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Volumn 30, Issue 9, 2013, Pages 2065-2086

Contrasting patterns of evolution of 45S and 5S rDNA families uncover new aspects in the genome constitution of the agronomically important grass thinopyrum intermedium (Triticeae)

Author keywords

concerted evolution; hybridization; in situ hybridization; polyploidy; ribosomal DNA; Triticeae

Indexed keywords

DNA 45S; DNA 5S; INTERNAL TRANSCRIBED SPACER; RIBOSOME DNA; UNCLASSIFIED DRUG;

EID: 84883243092     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst106     Document Type: Article
Times cited : (60)

References (97)
  • 1
    • 0344613211 scopus 로고    scopus 로고
    • Ribosomal ITS sequences and plant phylogenetic inference
    • Álvarez I, Wendel JF. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Mol Phylogenet Evol. 29:417-434.
    • (2003) Mol Phylogenet Evol , vol.29 , pp. 417-434
    • Álvarez, I.1    Wendel, J.F.2
  • 2
    • 0006831643 scopus 로고
    • The 5S DNA units of bread wheat (Triticum aestivum L.)
    • Appels R, Baum BR, Clarke BC. 1992. The 5S DNA units of bread wheat (Triticum aestivum L.). Plant Syst Evol. 183:183-194.
    • (1992) Plant Syst Evol , vol.183 , pp. 183-194
    • Appels, R.1    Baum, B.R.2    Clarke, B.C.3
  • 3
    • 0019132475 scopus 로고
    • Molecular evidence for genetic exchanges among ribosomal genes on non-homologous chromosomes in man and apes
    • Arnheim N, Krystal M, Schmickel R,Wilson G, Ryder O, Zimmer E. 1980. Molecular evidence for genetic exchanges among ribosomal genes on non-homologous chromosomes in man and apes. Proc Natl Acad Sci USA. 77:7323-7327.
    • (1980) Proc Natl Acad Sci USA , vol.77 , pp. 7323-7327
    • Arnheim, N.1    Krystal, M.2    Schmickel Rwilson, G.3    Ryder, O.4    Zimmer, E.5
  • 4
    • 49249124045 scopus 로고    scopus 로고
    • Loss of 5S rDNA units in the evolution of agropyron, pseudoroegneria, and douglasdeweya
    • Baum BR, Edwards T, Johnson DA. 2008. Loss of 5S rDNA units in the evolution of Agropyron, Pseudoroegneria, and Douglasdeweya. Genome 51:589-598.
    • (2008) Genome , vol.51 , pp. 589-598
    • Baum, B.R.1    Edwards, T.2    Johnson, D.A.3
  • 5
    • 68049131208 scopus 로고    scopus 로고
    • Phylogenetic relationships among diploid Aegilops species inferred from 5S rDNA units
    • Baum BR, Edwards T, Johnson DA. 2009. Phylogenetic relationships among diploid Aegilops species inferred from 5S rDNA units. Mol Phylogenet Evol. 53:34-44.
    • (2009) Mol Phylogenet Evol , vol.53 , pp. 34-44
    • Baum, B.R.1    Edwards, T.2    Johnson, D.A.3
  • 6
    • 77953999487 scopus 로고    scopus 로고
    • Elimination of 5S DNA unit classes in newly formed allopolyploids of the genera Aegilops and Triticum
    • Baum BR, Feldman M. 2010. Elimination of 5S DNA unit classes in newly formed allopolyploids of the genera Aegilops and Triticum. Genome 53:430-438.
    • (2010) Genome , vol.53 , pp. 430-438
    • Baum, B.R.1    Feldman, M.2
  • 7
    • 44149095215 scopus 로고    scopus 로고
    • Molecular confirmation of the genomic constitution of Douglasdeweya (Triticeae: Poaceae): demonstration of the utility of the 5S rDNA sequence as a tool for haplome identification
    • Baum BR, Johnson DA. 2008. Molecular confirmation of the genomic constitution of Douglasdeweya (Triticeae: Poaceae): demonstration of the utility of the 5S rDNA sequence as a tool for haplome identification. Mol Genet Genomics. 279:621-628.
    • (2008) Mol Genet Genomics , vol.279 , pp. 621-628
    • Baum, B.R.1    Johnson, D.A.2
  • 8
    • 0036303420 scopus 로고    scopus 로고
    • Defining orthologous groups among multicopy genes prior to inferring phylogeny, with special emphasis on the Triticeae (Poaceae)
    • Baum BR, Johnson DA, Bailey LG. 2001. Defining orthologous groups among multicopy genes prior to inferring phylogeny, with special emphasis on the Triticeae (Poaceae). Hereditas 135: 123-138.
    • (2001) Hereditas , vol.135 , pp. 123-138
    • Baum, B.R.1    Johnson, D.A.2    Bailey, L.G.3
  • 10
    • 1942511467 scopus 로고    scopus 로고
    • Phylogenetic analysis of Hordeum (Poaceae) as inferred by nuclear rDNA ITS sequences
    • Blattner FR. 2004. Phylogenetic analysis of Hordeum (Poaceae) as inferred by nuclear rDNA ITS sequences. Mol Phylogenet Evol. 33: 289-299.
    • (2004) Mol Phylogenet Evol , vol.33 , pp. 289-299
    • Blattner, F.R.1
  • 11
    • 0346097967 scopus 로고    scopus 로고
    • Chromosome characterization in Thinopyrum ponticum (Triticeae, Poaceae) using in situ hybridization with different DNA sequences
    • Brasileiro-Vidal AC, Cuadrado A, Brammer SP, Zanatta ACA, Prestes AM, Moraes-Fernandes MIB, Guerra M. 2003. Chromosome characterization in Thinopyrum ponticum (Triticeae, Poaceae) using in situ hybridization with different DNA sequences. Genet Mol Biol. 26: 505-510.
    • (2003) Genet Mol Biol , vol.26 , pp. 505-510
    • Brasileiro-Vidal, A.C.1    Cuadrado, A.2    Brammer, S.P.3    Aca, Z.4    Prestes, A.M.5    Mib, M.6    Guerra, M.7
  • 12
    • 0031035491 scopus 로고    scopus 로고
    • The evolution of ribosomal DNA: Divergent paralogues and phylogenetic implications
    • Buckler ES, Ippolito A, Holtsford TP. 1997. The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics 145:821-832.
    • (1997) Genetics , vol.145 , pp. 821-832
    • Buckler, E.S.1    Ippolito, A.2    Holtsford, T.P.3
  • 13
    • 2942571539 scopus 로고    scopus 로고
    • The Comparative RNA Web (CRW) Site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
    • (14 co-authors)
    • Cannone J, Subramanian S, Schnare M, et al. (14 co-authors). 2002. The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 3:2.
    • (2002) BMC Bioinformatics , vol.3 , pp. 2
    • Cannone, J.1    Subramanian, S.2    Schnare, M.3
  • 14
    • 0037677692 scopus 로고    scopus 로고
    • ITS2 is a double-edged tool for eukaryote evolutionary comparisons
    • Coleman AW. 2003. ITS2 is a double-edged tool for eukaryote evolutionary comparisons. Trends Genet. 19:370-375.
    • (2003) Trends Genet , vol.19 , pp. 370-375
    • Coleman, A.W.1
  • 15
    • 34250821680 scopus 로고    scopus 로고
    • Pan-eukaryote ITS2 homologies revealed by RNA secondary structure
    • Coleman AW. 2007. Pan-eukaryote ITS2 homologies revealed by RNA secondary structure. Nucleic Acids Res. 35:3322-3329.
    • (2007) Nucleic Acids Res , vol.35 , pp. 3322-3329
    • Coleman, A.W.1
  • 16
    • 0029971137 scopus 로고    scopus 로고
    • Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons
    • Cronn RC, Zhao X, Paterson AH, Wendel JF. 1996. Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons. J Mol Evol. 42: 685-705.
    • (1996) J Mol Evol , vol.42 , pp. 685-705
    • Cronn, R.C.1    Zhao, X.2    Paterson, A.H.3    Wendel, J.F.4
  • 17
    • 0037314114 scopus 로고    scopus 로고
    • RnaViz2: An improved representation of RNA secondary structure
    • De Rijk P, Wuyts J, De Wachter R. 2003. RnaViz2: an improved representation of RNA secondary structure. Bioinformatics 19:299-300.
    • (2003) Bioinformatics , vol.19 , pp. 299-300
    • De Rijk, P.1    Wuyts, J.2    De Wachter, R.3
  • 18
    • 0029033263 scopus 로고
    • Ribosomal RNA multigene loci: Nomads of the Triticeae genomes
    • Dubcovsky J, Dvor?ák J. 1995. Ribosomal RNA multigene loci: nomads of the Triticeae genomes. Genetics 140:1367-1377.
    • (1995) Genetics , vol.140 , pp. 1367-1377
    • Dubcovsky, J.1    Dvorák, J.2
  • 19
    • 0024950737 scopus 로고
    • Organization and evolution of the 5S ribosomal RNA gene family in wheat and related species
    • Dvorák J, Zhang H-B, Kota RS, Lassner M, 1989, Organization and evolution of the 5S ribosomal RNA gene family in wheat and related species. Genome, 32, 1003-1016.
    • (1989) Genome , vol.32 , pp. 1003-1016
    • Dvorák, J.1    Zhang, H.-B.2    Kota, R.S.3    Lassner, M.4
  • 20
    • 34247899003 scopus 로고    scopus 로고
    • Finely orchestrated movements: Evolution of the ribosomal RNA genes
    • Eickbush TH, Eickbush DG. 2007. Finely orchestrated movements: evolution of the ribosomal RNA genes. Genetics 175:477-485.
    • (2007) Genetics , vol.175 , pp. 477-485
    • Eickbush, T.H.1    Eickbush, D.G.2
  • 21
    • 36348954980 scopus 로고    scopus 로고
    • Investigations of 5S rDNA of Vitis vinifera L. sequence analysis and physical mapping
    • Falistocco E, Passeri V, Marconi G. 2007. Investigations of 5S rDNA of Vitis vinifera L.: sequence analysis and physical mapping. Genome 50: 927-938.
    • (2007) Genome , vol.50 , pp. 927-938
    • Falistocco, E.1    Passeri, V.2    Marconi, G.3
  • 22
    • 70350504603 scopus 로고    scopus 로고
    • Intra-individual polymorphism in diploid and apomictic polyploid hawkweeds (Hieracium, Lactuceae, Asteraceae): Disentangling phylogenetic signal, reticulation, and noise
    • Fehrer J, Krak K, Chrtek J Jr. 2009. Intra-individual polymorphism in diploid and apomictic polyploid hawkweeds (Hieracium, Lactuceae, Asteraceae): disentangling phylogenetic signal, reticulation, and noise. BMC Evol Biol. 9:239.
    • (2009) BMC Evol Biol , vol.9 , pp. 239
    • Fehrer, J.1    Krak, K.2    Chrtek Jr., J.3
  • 23
    • 0028369699 scopus 로고
    • Physical mapping of 5S rDNA loci by direct-cloned biotinylated probes in barley chromosomes
    • Fukui K, Kamisugi Y, Sakai F. 1994. Physical mapping of 5S rDNA loci by direct-cloned biotinylated probes in barley chromosomes. Genome 37:105-111.
    • (1994) Genome , vol.37 , pp. 105-111
    • Fukui, K.1    Kamisugi, Y.2    Sakai, F.3
  • 24
    • 79951775184 scopus 로고    scopus 로고
    • Contrasting patterns of the 5S and 45S rDNA evolutions in the Byblis liniflora complex (Byblidaceae)
    • Fukushima K, Imamura K, Nagano K, Hoshi Y. 2011. Contrasting patterns of the 5S and 45S rDNA evolutions in the Byblis liniflora complex (Byblidaceae). J Plant Res. 124:231-244.
    • (2011) J Plant Res , vol.124 , pp. 231-244
    • Fukushima, K.1    Imamura, K.2    Nagano, K.3    Hoshi, Y.4
  • 25
    • 35248877550 scopus 로고    scopus 로고
    • Low abundant spacer 5S rRNA transcripts are frequently polyadenylated in Nicotiana
    • Fulnecek J, Kovaŕk A 2007, Low abundant spacer 5S rRNA transcripts are frequently polyadenylated in Nicotiana. Mol Genet Genomics, 278, 565-573.
    • (2007) Mol Genet Genomics , vol.278 , pp. 565-573
    • Fulnecek, J.1    Kovaŕk, A.2
  • 26
    • 0036008410 scopus 로고    scopus 로고
    • Evolution and structure of 5S rDNA loci in allotetraploid Nicotiana tabacum and its putative parental species
    • Fulnecek J, Lim KY, Leitch AR, Kovaŕk A, Matyásek R. 2002. Evolution and structure of 5S rDNA loci in allotetraploid Nicotiana tabacum and its putative parental species. Heredity 88:19-25.
    • (2002) Heredity , vol.88 , pp. 19-25
    • Fulnecek, J.1    Lim, K.Y.2    Leitch, A.R.3    Kovaŕk, A.4    Matyásek, R.5
  • 27
    • 0030812938 scopus 로고    scopus 로고
    • Genomic organization and phylogenetic relationships in the genus Dasypyrum analysed by Southern and in situ hybridization of total genomic and cloned DNA probes
    • Galasso I, Blanco A, Katsiotis A, Pignone D, Heslop-Harrison JS. 1997. Genomic organization and phylogenetic relationships in the genus Dasypyrum analysed by Southern and in situ hybridization of total genomic and cloned DNA probes. Chromosoma 106:53-61.
    • (1997) Chromosoma , vol.106 , pp. 53-61
    • Galasso, I.1    Blanco, A.2    Katsiotis, A.3    Pignone, D.4    Heslop-Harrison, J.S.5
  • 28
    • 84862326123 scopus 로고    scopus 로고
    • Expression of 5S rRNA genes linked to 35S rDNA in plants, their epigenetic modification and regulatory element divergence
    • Garcia S, Crhák Khaitová L, Kovaŕk A. 2012. Expression of 5S rRNA genes linked to 35S rDNA in plants, their epigenetic modification and regulatory element divergence. BMC Plant Biol. 12:95.
    • (2012) BMC Plant Biol , vol.12 , pp. 95
    • Garcia, S.1    Crhák Khaitová, L.2    Kovaŕk, A.3
  • 30
    • 33746441776 scopus 로고
    • Cloning and characterization of ribosomal RNA genes from wheat and barley
    • Gerlach WL, Bedbrook JR. 1979. Cloning and characterization of ribosomal RNA genes from wheat and barley. Nucleic Acids Res. 8: 4851-4855.
    • (1979) Nucleic Acids Res , vol.8 , pp. 4851-4855
    • Gerlach, W.L.1    Bedbrook, J.R.2
  • 32
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 41:95-98.
    • (1999) Nucleic Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 33
    • 33750955647 scopus 로고    scopus 로고
    • Non-concerted ITS evolution in Mammillaria (Cactaceae)
    • Harpke D, Peterson A. 2006. Non-concerted ITS evolution in Mammillaria (Cactaceae). Mol Phylogenet Evol. 41:579-593.
    • (2006) Mol Phylogenet Evol , vol.41 , pp. 579-593
    • Harpke, D.1    Peterson, A.2
  • 34
    • 42449146039 scopus 로고    scopus 로고
    • 5.8S motifs for the identification of pseudogenic ITS regions
    • Harpke D, Peterson A. 2008. 5.8S motifs for the identification of pseudogenic ITS regions. Botany 86:300-305.
    • (2008) Botany , vol.86 , pp. 300-305
    • Harpke, D.1    Peterson, A.2
  • 35
    • 0029278663 scopus 로고
    • Phylogenetic relationships of the monogenomic species of the wheat tribe, Triticeae (Poaceae), inferred from nuclear rDNA (internal transcribed spacer) sequences
    • Hsiao C, Chatterton NJ, Asay KH, Jensen KB. 1995. Phylogenetic relationships of the monogenomic species of the wheat tribe, Triticeae (Poaceae), inferred from nuclear rDNA (internal transcribed spacer) sequences. Genome 38:211-223.
    • (1995) Genome , vol.38 , pp. 211-223
    • Hsiao, C.1    Chatterton, N.J.2    Asay, K.H.3    Jensen, K.B.4
  • 36
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 37
    • 0028178007 scopus 로고
    • New 18S-26S ribosomal RNA gene loci: Chromosomal landmarks for the evolution of polyploid wheats
    • Jiang J, Gill BS. 1994. New 18S-26S ribosomal RNA gene loci: chromosomal landmarks for the evolution of polyploid wheats. Chromosoma 103:179-185.
    • (1994) Chromosoma , vol.103 , pp. 179-185
    • Jiang, J.1    Gill, B.S.2
  • 38
    • 0031292477 scopus 로고    scopus 로고
    • A conserved motif in the 5.8S ribosomal RNA (rRNA) gene is a useful diagnostic marker for plant internal transcribed spacer (ITS) sequences
    • Jobes DV, Thien LB. 1997. A conserved motif in the 5.8S ribosomal RNA (rRNA) gene is a useful diagnostic marker for plant internal transcribed spacer (ITS) sequences. Plant Mol Biol Rep. 15: 326-334.
    • (1997) Plant Mol Biol Rep , vol.15 , pp. 326-334
    • Jobes, D.V.1    Thien, L.B.2
  • 39
    • 33745628383 scopus 로고    scopus 로고
    • A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: An approximate molecular clock with life history effects
    • Kay KM, Whittall JB, Hodges SA. 2006. A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects. BMC Evol Biol. 6:36.
    • (2006) BMC Evol Biol , vol.6 , pp. 36
    • Kay, K.M.1    Whittall, J.B.2    Hodges, S.A.3
  • 40
    • 0028946212 scopus 로고
    • Intraspecific and interspecific variation in 5S RNA genes are decoupled in diploid wheat relatives
    • Kellogg EA, Appels R. 1995. Intraspecific and interspecific variation in 5S RNA genes are decoupled in diploid wheat relatives. Genetics 140: 325-343.
    • (1995) Genetics , vol.140 , pp. 325-343
    • Kellogg, E.A.1    Appels, R.2
  • 41
    • 34547936070 scopus 로고    scopus 로고
    • GISH analysis revealed new aspect of genomic constitution of Thinopyrum intermedium
    • Special issue
    • Kishii M, Wang RRC, Tsujimoto H. 2005. GISH analysis revealed new aspect of genomic constitution of Thinopyrum intermedium. Czech J Genet Plant. 41(Special issue):91-95.
    • (2005) Czech J Genet Plant , vol.41 , pp. 91-95
    • Kishii, M.1    Wang, R.R.C.2    Tsujimoto, H.3
  • 43
    • 77952901977 scopus 로고    scopus 로고
    • The evolution of the hexaploid grass Zingeria kochii (Mez) Tzvel. (2n = 12) was accompanied by complex hybridization and uniparental loss of ribosomal DNA
    • (11 co-authors)
    • Kotseruba V, Pistrick K, Blattner FR, et al. (11 co-authors). 2010. The evolution of the hexaploid grass Zingeria kochii (Mez) Tzvel. (2n = 12) was accompanied by complex hybridization and uniparental loss of ribosomal DNA. Mol Phylogenet Evol. 56:146-155.
    • (2010) Mol Phylogenet Evol , vol.56 , pp. 146-155
    • Kotseruba, V.1    Pistrick, K.2    Blattner, F.R.3
  • 44
    • 48849101871 scopus 로고    scopus 로고
    • Evolution of rDNA in Nicotiana allopolyploids: A potential link between rDNA homogenization and epigenetics
    • Kovaŕk A, Dadejová M, Lim YK, Chase MW, Clarkson JJ, Knapp S, Leitch AR 2008. Evolution of rDNA in Nicotiana allopolyploids: a potential link between rDNA homogenization and epigenetics. Ann Bot, 101, 815-823.
    • (2008) Ann Bot , vol.101 , pp. 815-823
    • Kovaŕk, A.1    Dadejová, M.2    Lim, Y.K.3    Chase, M.W.4    Clarkson, J.J.5    Knapp, S.6    Leitch, A.R.7
  • 46
    • 0004265002 scopus 로고    scopus 로고
    • Version 2.0. Pennsylvania (PA): Pennsylvania State University, University Park
    • Kumar S. 1996. PHYLTEST: phylogenetic hypothesis testing software. Version 2.0. Pennsylvania (PA): Pennsylvania State University, University Park.
    • (1996) PHYLTEST: Phylogenetic Hypothesis Testing Software
    • Kumar, S.1
  • 47
    • 17844406905 scopus 로고    scopus 로고
    • Chromosomal distribution of the 18S-5.8S-26S rDNA loci and heterogeneity of nuclear ITS regions in Thinopyrum intermedium (Poaceae: Triticeae)
    • Li DY, Ru YY, Zhang XY. 2004. Chromosomal distribution of the 18S-5.8S-26S rDNA loci and heterogeneity of nuclear ITS regions in Thinopyrum intermedium (Poaceae: Triticeae). Acta Bot Sin. 46: 1234-1241.
    • (2004) Acta Bot Sin. , vol.46 , pp. 1234-1241
    • Li, D.Y.1    Ru, Y.Y.2    Zhang, X.Y.3
  • 48
    • 0036802065 scopus 로고    scopus 로고
    • Physical localization of the 18S-5.8S-26S rDNA and sequence analysis of ITS regions in Thinopyrum ponticum (Poaceae: Triticeae): implications for concerted evolution
    • Li DY, Zhang XY. 2002. Physical localization of the 18S-5.8S-26S rDNA and sequence analysis of ITS regions in Thinopyrum ponticum (Poaceae: Triticeae): implications for concerted evolution. Ann Bot. 90:445-452.
    • (2002) Ann Bot , vol.90 , pp. 445-452
    • Li, D.Y.1    Zhang, X.Y.2
  • 49
    • 70349285125 scopus 로고    scopus 로고
    • Thinopyrum ponticum and Th. intermedium: The promising source of resistance to fungal and viral diseases of wheat
    • Li HJ, Wang XM. 2009. Thinopyrum ponticum and Th. intermedium: the promising source of resistance to fungal and viral diseases of wheat. J Genet Genomics. 36:557-565.
    • (2009) J Genet Genomics , vol.36 , pp. 557-565
    • Li, H.J.1    Wang, X.M.2
  • 50
    • 0030454390 scopus 로고    scopus 로고
    • Length variation in the nuclear ribosomal DNA internal transcribed spacer region of non-flowering seed plants
    • Liston A, Robinson WA, Oliphant JM, Alvarez-Buylla ER. 1996. Length variation in the nuclear ribosomal DNA internal transcribed spacer region of non-flowering seed plants. Syst Bot. 21:109-120.
    • (1996) Syst Bot , vol.21 , pp. 109-120
    • Liston, A.1    Robinson, W.A.2    Oliphant, J.M.3    Alvarez-Buylla, E.R.4
  • 51
    • 70350335757 scopus 로고    scopus 로고
    • Genomic distribution of a long terminal repeat (LTR) Sabrina-like retrotransposon in Triticeae species
    • Liu C, Yang ZJ, Jia JQ, Li GR, Zhou JP, Ren ZL. 2009. Genomic distribution of a long terminal repeat (LTR) Sabrina-like retrotransposon in Triticeae species. Cereal Res Commun. 37:363-372.
    • (2009) Cereal Res Commun , vol.37 , pp. 363-372
    • Liu, C.1    Yang, Z.J.2    Jia, J.Q.3    Li, G.R.4    Zhou, J.P.5    Ren, Z.L.6
  • 52
    • 33645367270 scopus 로고    scopus 로고
    • Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences
    • Liu Q, Ge S, Tang H, Zhang X, Zhu G, Lu BR. 2006. Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences. New Phytol. 170:411-420.
    • (2006) New Phytol , vol.170 , pp. 411-420
    • Liu, Q.1    Ge, S.2    Tang, H.3    Zhang, X.4    Zhu, G.5    Lu, B.R.6
  • 53
    • 0027180885 scopus 로고
    • Genome analysis of Elytrigia caespitosa, Lophopyrum nodosum, Pseudoroegneria geniculata ssp. scythica, and Thinopyrum intermedium (Triticeae: Gramineae)
    • Liu ZW, Wang RRC. 1993. Genome analysis of Elytrigia caespitosa, Lophopyrum nodosum, Pseudoroegneria geniculata ssp. scythica, and Thinopyrum intermedium (Triticeae: Gramineae). Genome 36: 102-111.
    • (1993) Genome , vol.36 , pp. 102-111
    • Liu, Z.W.1    Wang, R.R.C.2
  • 54
    • 0018814593 scopus 로고
    • Repeated genes in eukaryotes
    • Long EO, Dawid IB. 1980. Repeated genes in eukaryotes. Annu Rev Biochem. 49:727-764.
    • (1980) Annu Rev Biochem , vol.49 , pp. 727-764
    • Long, E.O.1    Dawid, I.B.2
  • 55
    • 0000764225 scopus 로고
    • Conspectus of the triticeae
    • Löve Á. 1984. Conspectus of the Triticeae. Feddes Repertorium 95: 425-521.
    • (1984) Feddes Repertorium , vol.95 , pp. 425-521
    • Á, L.1
  • 56
    • 34547760733 scopus 로고    scopus 로고
    • Recent natural hybridization between two allopolyploid wheatgrasses (Elytrigia, Poaceae): Ecological and evolutionary implications
    • Mahelka V, Fehrer J, Krahulec F, Jaroĺmová V. 2007. Recent natural hybridization between two allopolyploid wheatgrasses (Elytrigia, Poaceae): ecological and evolutionary implications. Ann Bot. 100: 249-260.
    • (2007) Ann Bot , vol.100 , pp. 249-260
    • Mahelka, V.1    Fehrer, J.2    Krahulec, F.3    Jaroĺmová, V.4
  • 57
    • 77952843033 scopus 로고    scopus 로고
    • Gene capture from across the grass family in the allohexaploid Elymus repens (L.) Gould (Poaceae, Triticeae) as evidenced by ITS, GBSSI, and molecular cytogenetics
    • Mahelka V, Kopecký D. 2010. Gene capture from across the grass family in the allohexaploid Elymus repens (L.) Gould (Poaceae, Triticeae) as evidenced by ITS, GBSSI, and molecular cytogenetics.Mol Biol Evol. 27:1370-1390.
    • (2010) Mol Biol Evol , vol.27 , pp. 1370-1390
    • Mahelka, V.1    Kopecký, D.2
  • 58
    • 79955974153 scopus 로고    scopus 로고
    • On the genome constitution and evolution of intermediate wheatgrass (Thinopyrum intermedium: Poaceae, Triticeae)
    • Mahelka V, Kopecký D, Pas?tová L. 2011. On the genome constitution and evolution of intermediate wheatgrass (Thinopyrum intermedium: Poaceae, Triticeae). BMC Evol Biol. 11:127.
    • (2011) BMC Evol Biol , vol.11 , pp. 127
    • Mahelka, V.1    Kopecký, D.2    Pastová, L.3
  • 59
    • 27644583457 scopus 로고    scopus 로고
    • Genome size discriminates between closely related taxa Elytrigia repens and E. intermedia (Poaceae: Triticeae) and their hybrid
    • Mahelka V, Suda J, Jarolímová V, Trávníc?ek P, Krahulec F. 2005. Genome size discriminates between closely related taxa Elytrigia repens and E. intermedia (Poaceae: Triticeae) and their hybrid. Folia Geobot. 40: 367-384.
    • (2005) Folia Geobot , vol.40 , pp. 367-384
    • Mahelka, V.1    Suda, J.2    Jarolímová, V.3    Trávnícek, P.4    Krahulec, F.5
  • 60
    • 77956868619 scopus 로고    scopus 로고
    • Similar patterns of rDNA evolution in synthetic and recently formed natural populations of Tragopogon (Asteraceae) allotetraploids
    • Malinská H, Tate JA, Matyásek R, Leitch AR, Soltis DE, Soltis PS, Kovaŕk A. 2010. Similar patterns of rDNA evolution in synthetic and recently formed natural populations of Tragopogon (Asteraceae) allotetraploids. BMC Evol Biol. 10:291.
    • (2010) BMC Evol Biol , vol.10 , pp. 291
    • Malinská, H.1    Tate, J.A.2    Matyásek, R.3    Leitch, A.R.4    Soltis, D.E.5    Soltis, P.S.6    Kovaŕk, A.7
  • 61
    • 0034782104 scopus 로고    scopus 로고
    • Why nuclear ribosomal DNA spacers (ITS) tell different stories in Quercus
    • Mayol M, Rosselló JA. 2001. Why nuclear ribosomal DNA spacers (ITS) tell different stories in Quercus. Mol Phylogenet Evol. 19: 167-176.
    • (2001) Mol Phylogenet Evol , vol.19 , pp. 167-176
    • Mayol, M.1    Rosselló, J.A.2
  • 62
    • 0035146034 scopus 로고    scopus 로고
    • Three divergent rDNA clusters predate the species divergence in Quercus petraea (Matt.) Liebl. and Quercus robur L
    • Muir G, Fleming CC, Schlötterer C. 2001. Three divergent rDNA clusters predate the species divergence in Quercus petraea (Matt.) Liebl. and Quercus robur L. Mol Biol Evol. 18:112-119.
    • (2001) Mol Biol Evol , vol.18 , pp. 112-119
    • Muir, G.1    Fleming, C.C.2    Schlötterer, C.3
  • 63
  • 65
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • Nei M, Rooney AP. 2005. Concerted and birth-and-death evolution of multigene families. Annu Rev Genet. 39:121-152.
    • (2005) Annu Rev Genet , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 67
    • 84855829663 scopus 로고    scopus 로고
    • RNA polymerase III transcription control elements: Themes and variations
    • Orioli A, Pascali C, Pagano A, Teichmann M, Dieci G. 2012. RNA polymerase III transcription control elements: themes and variations. Gene 493:185-194.
    • (2012) Gene , vol.493 , pp. 185-194
    • Orioli, A.1    Pascali, C.2    Pagano, A.3    Teichmann, M.4    Dieci, G.5
  • 68
    • 0023657449 scopus 로고
    • The 5S gene internal control region is composed of three distinct sequence elements, organized as two functional domains with variable spacing
    • Pieler T, Hamm J, Roeder RG. 1987. The 5S gene internal control region is composed of three distinct sequence elements, organized as two functional domains with variable spacing. Cell 48:91-100.
    • (1987) Cell , vol.48 , pp. 91-100
    • Pieler, T.1    Hamm, J.2    Roeder, R.G.3
  • 69
    • 79957661501 scopus 로고    scopus 로고
    • The 5S rDNA family evolves through concerted and birth-and-death evolution in fish genomes: An example from freshwater stingrays
    • Pinhal D, Yoshimura TS, Araki CS, Martins C. 2011. The 5S rDNA family evolves through concerted and birth-and-death evolution in fish genomes: an example from freshwater stingrays. BMC Evol Biol. 11: 151.
    • (2011) BMC Evol Biol , vol.11 , pp. 151
    • Pinhal, D.1    Yoshimura, T.S.2    Araki, C.S.3    Martins, C.4
  • 70
    • 80053180357 scopus 로고    scopus 로고
    • Next generation sequencing reveals evidence of genome downsizing and elimination of paternally derived repetitive DNA sequences in tobacco
    • 11 co-authors
    • Renny-Byfield S, Chester M, Kovaŕk A, et al. (11 co-authors). 2011. Next generation sequencing reveals evidence of genome downsizing and elimination of paternally derived repetitive DNA sequences in tobacco. Mol Biol Evol. 28:2843-2854.
    • (2011) Mol Biol Evol , vol.28 , pp. 2843-2854
    • Renny-Byfield, S.1    Chester, M.2    Kovaŕk, A.3
  • 71
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 72
    • 4143127619 scopus 로고    scopus 로고
    • Mechanisms underlying the evolution and maintenance of functionally heterogeneous 18S rRNA genes in Apicomplexans
    • Rooney AP. 2004. Mechanisms underlying the evolution and maintenance of functionally heterogeneous 18S rRNA genes in Apicomplexans. Mol Biol Evol. 21:1704-1711.
    • (2004) Mol Biol Evol , vol.21 , pp. 1704-1711
    • Rooney, A.P.1
  • 73
    • 17044401340 scopus 로고    scopus 로고
    • Evolution of a large ribosomal RNA multigene family in filamentous fungi: Birth and death of a concerted evolution paradigm
    • Rooney AP, Ward TJ. 2005. Evolution of a large ribosomal RNA multigene family in filamentous fungi: birth and death of a concerted evolution paradigm. Proc Natl Acad Sci USA. 102:5084-5089.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 5084-5089
    • Rooney, A.P.1    Ward, T.J.2
  • 75
    • 0031838692 scopus 로고    scopus 로고
    • Intraindividual and interspecies variation in the 5S rDNA of coregonid fish
    • Sajdak LS, Reed KM, Phillips RB. 1998. Intraindividual and interspecies variation in the 5S rDNA of coregonid fish. J Mol Evol. 46:680-688.
    • (1998) J Mol Evol , vol.46 , pp. 680-688
    • Sajdak, L.S.1    Reed, K.M.2    Phillips, R.B.3
  • 77
    • 34250086950 scopus 로고
    • Frequent duplication and deletion events in the 5S RNA genes and the associated spacer regions of the Triticeae
    • Scoles GJ, Gill BX, Xin Z-Y, Clarke BC, McIntyre CL, Chapman C, Appels R. 1988. Frequent duplication and deletion events in the 5S RNA genes and the associated spacer regions of the Triticeae. Plant Syst Evol. 160:105-122.
    • (1988) Plant Syst Evol , vol.160 , pp. 105-122
    • Scoles, G.J.1    Gill, B.X.2    Xin, Z.-Y.3    Clarke, B.C.4    McIntyre, C.L.5    Chapman, C.6    Appels, R.7
  • 78
    • 38549087890 scopus 로고    scopus 로고
    • The ITS2 database II: Homology modelling RNA structure for molecular systematics
    • Selig C, Wolf M, Müller T, Dandekar T, Schultz J. 2008. The ITS2 database II: homology modelling RNA structure for molecular systematics. Nucleic Acids Res. 36:D377-D380.
    • (2008) Nucleic Acids Res , vol.36
    • Selig, C.1    Wolf, M.2    Müller, T.3    Dandekar, T.4    Schultz, J.5
  • 79
    • 15944409560 scopus 로고    scopus 로고
    • Preferential elimination of repeated DNA sequences from the paternal, Nicotiana tomentosiformis genome donor of a synthetic, allotetraploid tobacco
    • Skalická K, Lim KY, Matyásek R, Matzke M, Leitch AR, Kovaŕk A. 2005. Preferential elimination of repeated DNA sequences from the paternal, Nicotiana tomentosiformis genome donor of a synthetic, allotetraploid tobacco. New Phytol. 166:291-303.
    • (2005) New Phytol , vol.166 , pp. 291-303
    • Skalická, K.1    Lim, K.Y.2    Matyásek, R.3    Matzke, M.4    Leitch, A.R.5    Kovaŕk, A.6
  • 80
    • 59449106678 scopus 로고    scopus 로고
    • Specific features of 5S rRNA structure-its interactions with macromolecules and possible functions
    • Smirnov AV, Entelis NS, Krasheninnikov IA, Martin R, Tarassov IA. 2008. Specific features of 5S rRNA structure-its interactions with macromolecules and possible functions. Biochemistry 73:1418-1437.
    • (2008) Biochemistry , vol.73 , pp. 1418-1437
    • Smirnov, A.V.1    Entelis, N.S.2    Krasheninnikov, I.A.3    Martin, R.4    Tarassov, I.A.5
  • 81
    • 34250880169 scopus 로고    scopus 로고
    • Evolutionary rates vary among rRNA structural elements
    • Smit S, Widmann J, Knight R. 2007. Evolutionary rates vary among rRNA structural elements. Nucleic Acids Res. 35:3339-3354.
    • (2007) Nucleic Acids Res , vol.35 , pp. 3339-3354
    • Smit, S.1    Widmann, J.2    Knight, R.3
  • 82
    • 0000744875 scopus 로고
    • Multiple origins of the allotetraploid Tragopogon mirus (Compositae): RDNA evidence
    • Soltis PS, Soltis DE. 1991. Multiple origins of the allotetraploid Tragopogon mirus (Compositae): rDNA evidence. Syst Bot. 16: 407-413.
    • (1991) Syst Bot , vol.16 , pp. 407-413
    • Soltis, P.S.1    Soltis, D.E.2
  • 84
    • 0027453388 scopus 로고
    • Simple methods for testing molecular clock hypothesis
    • Tajima F. 1993. Simple methods for testing molecular clock hypothesis. Genetics 135:599-607.
    • (1993) Genetics , vol.135 , pp. 599-607
    • Tajima, F.1
  • 85
    • 0029100727 scopus 로고
    • Phylogenetic test of the molecular clock and linearized tree
    • Takezaki N, Rzhetsky A, Nei M. 1995. Phylogenetic test of the molecular clock and linearized tree. Mol Biol Evol. 12:823-833.
    • (1995) Mol Biol Evol , vol.12 , pp. 823-833
    • Takezaki, N.1    Rzhetsky, A.2    Nei, M.3
  • 86
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 87
    • 79954997907 scopus 로고    scopus 로고
    • A new long terminal repeat (LTR) sequence allows to identify J genome from JS and St genomes of Thinopyrum intermedium
    • Tang ZX, Yang ZJ, Fu SL, Yang MY, Li GR, Zhang HQ, Tan FQ, Ren Z. 2011. A new long terminal repeat (LTR) sequence allows to identify J genome from JS and St genomes of Thinopyrum intermedium. J Appl Genet. 52:31-33.
    • (2011) J Appl Genet , vol.52 , pp. 31-33
    • Tang, Z.X.1    Yang, Z.J.2    Fu, S.L.3    Yang, M.Y.4    Li, G.R.5    Zhang, H.Q.6    Tan, F.Q.7    Ren, Z.8
  • 88
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 89
    • 0033402851 scopus 로고    scopus 로고
    • Characterization of Dasypyrum villosum (L.) Candargy chromosomes by fluorescent in situ hybridization
    • Uslu E, Reader SM, Miller TE. 1999. Characterization of Dasypyrum villosum (L.) Candargy chromosomes by fluorescent in situ hybridization. Hereditas 131:129-134.
    • (1999) Hereditas , vol.131 , pp. 129-134
    • Uslu, E.1    Reader, S.M.2    Miller, T.E.3
  • 90
    • 0019791882 scopus 로고
    • The nucleotide sequence of the intergenic region between the 5.8S and 26S rRNA genes of the yeast ribosomal RNA operon. Possible implications for the interaction between 5.8S and 26S rRNA and the processing of the primary transcript
    • Veldman MG, Klootwijk J, van Heerikhuizen H, Planta RJ. 1981. The nucleotide sequence of the intergenic region between the 5.8S and 26S rRNA genes of the yeast ribosomal RNA operon. Possible implications for the interaction between 5.8S and 26S rRNA and the processing of the primary transcript. Nucleic Acids Res. 9:4847-4862.
    • (1981) Nucleic Acids Res , vol.9 , pp. 4847-4862
    • Veldman, M.G.1    Klootwijk, J.2    Van Heerikhuizen, H.3    Planta, R.J.4
  • 91
    • 79959526677 scopus 로고    scopus 로고
    • The 5S rDNA gene family in mollusks: Characterization of transcriptional regulatory regions, prediction of secondary structures, and longterm evolution, with special attention to Mytilidae mussels
    • Vizoso M, Vierna J, González-Tizón AM, Martínez-Lage A. 2011. The 5S rDNA gene family in mollusks: characterization of transcriptional regulatory regions, prediction of secondary structures, and longterm evolution, with special attention to Mytilidae mussels. J Hered. 102:433-447.
    • (2011) J Hered , vol.102 , pp. 433-447
    • Vizoso, M.1    Vierna, J.2    González-Tizón, A.M.3    Martínez-Lage, A.4
  • 92
    • 0033059265 scopus 로고    scopus 로고
    • Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum
    • Volkov RA, Borisjuk NV, Panchuk II, Schweizer D, Hemleben V. 1999. Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum. Mol Biol Evol. 16:311-320.
    • (1999) Mol Biol Evol , vol.16 , pp. 311-320
    • Volkov, R.A.1    Borisjuk, N.V.2    Panchuk, I.I.3    Schweizer, D.4    Hemleben, V.5
  • 93
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • Wendel JF. 2000. Genome evolution in polyploids. Plant Mol Biol. 42: 225-249.
    • (2000) Plant Mol Biol , vol.42 , pp. 225-249
    • Wendel, J.F.1
  • 94
    • 0028917850 scopus 로고
    • Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium)
    • Wendel JF, Schnabel A, Seelanan T. 1995. Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proc Natl Acad Sci USA. 92:280-284.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 280-284
    • Wendel, J.F.1    Schnabel, A.2    Seelanan, T.3
  • 95
    • 80052708667 scopus 로고    scopus 로고
    • Restless 5S: The re-arrangement( s) and evolution of the nuclear ribosomal DNA in land plants
    • Wicke S, Costa A, Muñoz J, Quandt D. 2011. Restless 5S: the re-arrangement( s) and evolution of the nuclear ribosomal DNA in land plants. Mol Phylogenet Evol. 61:321-332.
    • (2011) Mol Phylogenet Evol , vol.61 , pp. 321-332
    • Wicke, S.1    Costa, A.2    Muñoz, J.3    Quandt, D.4
  • 96
    • 77953870737 scopus 로고    scopus 로고
    • Genome constitutions of Pseudoroegneria geniculata, P. geniculata ssp. scythica and P. geniculata ssp. pruinifera (Poaceae: Triticeae) revealed by genomic in situ hybridization
    • Yu H, Zhang C, Ding C, Wang X, Zhang H, Zhou Y. 2010. Genome constitutions of Pseudoroegneria geniculata, P. geniculata ssp. scythica and P. geniculata ssp. pruinifera (Poaceae: Triticeae) revealed by genomic in situ hybridization. Acta Physiol Plant. 32: 645-650.
    • (2010) Acta Physiol Plant , vol.32 , pp. 645-650
    • Yu, H.1    Zhang, C.2    Ding, C.3    Wang, X.4    Zhang, H.5    Zhou, Y.6
  • 97
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1


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