
-
Gouesbet, G.; Jebbar, M.; Talibart, R.; Bernard, T.; Blanco, C. Pipecolic acid is an osmoprotectant for Escherichia coli taken up by the general osmoporters ProU and ProP Microbiology 1994, 140, 2415-2422
-
(1994)
Microbiology
, vol.140
, pp. 2415-2422
-
-
Gouesbet, G.1
Jebbar, M.2
Talibart, R.3
Bernard, T.4
Blanco, C.5
-
7
-
-
0028968087
-
The osmoprotectant proline betaine is a major substrate for the binding-protein-dependent transport system ProU of Escherichia coli K-12
-
Haardt, M.; Kempf, B.; Faatz, E.; Bremer, E. The osmoprotectant proline betaine is a major substrate for the binding-protein-dependent transport system ProU of Escherichia coli K-12 Mol. Gen. Genet. 1995, 246, 783-786
-
(1995)
Mol. Gen. Genet.
, vol.246
, pp. 783-786
-
-
Haardt, M.1
Kempf, B.2
Faatz, E.3
Bremer, E.4
-
8
-
-
78650946023
-
Development and applications of functional gene microarrays in the analysis of the functional diversity, composition, and structure of microbial communities
-
He, Z.; van Nostrand, J. D.; Deng, Y.; Zhou, J. Development and applications of functional gene microarrays in the analysis of the functional diversity, composition, and structure of microbial communities Front. Environ. Sci. Eng. China 2011, 5, 1-20
-
(2011)
Front. Environ. Sci. Eng. China
, vol.5
, pp. 1-20
-
-
He, Z.1
Van Nostrand, J.D.2
Deng, Y.3
Zhou, J.4
-
9
-
-
84858862650
-
The Hydrogenase Chip: A tiling oligonucleotide DNA microarray technique for characterizing hydrogen-producing and -consuming microbes in microbial communities
-
Marshall, I. P. G.; Berggren, D. R. V.; Azizian, M. F.; Burow, L. C.; Semprini, L.; Spormann, A. M. The Hydrogenase Chip: A tiling oligonucleotide DNA microarray technique for characterizing hydrogen-producing and -consuming microbes in microbial communities ISME J. 2012, 6, 814-826
-
(2012)
ISME J.
, vol.6
, pp. 814-826
-
-
Marshall, I.P.G.1
Berggren, D.R.V.2
Azizian, M.F.3
Burow, L.C.4
Semprini, L.5
Spormann, A.M.6
-
10
-
-
79951971276
-
HiSpOD: Probe design for functional DNA microarrays
-
Dugat-Bony, E.; Missaoui, M.; Peyretaillade, E.; Biderre-Petit, C.; Bouzid, O.; Gouinaud, C.; Hill, D.; Peyret, P. HiSpOD: Probe design for functional DNA microarrays Bioinformatics 2011, 27, 641-648
-
(2011)
Bioinformatics
, vol.27
, pp. 641-648
-
-
Dugat-Bony, E.1
Missaoui, M.2
Peyretaillade, E.3
Biderre-Petit, C.4
Bouzid, O.5
Gouinaud, C.6
Hill, D.7
Peyret, P.8
-
11
-
-
84856484915
-
Development of functional gene microarrays for microbial community analysis
-
He, Z.; Deng, Y.; Zhou, J. Development of functional gene microarrays for microbial community analysis Curr. Opin. Biotechnol. 2012, 23, 49-55
-
(2012)
Curr. Opin. Biotechnol.
, vol.23
, pp. 49-55
-
-
He, Z.1
Deng, Y.2
Zhou, J.3
-
12
-
-
84861683945
-
Applications of functional gene microarrays for profiling microbial communities
-
He, Z.; Van Nostrand, J. D.; Zhou, J. Applications of functional gene microarrays for profiling microbial communities Curr. Opin. Biotechnol. 2012, 23, 460-466
-
(2012)
Curr. Opin. Biotechnol.
, vol.23
, pp. 460-466
-
-
He, Z.1
Van Nostrand, J.D.2
Zhou, J.3
-
13
-
-
34248159046
-
GeoChip: A comprehensive microarray for investigating biogeochemical, ecological and environmental processes
-
He, Z.; Gentry, T. J.; Schadt, C. W.; Wu, L.; Liebich, J.; Chong, S. C.; Huang, Z.; Wu, W.; Gu, B.; Jardine, P.; Criddle, C.; Zhou, J. GeoChip: A comprehensive microarray for investigating biogeochemical, ecological and environmental processes ISME J. 2007, 1, 67-77
-
(2007)
ISME J.
, vol.1
, pp. 67-77
-
-
He, Z.1
Gentry, T.J.2
Schadt, C.W.3
Wu, L.4
Liebich, J.5
Chong, S.C.6
Huang, Z.7
Wu, W.8
Gu, B.9
Jardine, P.10
Criddle, C.11
Zhou, J.12
-
14
-
-
77956094278
-
GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
-
He, Z.; Deng, Y.; Van Nostrand, J. D.; Tu, Q.; Xu, M.; Hemme, C. L.; Li, X.; Wu, L.; Gentry, T. J.; Yin, Y.; Liebich, J.; Hazen, T. C.; Zhou, J. GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity ISME J. 2010, 4, 1167-1179
-
(2010)
ISME J.
, vol.4
, pp. 1167-1179
-
-
He, Z.1
Deng, Y.2
Van Nostrand, J.D.3
Tu, Q.4
Xu, M.5
Hemme, C.L.6
Li, X.7
Wu, L.8
Gentry, T.J.9
Yin, Y.10
Liebich, J.11
Hazen, T.C.12
Zhou, J.13
-
15
-
-
76749162388
-
2
-
2 Ecol. Lett. 2010, 13, 564-575
-
(2010)
Ecol. Lett.
, vol.13
, pp. 564-575
-
-
He, Z.1
Xu, M.2
Deng, Y.3
Kang, S.4
Kellogg, L.5
Wu, L.6
Van Nostrand, J.D.7
Hobbie, S.E.8
Reich, P.B.9
Zhou, J.10
-
16
-
-
84863115440
-
Microbial mediation of carbon-cycle feedbacks to climate warming
-
Zhou, J.; Xue, K.; Xie, J.; Deng, Y.; Wu, L.; Cheng, X.; Fei, S.; Deng, S.; He, Z.; Van Nostrand, J. D.; Luo, Y. Microbial mediation of carbon-cycle feedbacks to climate warming Nat. Clim. Change 2012, 2, 106-110
-
(2012)
Nat. Clim. Change
, vol.2
, pp. 106-110
-
-
Zhou, J.1
Xue, K.2
Xie, J.3
Deng, Y.4
Wu, L.5
Cheng, X.6
Fei, S.7
Deng, S.8
He, Z.9
Van Nostrand, J.D.10
Luo, Y.11
-
17
-
-
3242773890
-
Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays
-
Rhee, S.-K.; Liu, X.; Wu, L.; Chong, S. C.; Wan, X.; Zhou, J. Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays Appl. Environ. Microbiol. 2004, 70, 4303-4317
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 4303-4317
-
-
Rhee, S.-K.1
Liu, X.2
Wu, L.3
Chong, S.C.4
Wan, X.5
Zhou, J.6
-
18
-
-
1842579620
-
Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples
-
Tiquia, S. M.; Wu, L.; Chong, S. C.; Passovets, S.; Xu, D.; Xu, Y.; Zhou, J. Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples Biotechniques 2004, 36, 664-675
-
(2004)
Biotechniques
, vol.36
, pp. 664-675
-
-
Tiquia, S.M.1
Wu, L.2
Chong, S.C.3
Passovets, S.4
Xu, D.5
Xu, Y.6
Zhou, J.7
-
19
-
-
22144441403
-
Empirical establishment of oligonucleotide probe design criteria
-
He, Z.; Wu, L.; Li, X.; Fields, M. W.; Zhou, J. Empirical establishment of oligonucleotide probe design criteria Appl. Environ. Microbiol. 2005, 71, 3753-3760
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 3753-3760
-
-
He, Z.1
Wu, L.2
Li, X.3
Fields, M.W.4
Zhou, J.5
-
20
-
-
27244449595
-
Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation
-
Li, X.; He, Z.; Zhou, J. Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation Nucleic Acids Res. 2005, 33, 6114-6123
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6114-6123
-
-
Li, X.1
He, Z.2
Zhou, J.3
-
21
-
-
33144457149
-
Improvement of oligonucleotide probe design criteria for functional gene microarrays in environmental applications
-
Liebich, J.; Schadt, C. W.; Chong, S. C.; He, Z.; Rhee, S.-K.; Zhou, J. Improvement of oligonucleotide probe design criteria for functional gene microarrays in environmental applications Appl. Environ. Microbiol. 2006, 72, 1688-1691
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 1688-1691
-
-
Liebich, J.1
Schadt, C.W.2
Chong, S.C.3
He, Z.4
Rhee, S.-K.5
Zhou, J.6
-
22
-
-
33746095025
-
Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification
-
Wu, L.; Liu, X.; Schadt, C. W.; Zhou, J. Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification Appl. Environ. Microbiol. 2006, 72, 4931-4941
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 4931-4941
-
-
Wu, L.1
Liu, X.2
Schadt, C.W.3
Zhou, J.4
-
23
-
-
76649114015
-
Development of a common oligonucleotide reference standard for microarray data normalization and comparison across different microbial communities
-
Liang, Y.; He, Z.; Wu, L.; Deng, Y.; Li, G.; Zhou, J. Development of a common oligonucleotide reference standard for microarray data normalization and comparison across different microbial communities Appl. Environ. Microbiol. 2010, 76, 1088-1094
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 1088-1094
-
-
Liang, Y.1
He, Z.2
Wu, L.3
Deng, Y.4
Li, G.5
Zhou, J.6
-
24
-
-
33846435742
-
Microarray-based analysis of microbial community RNAs by whole-community RNA amplification
-
Gao, H.; Yang, Z. K.; Gentry, T. J.; Wu, L.; Schadt, C. W.; Zhou, J. Microarray-based analysis of microbial community RNAs by whole-community RNA amplification Appl. Environ. Microbiol. 2007, 73, 563-571
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 563-571
-
-
Gao, H.1
Yang, Z.K.2
Gentry, T.J.3
Wu, L.4
Schadt, C.W.5
Zhou, J.6
-
25
-
-
0033118825
-
Interplay of global regulators and cell physiology in the general stress response of Escherichia coli
-
Hengge-Aronis, R. Interplay of global regulators and cell physiology in the general stress response of Escherichia coli Curr. Opin. Microbiol. 1999, 2, 148-152
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 148-152
-
-
Hengge-Aronis, R.1
-
26
-
-
14244256556
-
Genome-wide analysis of the general stress response network in Escherichia coli: SigmaS-dependent genes, promoters, and sigma factor selectivity
-
Weber, H.; Polen, T.; Heuveling, J.; Wendisch, V. F.; Hengge, R. Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity J. Bacteriol. 2005, 187, 1591-1603
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1591-1603
-
-
Weber, H.1
Polen, T.2
Heuveling, J.3
Wendisch, V.F.4
Hengge, R.5
-
27
-
-
0029609377
-
Cloning, nucleotide sequence, and regulation of katE encoding a sigma B-dependent catalase in Bacillus subtilis
-
Engelmann, S.; Lindner, C.; Hecker, M. Cloning, nucleotide sequence, and regulation of katE encoding a sigma B-dependent catalase in Bacillus subtilis J. Bacteriol. 1995, 177, 5598-605
-
(1995)
J. Bacteriol.
, vol.177
, pp. 5598-5605
-
-
Engelmann, S.1
Lindner, C.2
Hecker, M.3
-
28
-
-
0032765908
-
Obg, an essential GTP binding protein of Bacillus subtilis, is necessary for stress activation of transcription factor sigma B
-
Scott, J. M.; Haldenwang, W. G. Obg, an essential GTP binding protein of Bacillus subtilis, is necessary for stress activation of transcription factor sigma B J. Bacteriol. 1999, 181, 4653-4660
-
(1999)
J. Bacteriol.
, vol.181
, pp. 4653-4660
-
-
Scott, J.M.1
Haldenwang, W.G.2
-
29
-
-
34248328786
-
Regulation of the stringent response is the essential function of the conserved bacterial G protein CgtA in Vibrio cholerae
-
Raskin, D. M.; Judson, N.; Mekalanos, J. J. Regulation of the stringent response is the essential function of the conserved bacterial G protein CgtA in Vibrio cholerae Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 4636-4641
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 4636-4641
-
-
Raskin, D.M.1
Judson, N.2
Mekalanos, J.J.3
-
30
-
-
67650465604
-
The ObgE/CgtA GTPase influences the stringent response to amino acid starvation in Escherichia coli
-
Persky, N. S.; Ferullo, D. J.; Cooper, D. L.; Moore, H. R.; Lovett, S. T. The ObgE/CgtA GTPase influences the stringent response to amino acid starvation in Escherichia coli Mol. Microbiol. 2009, 73, 253-266
-
(2009)
Mol. Microbiol.
, vol.73
, pp. 253-266
-
-
Persky, N.S.1
Ferullo, D.J.2
Cooper, D.L.3
Moore, H.R.4
Lovett, S.T.5
-
31
-
-
3843074167
-
The Escherichia coli GTPase CgtAE cofractionates with the 50S ribosomal subunit and interacts with SpoT, a ppGpp synthetase/hydrolase
-
Wout, P.; Pu, K.; Sullivan, S. M.; Reese, V.; Zhou, S.; Lin, B.; Maddock, J. R. The Escherichia coli GTPase CgtAE cofractionates with the 50S ribosomal subunit and interacts with SpoT, a ppGpp synthetase/hydrolase J. Bacteriol. 2004, 186, 5249-5257
-
(2004)
J. Bacteriol.
, vol.186
, pp. 5249-5257
-
-
Wout, P.1
Pu, K.2
Sullivan, S.M.3
Reese, V.4
Zhou, S.5
Lin, B.6
Maddock, J.R.7
-
32
-
-
0038310304
-
Regulation of the heat shock response in Escherichia coli and Bacillus subtilis
-
Schumann, W. Regulation of the heat shock response in Escherichia coli and Bacillus subtilis J. Biosci. 1996, 21, 133-148
-
(1996)
J. Biosci.
, vol.21
, pp. 133-148
-
-
Schumann, W.1
-
33
-
-
0033119344
-
Cold-shock response and cold-shock proteins
-
Phadtare, S.; Alsina, J.; Inouye, M. Cold-shock response and cold-shock proteins Curr. Opin. Microbiol. 1999, 2, 175-180
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 175-180
-
-
Phadtare, S.1
Alsina, J.2
Inouye, M.3
-
34
-
-
0031015217
-
CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone
-
Jiang, W.; Hou, Y.; Inouye, M. CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone J. Biol. Chem. 1997, 272, 196-202
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 196-202
-
-
Jiang, W.1
Hou, Y.2
Inouye, M.3
-
35
-
-
53849102220
-
Characterization of Caulobacter crescentus response to low temperature and identification of genes involved in freezing resistance
-
Mazzon, R. R.; Lang, E. A. S.; Braz, V. S.; Marques, M. V. Characterization of Caulobacter crescentus response to low temperature and identification of genes involved in freezing resistance FEMS Microbiol. Lett. 2008, 288, 178-185
-
(2008)
FEMS Microbiol. Lett.
, vol.288
, pp. 178-185
-
-
Mazzon, R.R.1
Lang, E.A.S.2
Braz, V.S.3
Marques, M.V.4
-
36
-
-
0031719418
-
Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments
-
Kempf, B.; Bremer, E. Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments Arch. Microbiol. 1998, 170, 319-330
-
(1998)
Arch. Microbiol.
, vol.170
, pp. 319-330
-
-
Kempf, B.1
Bremer, E.2
-
37
-
-
0030748256
-
Osmostress response in Bacillus subtilis: Characterization of a proline uptake system (OpuE) regulated by high osmolarity and the alternative transcription factor sigma B
-
von Blohn, C.; Kempf, B.; Kappes, R. M.; Bremer, E. Osmostress response in Bacillus subtilis: Characterization of a proline uptake system (OpuE) regulated by high osmolarity and the alternative transcription factor sigma B Mol. Microbiol. 1997, 25, 175-187
-
(1997)
Mol. Microbiol.
, vol.25
, pp. 175-187
-
-
Von Blohn, C.1
Kempf, B.2
Kappes, R.M.3
Bremer, E.4
-
38
-
-
0031871413
-
Osmoregulation of the opuE proline transport gene from Bacillus subtilis: Contributions of the sigma A- and sigma B-dependent stress-responsive promoters
-
Spiegelhalter, F.; Bremer, E. Osmoregulation of the opuE proline transport gene from Bacillus subtilis: Contributions of the sigma A- and sigma B-dependent stress-responsive promoters Mol. Microbiol. 1998, 29, 285-296
-
(1998)
Mol. Microbiol.
, vol.29
, pp. 285-296
-
-
Spiegelhalter, F.1
Bremer, E.2
-
39
-
-
0036267391
-
Regulation of the Bacillus subtilis fur and perR genes by PerR: Not all members of the PerR regulon are peroxide inducible
-
Fuangthong, M.; Herbig, A. F.; Bsat, N.; Helmann, J. D. Regulation of the Bacillus subtilis fur and perR genes by PerR: not all members of the PerR regulon are peroxide inducible J. Bacteriol. 2002, 184, 3276-3286
-
(2002)
J. Bacteriol.
, vol.184
, pp. 3276-3286
-
-
Fuangthong, M.1
Herbig, A.F.2
Bsat, N.3
Helmann, J.D.4
-
40
-
-
0035283587
-
Redox-operated genetic switches: The SoxR and OxyR transcription factors
-
Pomposiello, P. J.; Demple, B. Redox-operated genetic switches: The SoxR and OxyR transcription factors Trends Biotechnol. 2001, 19, 109-114
-
(2001)
Trends Biotechnol.
, vol.19
, pp. 109-114
-
-
Pomposiello, P.J.1
Demple, B.2
-
41
-
-
1242318677
-
Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress
-
Mostertz, J.; Scharf, C.; Hecker, M.; Homuth, G. Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress Microbiology 2004, 150, 497-512
-
(2004)
Microbiology
, vol.150
, pp. 497-512
-
-
Mostertz, J.1
Scharf, C.2
Hecker, M.3
Homuth, G.4
-
42
-
-
0034537304
-
Interplay between three global regulatory proteins mediates oxygen regulation of the Escherichia coli cytochrome d oxidase (cydAB) operon
-
Govantes, F.; Orjalo, A. V.; Gunsalus, R. P. Interplay between three global regulatory proteins mediates oxygen regulation of the Escherichia coli cytochrome d oxidase (cydAB) operon Mol. Microbiol. 2000, 38, 1061-1073
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 1061-1073
-
-
Govantes, F.1
Orjalo, A.V.2
Gunsalus, R.P.3
-
43
-
-
0025820091
-
Adaptive responses to oxygen limitation in Escherichia coli
-
Spiro, S.; Guest, J. R. Adaptive responses to oxygen limitation in Escherichia coli Trends Biochem. Sci. 1991, 16, 310-314
-
(1991)
Trends Biochem. Sci.
, vol.16
, pp. 310-314
-
-
Spiro, S.1
Guest, J.R.2
-
44
-
-
0031727390
-
Anaerobic growth of a "strict aerobe" (Bacillus subtilis)
-
Nakano, M. M.; Zuber, P. Anaerobic growth of a "strict aerobe" (Bacillus subtilis) Annu. Rev. Microbiol. 1998, 52, 165-190
-
(1998)
Annu. Rev. Microbiol.
, vol.52
, pp. 165-190
-
-
Nakano, M.M.1
Zuber, P.2
-
45
-
-
0029619251
-
Regulation of the putative bglPH operon for aryl-beta-glucoside utilization in Bacillus subtilis
-
Kruger, S.; Hecker, M. Regulation of the putative bglPH operon for aryl-beta-glucoside utilization in Bacillus subtilis J. Bacteriol. 1995, 177, 5590-5597
-
(1995)
J. Bacteriol.
, vol.177
, pp. 5590-5597
-
-
Kruger, S.1
Hecker, M.2
-
46
-
-
0026491079
-
Mutational analysis of the Escherichia coli phosphate-specific transport system, a member of the traffic ATPase (or ABC) family of membrane transporters. A role for proline residues in transmembrane helices
-
Webb, D. C.; Rosenberg, H.; Cox, G. B. Mutational analysis of the Escherichia coli phosphate-specific transport system, a member of the traffic ATPase (or ABC) family of membrane transporters. A role for proline residues in transmembrane helices J. Biol. Chem. 1992, 267, 24661-24668
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 24661-24668
-
-
Webb, D.C.1
Rosenberg, H.2
Cox, G.B.3
-
47
-
-
0025471134
-
From cell membrane to nucleotides: The phosphate regulon in Escherichia coli
-
Torriani, A. From cell membrane to nucleotides: The phosphate regulon in Escherichia coli Bioessays 1990, 12, 371-376
-
(1990)
Bioessays
, vol.12
, pp. 371-376
-
-
Torriani, A.1
-
48
-
-
4444306185
-
Post-transcriptional regulation of the Bacillus subtilis pst operon encoding a phosphate-specific ABC transporter
-
Allenby, N. E. E.; O'Connor, N.; Prágai, Z.; Carter, N. M.; Miethke, M.; Engelmann, S.; Hecker, M.; Wipat, A.; Ward, A. C.; Harwood, C. R. Post-transcriptional regulation of the Bacillus subtilis pst operon encoding a phosphate-specific ABC transporter Microbiology 2004, 150, 2619-2628
-
(2004)
Microbiology
, vol.150
, pp. 2619-2628
-
-
Allenby, N.E.E.1
O'Connor, N.2
Prágai, Z.3
Carter, N.M.4
Miethke, M.5
Engelmann, S.6
Hecker, M.7
Wipat, A.8
Ward, A.C.9
Harwood, C.R.10
-
49
-
-
33746609376
-
Transcription of the pst operon of Clostridium acetobutylicum is dependent on phosphate concentration and pH
-
Fischer, R.-J.; Oehmcke, S.; Meyer, U.; Mix, M.; Schwarz, K.; Fiedler, T.; Bahl, H. Transcription of the pst operon of Clostridium acetobutylicum is dependent on phosphate concentration and pH J. Bacteriol. 2006, 188, 5469-5478
-
(2006)
J. Bacteriol.
, vol.188
, pp. 5469-5478
-
-
Fischer, R.-J.1
Oehmcke, S.2
Meyer, U.3
Mix, M.4
Schwarz, K.5
Fiedler, T.6
Bahl, H.7
-
50
-
-
53849098363
-
The two-component system PhoPR of Clostridium acetobutylicum is involved in phosphate-dependent gene regulation
-
Fiedler, T.; Mix, M.; Meyer, U.; Mikkat, S.; Glocker, M. O.; Bahl, H.; Fischer, R.-J. The two-component system PhoPR of Clostridium acetobutylicum is involved in phosphate-dependent gene regulation J. Bacteriol. 2008, 190, 6559-6567
-
(2008)
J. Bacteriol.
, vol.190
, pp. 6559-6567
-
-
Fiedler, T.1
Mix, M.2
Meyer, U.3
Mikkat, S.4
Glocker, M.O.5
Bahl, H.6
Fischer, R.-J.7
-
51
-
-
0029947312
-
Molecular analysis of the phosphate-specific transport (pst) operon of Pseudomonas aeruginosa
-
Nikata, T.; Sakai, Y.; Shibata, K.; Kato, J.; Kuroda, A.; Ohtake, H. Molecular analysis of the phosphate-specific transport (pst) operon of Pseudomonas aeruginosa Mol. Gen. Genet. 1996, 250, 692-698
-
(1996)
Mol. Gen. Genet.
, vol.250
, pp. 692-698
-
-
Nikata, T.1
Sakai, Y.2
Shibata, K.3
Kato, J.4
Kuroda, A.5
Ohtake, H.6
-
52
-
-
76349121789
-
Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer
-
N'Guessan, A. L.; Elifantz, H.; Nevin, K. P.; Mouser, P. J.; Methe, B.; Woodard, T. L.; Manley, K.; Williams, K. H.; Wilkins, M. J.; Larsen, J. T.; Long, P. E.; Lovley, D. R. Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer ISME J. 2009, 4, 253-266
-
(2009)
ISME J.
, vol.4
, pp. 253-266
-
-
N'Guessan, A.L.1
Elifantz, H.2
Nevin, K.P.3
Mouser, P.J.4
Methe, B.5
Woodard, T.L.6
Manley, K.7
Williams, K.H.8
Wilkins, M.J.9
Larsen, J.T.10
Long, P.E.11
Lovley, D.R.12
-
53
-
-
34547148485
-
Protection of the glutamate pool concentration in enteric bacteria
-
Yan, D. Protection of the glutamate pool concentration in enteric bacteria Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 9475-9480
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 9475-9480
-
-
Yan, D.1
-
54
-
-
9444233868
-
TnrA, a transcription factor required for global nitrogen regulation in Bacillus subtilis
-
Wray, L. V.; Ferson, A. E.; Rohrer, K.; Fisher, S. H. TnrA, a transcription factor required for global nitrogen regulation in Bacillus subtilis Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 8841-8845
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 8841-8845
-
-
Wray, L.V.1
Ferson, A.E.2
Rohrer, K.3
Fisher, S.H.4
-
55
-
-
0022344755
-
Production of abnormal proteins in E coli stimulates transcription of ion and other heat shock genes
-
Goff, S. A.; Goldberg, A. L. Production of abnormal proteins in E coli stimulates transcription of ion and other heat shock genes Cell 1985, 41, 587-595
-
(1985)
Cell
, vol.41
, pp. 587-595
-
-
Goff, S.A.1
Goldberg, A.L.2
-
56
-
-
0028907619
-
Gratuitous overexpression of genes in Escherichia coli leads to growth inhibition and ribosome destruction
-
Dong, H.; Nilsson, L.; Kurland, C. Gratuitous overexpression of genes in Escherichia coli leads to growth inhibition and ribosome destruction J. Bacteriol. 1995, 177, 1497-1504
-
(1995)
J. Bacteriol.
, vol.177
, pp. 1497-1504
-
-
Dong, H.1
Nilsson, L.2
Kurland, C.3
-
57
-
-
0026645163
-
Proteolytic response to the expression of an abnormal beta-galactosidase in Escherichia coli
-
Kosinski, M. J.; Rinas, U.; Bailey, J. E. Proteolytic response to the expression of an abnormal beta-galactosidase in Escherichia coli Appl. Microbiol. Biotechnol. 1992, 37, 335-341
-
(1992)
Appl. Microbiol. Biotechnol.
, vol.37
, pp. 335-341
-
-
Kosinski, M.J.1
Rinas, U.2
Bailey, J.E.3
-
58
-
-
0035073906
-
Proteome and transcriptome based analysis of Bacillus subtilis cells overproducing an insoluble heterologous protein
-
Jürgen, B.; Hanschke, R.; Sarvas, M.; Hecker, M.; Schweder, T. Proteome and transcriptome based analysis of Bacillus subtilis cells overproducing an insoluble heterologous protein Appl. Microbiol. Biotechnol. 2001, 55, 326-332
-
(2001)
Appl. Microbiol. Biotechnol.
, vol.55
, pp. 326-332
-
-
Jürgen, B.1
Hanschke, R.2
Sarvas, M.3
Hecker, M.4
Schweder, T.5
-
59
-
-
0034072580
-
The Clp proteases of Bacillus subtilis are directly involved in degradation of misfolded proteins
-
Kruger, E.; Witt, E.; Ohlmeier, S.; Hanschke, R.; Hecker, M. The Clp proteases of Bacillus subtilis are directly involved in degradation of misfolded proteins J. Bacteriol. 2000, 182, 3259-3265
-
(2000)
J. Bacteriol.
, vol.182
, pp. 3259-3265
-
-
Kruger, E.1
Witt, E.2
Ohlmeier, S.3
Hanschke, R.4
Hecker, M.5
-
60
-
-
0032921346
-
CtsR, a novel regulator of stress and heat shock response, controls clp and molecular chaperone gene expression in Gram-positive bacteria
-
Derré, I.; Rapoport, G.; Msadek, T. CtsR, a novel regulator of stress and heat shock response, controls clp and molecular chaperone gene expression in Gram-positive bacteria Mol. Microbiol. 1999, 31, 117-131
-
(1999)
Mol. Microbiol.
, vol.31
, pp. 117-131
-
-
Derré, I.1
Rapoport, G.2
Msadek, T.3
-
61
-
-
77956299931
-
Deep-sea oil plume enriches indigenous oil-degrading bacteria
-
Hazen, T. C.; Dubinsky, E. A.; DeSantis, T. Z.; Andersen, G. L.; Piceno, Y. M.; Singh, N.; Jansson, J. K.; Probst, A.; Borglin, S. E.; Fortney, J. L.; Stringfellow, W. T.; Bill, M.; Conrad, M. E.; Tom, L. M.; Chavarria, K. L.; Alusi, T. R.; Lamendella, R.; Joyner, D. C.; Spier, C.; Baelum, J.; Auer, M.; Zemla, M. L.; Chakraborty, R.; Sonnenthal, E. L.; D'haeseleer, P.; Holman, H.-Y. N.; Osman, S.; Lu, Z.; Van Nostrand, J. D.; Deng, Y.; Zhou, J.; Mason, O. U. Deep-sea oil plume enriches indigenous oil-degrading bacteria Science 2010, 330, 204-208
-
(2010)
Science
, vol.330
, pp. 204-208
-
-
Hazen, T.C.1
Dubinsky, E.A.2
Desantis, T.Z.3
Andersen, G.L.4
Piceno, Y.M.5
Singh, N.6
Jansson, J.K.7
Probst, A.8
Borglin, S.E.9
Fortney, J.L.10
Stringfellow, W.T.11
Bill, M.12
Conrad, M.E.13
Tom, L.M.14
Chavarria, K.L.15
Alusi, T.R.16
Lamendella, R.17
Joyner, D.C.18
Spier, C.19
Baelum, J.20
Auer, M.21
Zemla, M.L.22
Chakraborty, R.23
Sonnenthal, E.L.24
D'Haeseleer, P.25
Holman, H.-Y.N.26
Osman, S.27
Lu, Z.28
Van Nostrand, J.D.29
Deng, Y.30
Zhou, J.31
Mason, O.U.32
more..
-
62
-
-
84855964551
-
Microbial gene functions enriched in the deepwater horizon deep-sea oil plume
-
Lu, Z.; Deng, Y.; Van Nostrand, J. D.; He, Z.; Voordeckers, J.; Zhou, A.; Lee, Y.-J.; Mason, O. U.; Dubinsky, E. A.; Chavarria, K. L.; Tom, L. M.; Fortney, J. L.; Lamendella, R.; Jansson, J. K.; D'Haeseleer, P.; Hazen, T. C.; Zhou, J. Microbial gene functions enriched in the deepwater horizon deep-sea oil plume ISME J. 2012, 6, 451-460
-
(2012)
ISME J.
, vol.6
, pp. 451-460
-
-
Lu, Z.1
Deng, Y.2
Van Nostrand, J.D.3
He, Z.4
Voordeckers, J.5
Zhou, A.6
Lee, Y.-J.7
Mason, O.U.8
Dubinsky, E.A.9
Chavarria, K.L.10
Tom, L.M.11
Fortney, J.L.12
Lamendella, R.13
Jansson, J.K.14
D'Haeseleer, P.15
Hazen, T.C.16
Zhou, J.17
-
63
-
-
0037665941
-
Transcription regulation and environmental adaptation in bacteria
-
Cases, I.; de Lorenzo, V.; Ouzounis, C. A. Transcription regulation and environmental adaptation in bacteria Trends Microbiol. 2003, 11, 248-253
-
(2003)
Trends Microbiol.
, vol.11
, pp. 248-253
-
-
Cases, I.1
De Lorenzo, V.2
Ouzounis, C.A.3
-
64
-
-
1542327668
-
Trends between gene content and genome size in prokaryotic species with larger genomes
-
Konstantinidis, K. T.; Tiedje, J. M. Trends between gene content and genome size in prokaryotic species with larger genomes Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 3160-3165
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 3160-3165
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
65
-
-
78751704176
-
A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico
-
Kessler, J. D.; Valentine, D. L.; Redmond, M. C.; Du, M.; Chan, E. W.; Mendes, S. D.; Quiroz, E. W.; Villanueva, C. J.; Shusta, S. S.; Werra, L. M.; Yvon-Lewis, S. A.; Weber, T. C. A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico Science 2011, 331, 312-315
-
(2011)
Science
, vol.331
, pp. 312-315
-
-
Kessler, J.D.1
Valentine, D.L.2
Redmond, M.C.3
Du, M.4
Chan, E.W.5
Mendes, S.D.6
Quiroz, E.W.7
Villanueva, C.J.8
Shusta, S.S.9
Werra, L.M.10
Yvon-Lewis, S.A.11
Weber, T.C.12
-
66
-
-
84865318505
-
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
-
Mason, O. U.; Hazen, T. C.; Borglin, S.; Chain, P. S. G.; Dubinsky, E. A.; Fortney, J. L.; Han, J.; Holman, H. N.; Hultman, J.; Lamendella, R.; Mackelprang, R.; Malfatti, S.; Tom, L. M.; Tringe, S. G.; Woyke, T.; Zhou, J.; Rubin, E. M.; Jansson, J. K. Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill ISME J 2012, 6, 1715-1727
-
(2012)
ISME J
, vol.6
, pp. 1715-1727
-
-
Mason, O.U.1
Hazen, T.C.2
Borglin, S.3
Chain, P.S.G.4
Dubinsky, E.A.5
Fortney, J.L.6
Han, J.7
Holman, H.N.8
Hultman, J.9
Lamendella, R.10
Mackelprang, R.11
Malfatti, S.12
Tom, L.M.13
Tringe, S.G.14
Woyke, T.15
Zhou, J.16
Rubin, E.M.17
Jansson, J.K.18
-
67
-
-
77957750550
-
Propane respiration jump-starts microbial response to a deep oil spill
-
Valentine, D. L.; Kessler, J. D.; Redmond, M. C.; Mendes, S. D.; Heintz, M. B.; Farwell, C.; Hu, L.; Kinnaman, F. S.; Yvon-Lewis, S.; Du, M.; Chan, E. W.; Tigreros, F. G.; Villanueva, C. J. Propane respiration jump-starts microbial response to a deep oil spill Science 2010, 330, 208-211
-
(2010)
Science
, vol.330
, pp. 208-211
-
-
Valentine, D.L.1
Kessler, J.D.2
Redmond, M.C.3
Mendes, S.D.4
Heintz, M.B.5
Farwell, C.6
Hu, L.7
Kinnaman, F.S.8
Yvon-Lewis, S.9
Du, M.10
Chan, E.W.11
Tigreros, F.G.12
Villanueva, C.J.13
-
68
-
-
70349458100
-
The genomic basis of trophic strategy in marine bacteria
-
Lauro, F. M.; McDougald, D.; Thomas, T.; Williams, T. J.; Egan, S.; Rice, S.; DeMaere, M. Z.; Ting, L.; Ertan, H.; Johnson, J.; Ferriera, S.; Lapidus, A.; Anderson, I.; Kyrpides, N.; Munk, A. C.; Detter, C.; Han, C. S.; Brown, M. V.; Robb, F. T.; Kjelleberg, S.; Cavicchioli, R. The genomic basis of trophic strategy in marine bacteria Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 15527-15533
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 15527-15533
-
-
Lauro, F.M.1
McDougald, D.2
Thomas, T.3
Williams, T.J.4
Egan, S.5
Rice, S.6
Demaere, M.Z.7
Ting, L.8
Ertan, H.9
Johnson, J.10
Ferriera, S.11
Lapidus, A.12
Anderson, I.13
Kyrpides, N.14
Munk, A.C.15
Detter, C.16
Han, C.S.17
Brown, M.V.18
Robb, F.T.19
Kjelleberg, S.20
Cavicchioli, R.21
more..
-
69
-
-
84855285090
-
Omics for understanding microbial functional dynamics
-
Jansson, J. K.; Neufeld, J. D.; Moran, M. A.; Gilbert, J. A. Omics for understanding microbial functional dynamics Environ. Microbiol. 2012, 14, 1-3
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 1-3
-
-
Jansson, J.K.1
Neufeld, J.D.2
Moran, M.A.3
Gilbert, J.A.4
-
70
-
-
79960557827
-
Reproducibility and quantitation of amplicon sequencing-based detection
-
Zhou, J.; Wu, L.; Deng, Y.; Zhi, X.; Jiang, Y.; Tu, Q.; Xie, J.; Van Nostrand, J. D.; He, Z.; Yang, Y. Reproducibility and quantitation of amplicon sequencing-based detection ISME J. 2011, 5, 1303-1313
-
(2011)
ISME J.
, vol.5
, pp. 1303
-
-
Zhou, J.1
Wu, L.2
Deng, Y.3
Zhi, X.4
Jiang, Y.5
Tu, Q.6
Xie, J.7
Van Nostrand, J.D.8
He, Z.9
Yang, Y.10
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