-
1
-
-
0025183708
-
Basic local alignment search tool
-
PMID:2231712
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410. PMID:2231712.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0006831643
-
The 5S DNA units of bread wheat (Triticum aestivum L.)
-
doi:10.1007/BF00940802
-
Appels, R., Baum, B.R., and Clarke, B.C. 1992. The 5S DNA units of bread wheat (Triticum aestivum L.). Plant Syst. Evol. 183: 183-194. doi:10.1007/BF00940802.
-
(1992)
Plant Syst. Evol
, vol.183
, pp. 183-194
-
-
Appels, R.1
Baum, B.R.2
Clarke, B.C.3
-
3
-
-
34047267637
-
A canonical decomposition theory for metrics on a finite set
-
doi:10.1016/0001- 8708(92)90061-O
-
Bandelt, H.-J., and Dress, A.W.M. 1992. A canonical decomposition theory for metrics on a finite set. Adv. Math. 92: 47-105. doi:10.1016/0001- 8708(92)90061-O.
-
(1992)
Adv. Math
, vol.92
, pp. 47-105
-
-
Bandelt, H.-J.1
Dress, A.W.M.2
-
4
-
-
0028676173
-
The molecular diversity of the 5S rRNA gene in barley (Hordeum vulgare)
-
PMID:7828846, doi:10.1139/g94-140
-
Baum, B.R., and Johnson, D.A. 1994. The molecular diversity of the 5S rRNA gene in barley (Hordeum vulgare). Genome, 37: 992-998. doi:10.1139/g94-140. PMID:7828846.
-
(1994)
Genome
, vol.37
, pp. 992-998
-
-
Baum, B.R.1
Johnson, D.A.2
-
5
-
-
0030087902
-
-
Baum, B.R., and Johnson, D.A. 1996. The 5S rRNA gene units in ancestral two-row barley (Hordeum spontaneum C. Koch) and bulbous barley (H. bulbosum L.): sequence analysis and phylogenetic relationships with the 5S rDNA units in cultivated barley (H. vulgare L.). Genome, 39: 140-149. doi:10.1139/g96-019. PMID:8851803.
-
Baum, B.R., and Johnson, D.A. 1996. The 5S rRNA gene units in ancestral two-row barley (Hordeum spontaneum C. Koch) and bulbous barley (H. bulbosum L.): sequence analysis and phylogenetic relationships with the 5S rDNA units in cultivated barley (H. vulgare L.). Genome, 39: 140-149. doi:10.1139/g96-019. PMID:8851803.
-
-
-
-
6
-
-
0032193634
-
The 5S rRNA gene in sea barley (Hordeum marinum Hudson sensu lato): Sequence variation among repeat units and relationship to the X haplome in barley (Hordeum)
-
PMID:9809436, doi:10.1139/gen-41-5-652
-
Baum, B.R., and Johnson, D.A. 1998. The 5S rRNA gene in sea barley (Hordeum marinum Hudson sensu lato): sequence variation among repeat units and relationship to the X haplome in barley (Hordeum). Genome, 41: 652-661. doi:10.1139/gen-41-5-652. PMID:9809436.
-
(1998)
Genome
, vol.41
, pp. 652-661
-
-
Baum, B.R.1
Johnson, D.A.2
-
7
-
-
0037728996
-
The South African Hordeum capense is more closely related to some American Hordeum species than to the European Hordeum secalinum: A perspective based on the 5S DNA units (Triticeae: Poaceae)
-
doi:10.1139/b03-001
-
Baum, B.R., and Johnson, D.A. 2003. The South African Hordeum capense is more closely related to some American Hordeum species than to the European Hordeum secalinum: a perspective based on the 5S DNA units (Triticeae: Poaceae). Can. J. Bot. 81: 1-11. doi:10.1139/b03-001.
-
(2003)
Can. J. Bot
, vol.81
, pp. 1-11
-
-
Baum, B.R.1
Johnson, D.A.2
-
8
-
-
34250024660
-
The 5S DNA sequences in Hordeum bogdanii and in the H. brevisubulatum complex, and the evolution and the geographic dispersal of the diploid Hordeum species (Triticeae: Poaceae)
-
PMID:17546066, doi:10.1139/G06-132
-
Baum, B.R., and Johnson, D.A. 2007. The 5S DNA sequences in Hordeum bogdanii and in the H. brevisubulatum complex, and the evolution and the geographic dispersal of the diploid Hordeum species (Triticeae: Poaceae). Genome, 50: 1-14. doi:10.1139/G06-132. PMID:17546066.
-
(2007)
Genome
, vol.50
, pp. 1-14
-
-
Baum, B.R.1
Johnson, D.A.2
-
9
-
-
0036303420
-
Defining groups among multicopy genes prior to inferring phylogeny, with special emphasis on the Triticeae (Poaceae)
-
PMID:12152325, doi:10.1111/j.1601-5223. 2001.00123.x
-
Baum, B.R., Johnson, D.A., and Bailey, L.G. 2001. Defining groups among multicopy genes prior to inferring phylogeny, with special emphasis on the Triticeae (Poaceae). Hereditas, 135: 123-138. doi:10.1111/j.1601-5223. 2001.00123.x. PMID:12152325.
-
(2001)
Hereditas
, vol.135
, pp. 123-138
-
-
Baum, B.R.1
Johnson, D.A.2
Bailey, L.G.3
-
10
-
-
84957000934
-
NeighborNet: An agglomerative method for the construction of planar phylogenetic networks
-
Edited by R. Guigó and D. Gusfield. Springer-Verlag, Berlin. pp
-
Bryant, D., and Moulton, V. 2002. NeighborNet: An agglomerative method for the construction of planar phylogenetic networks. In Algorithms in bioinformatics. Lecture Notes in Computer Science, Vol. 2452. Edited by R. Guigó and D. Gusfield. Springer-Verlag, Berlin. pp. 375-391.
-
(2002)
Algorithms in bioinformatics. Lecture Notes in Computer Science
, vol.2452
, pp. 375-391
-
-
Bryant, D.1
Moulton, V.2
-
11
-
-
33644783716
-
After the duplication: Gene loss and adaptation in Saccharomyces genomes
-
PMID:16322519, doi:10.1534/genetics.105.048900
-
Cliften, P.E., Fulton, R.S., Wilson, R.K., and Johnston, M. 2006. After the duplication: gene loss and adaptation in Saccharomyces genomes. Genetics, 172: 863-872. doi:10.1534/genetics.105.048900. PMID:16322519.
-
(2006)
Genetics
, vol.172
, pp. 863-872
-
-
Cliften, P.E.1
Fulton, R.S.2
Wilson, R.K.3
Johnston, M.4
-
12
-
-
49249125926
-
Genome relations of diploid Agropyron libanoticum with diploid and autotetraploid Agropyron stipifolium
-
doi:10.1086/336791
-
Dewey, D.R. 1975. Genome relations of diploid Agropyron libanoticum with diploid and autotetraploid Agropyron stipifolium. Bot. Gaz. 136: 116-121. doi:10.1086/336791.
-
(1975)
Bot. Gaz
, vol.136
, pp. 116-121
-
-
Dewey, D.R.1
-
13
-
-
0001678358
-
The genomic system of classification as a guide to intergeneric hybridization with perennial Triticeae
-
Edited by J.P. Gustafson. Plenum Press, New York. pp
-
Dewey, D.R. 1984. The genomic system of classification as a guide to intergeneric hybridization with perennial Triticeae. In Gene manipulation in plant improvement. Edited by J.P. Gustafson. Plenum Press, New York. pp. 209-279.
-
(1984)
Gene manipulation in plant improvement
, pp. 209-279
-
-
Dewey, D.R.1
-
14
-
-
0041508533
-
Chloroplast-expressed glutamine synthetase in Glycine and related Leguminosae: Phylogeny, gene duplication, and ancient polyploidy
-
Doyle, J.J., Doyle, J.L., and Harbison, C. 2003. Chloroplast-expressed glutamine synthetase in Glycine and related Leguminosae: phylogeny, gene duplication, and ancient polyploidy. Syst. Bot. 28: 567-577.
-
(2003)
Syst. Bot
, vol.28
, pp. 567-577
-
-
Doyle, J.J.1
Doyle, J.L.2
Harbison, C.3
-
15
-
-
84959743928
-
Methods for computing Wagner trees
-
doi:10.2307/2412028
-
Farris, J.S. 1970. Methods for computing Wagner trees. Syst. Zool. 19: 83-92. doi:10.2307/2412028.
-
(1970)
Syst. Zool
, vol.19
, pp. 83-92
-
-
Farris, J.S.1
-
16
-
-
0004548891
-
Observationes et descriptions botanicae. Nov. Comm. Petrop
-
Gaertner, J. 1770. Observationes et descriptions botanicae. Nov. Comm. Petrop. 14: 531-547.
-
(1770)
, vol.14
, pp. 531-547
-
-
Gaertner, J.1
-
17
-
-
0020286044
-
Branch and bound algorithms to determine minimal evolutionary trees
-
doi:10.1016/0025-5564(82)90027-X
-
Hendy, M.D., and Penny, D. 1982. Branch and bound algorithms to determine minimal evolutionary trees. Math. Biosci. 59: 277-290. doi:10.1016/0025-5564(82)90027-X.
-
(1982)
Math. Biosci
, vol.59
, pp. 277-290
-
-
Hendy, M.D.1
Penny, D.2
-
18
-
-
49249089076
-
-
Hitchcock, A.S. 1951. Manual of grasses of the United States. 2nd ed. Revised by A. Chase. USDA Misc. Publ. No. 200. Washington, D.C.
-
Hitchcock, A.S. 1951. Manual of grasses of the United States. 2nd ed. Revised by A. Chase. USDA Misc. Publ. No. 200. Washington, D.C.
-
-
-
-
19
-
-
0002054996
-
Karyotype analysis and genome relationships of 22 diploid species in the tribe Triticeae
-
Hsiao, C., Wang, R.R.-C., and Dewey, D.R. 1986. Karyotype analysis and genome relationships of 22 diploid species in the tribe Triticeae. Can. J. Genet. Cytol. 28: 109-120.
-
(1986)
Can. J. Genet. Cytol
, vol.28
, pp. 109-120
-
-
Hsiao, C.1
Wang, R.R.-C.2
Dewey, D.R.3
-
20
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
PMID:16221896, doi:10.1093/molbev/ msj030
-
Huson, D.H., and Bryant, D. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23: 254-267. doi:10.1093/molbev/ msj030. PMID:16221896.
-
(2006)
Mol. Biol. Evol
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
21
-
-
15944419185
-
The effect of paralogous lineages on the application of reconciliation analysis by cophylogeny mapping
-
PMID:15805015, doi:10.1080/10635150590905911
-
Jackson, A.P. 2005. The effect of paralogous lineages on the application of reconciliation analysis by cophylogeny mapping. Syst. Biol. 54: 127-145. doi:10.1080/10635150590905911. PMID:15805015.
-
(2005)
Syst. Biol
, vol.54
, pp. 127-145
-
-
Jackson, A.P.1
-
22
-
-
0142124263
-
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
-
PMID:14525925, doi:10.1101/gr.1589103
-
Krylov, D.M., Wolf, Y.I., Rogozin, I.B., and Koonin, E.V. 2003. Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution. Genome Res. 13: 2229-2235. doi:10.1101/gr.1589103. PMID:14525925.
-
(2003)
Genome Res
, vol.13
, pp. 2229-2235
-
-
Krylov, D.M.1
Wolf, Y.I.2
Rogozin, I.B.3
Koonin, E.V.4
-
23
-
-
0036918868
-
The impact of polyploidy on grass genome evolution
-
PMID:12481041, doi:10.1104/pp.015727
-
Levy, A.A., and Feldman, M. 2002. The impact of polyploidy on grass genome evolution. Plant Physiol. 130: 1587-1593. doi:10.1104/pp.015727. PMID:12481041.
-
(2002)
Plant Physiol
, vol.130
, pp. 1587-1593
-
-
Levy, A.A.1
Feldman, M.2
-
24
-
-
0343256404
-
Poaceae-Triticeae-americanae
-
doi:10.2307/1220319
-
Löve, Á. 1980. Poaceae-Triticeae-americanae. Taxon, 29: 166-169. doi:10.2307/1220319.
-
(1980)
Taxon
, vol.29
, pp. 166-169
-
-
Löve, A.1
-
25
-
-
0000764225
-
Conspectus of the Triticeae
-
Löve, Á. 1984. Conspectus of the Triticeae. Feddes Repert. 95: 425-521.
-
(1984)
Feddes Repert
, vol.95
, pp. 425-521
-
-
Löve, A.1
-
26
-
-
0005814023
-
Mathematical model for studying genetic variation in terms of restriction endonucleases
-
PMID:291943, doi:10.1073/pnas.76.10.5269
-
Nei, M., and Li, W.-H. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U.S.A. 76: 5269-5273. doi:10.1073/pnas.76.10.5269. PMID:291943.
-
(1979)
Proc. Natl. Acad. Sci. U.S.A
, vol.76
, pp. 5269-5273
-
-
Nei, M.1
Li, W.-H.2
-
27
-
-
49249095658
-
-
Nevski, S.A. 1934. Schedae ad Herbarium Florae Asiae Mediae, Fasc. XXI-XXIII. Tr. Sredne-Aziat. Gos. Univ., Ser. 8b, Bot. 17: 60 [under 547b. Elytrigia trichophora (Link) Nevski].
-
Nevski, S.A. 1934. Schedae ad Herbarium Florae Asiae Mediae, Fasc. XXI-XXIII. Tr. Sredne-Aziat. Gos. Univ., Ser. 8b, Bot. 17: 60 [under 547b. Elytrigia trichophora (Link) Nevski].
-
-
-
-
28
-
-
49249112321
-
Tr. Bot. Inst
-
Elytrigia Desv. Sect. II. Pseudoroegneria Nevski 77-78
-
Nevski, S.A. 1936. Tr. Bot. Inst. Akad. Nauk SSSR, 1: 33-85 [Elytrigia Desv. Sect. II. Pseudoroegneria Nevski 77-78].
-
(1936)
Akad. Nauk SSSR
, vol.1
, pp. 33-85
-
-
Nevski, S.A.1
-
30
-
-
0346740396
-
-
Available from, accessed January 2007
-
Page, R.D.M. 1995. TreeMap 1.0 user's guide. Available from http://taxonomy.zoology.gla.ac.uk/rod/treemap/ch1.html [accessed January 2007].
-
(1995)
TreeMap 1.0 user's guide
-
-
Page, R.D.M.1
-
31
-
-
0030203863
-
TREEVIEW: An application to display phylogenetic trees on personal computers
-
PMID:8902363
-
Page, R.D.M. 1996. TREEVIEW: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12: 357-358. PMID:8902363.
-
(1996)
Comput. Appl. Biosci
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
-
32
-
-
0003145993
-
Reconciled trees and incongruent gene and species trees
-
Edited by B. Mirkin, F.R. McMorris, F.S. Roberts, and A. Rzhetsky. American Mathematical Society, Providence, R.I. pp
-
Page, R.D.M. and Charleston, M.A. 1997. Reconciled trees and incongruent gene and species trees. In Mathematical hierarchies in biology. Vol. 37. Edited by B. Mirkin, F.R. McMorris, F.S. Roberts, and A. Rzhetsky. American Mathematical Society, Providence, R.I. pp. 57-70.
-
(1997)
Mathematical hierarchies in biology
, vol.37
, pp. 57-70
-
-
Page, R.D.M.1
Charleston, M.A.2
-
33
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
PMID:3447015
-
Saitou, N., and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425. PMID:3447015.
-
(1987)
Mol. Biol. Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
34
-
-
33645023614
-
Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
-
PMID:16541074, doi:10.1038/nature04562
-
Scannell, D.R., Byrne, K.P., Gordon, J.L., Wong, S., and Wolfe, K.H. 2006. Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature (London), 440: 341-345. doi:10.1038/nature04562. PMID:16541074.
-
(2006)
Nature (London)
, vol.440
, pp. 341-345
-
-
Scannell, D.R.1
Byrne, K.P.2
Gordon, J.L.3
Wong, S.4
Wolfe, K.H.5
-
35
-
-
0347257400
-
Artificial and natural hybrids in the Gramineae, tribe Hordeae. V. Diploid hybrids of Agropyron
-
doi:10.2307/2438528
-
Stebbins, G.L., and Punn, F.T. 1953. Artificial and natural hybrids in the Gramineae, tribe Hordeae. V. Diploid hybrids of Agropyron. Am. J. Bot. 40: 444-449. doi:10.2307/2438528.
-
(1953)
Am. J. Bot
, vol.40
, pp. 444-449
-
-
Stebbins, G.L.1
Punn, F.T.2
-
36
-
-
49249113306
-
-
Swofford, D.L. 1998. PAUP*. Phylogenetic Analysis Using Parsimony *and Other Methods, Version 4. Sinauer Associates, Sunderland, Mass
-
Swofford, D.L. 1998. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Mass.
-
-
-
-
37
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
PMID:7984417, doi:10.1093/nar/22.22.4673
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680. doi:10.1093/nar/22.22.4673. PMID:7984417.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
38
-
-
49249108009
-
-
Tsvelev, N.N. 1976. Zlaki SSSR [Grasses of the Soviet Union]. Nauka, Leningrad [Translation in English by Amerind Publishing Co. Pvt. Ltd., New Delhi, for Smithsonian Institution Libraries and National Science Foundation, Washington, D.C., 1983].
-
Tsvelev, N.N. 1976. Zlaki SSSR [Grasses of the Soviet Union]. Nauka, Leningrad [Translation in English by Amerind Publishing Co. Pvt. Ltd., New Delhi, for Smithsonian Institution Libraries and National Science Foundation, Washington, D.C., 1983].
-
-
-
-
39
-
-
0005226892
-
An assessment of genome analysis based on chromosome pairing in hybrids of perennial Triticeae
-
doi:10.1139/g89-427
-
Wang, R.R.-C. 1989. An assessment of genome analysis based on chromosome pairing in hybrids of perennial Triticeae. Genome, 32: 179-189. doi:10.1139/g89-427.
-
(1989)
Genome
, vol.32
, pp. 179-189
-
-
Wang, R.R.-C.1
-
40
-
-
0026766047
-
Genome relationships in the perennial Triticeae based on diploid hybrids and beyond
-
doi:10.1111/j.1601-5223.1992.tb00217.x
-
Wang, R.R.-C. 1992. Genome relationships in the perennial Triticeae based on diploid hybrids and beyond. Hereditas, 116: 133-136. doi:10.1111/j.1601-5223.1992.tb00217.x.
-
(1992)
Hereditas
, vol.116
, pp. 133-136
-
-
Wang, R.R.-C.1
-
41
-
-
0029177202
-
Genome- and species-specific markers and genome relationships of diploid perennial species in Triticeae based on RAPD analyses
-
PMID:18470242, doi:10.1139/g95-161
-
Wei, J.Z., and Wang, R.R.-C. 1995. Genome- and species-specific markers and genome relationships of diploid perennial species in Triticeae based on RAPD analyses. Genome, 38: 1230-1236. doi:10.1139/g95-161. PMID:18470242.
-
(1995)
Genome
, vol.38
, pp. 1230-1236
-
-
Wei, J.Z.1
Wang, R.R.-C.2
-
42
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: Nucleotide sequence of M13mp18 and pUC19 vectors
-
PMID:2985470, doi:10.1016/0378-1119(85)90120-9
-
Yanisch-Perron, C., Vieira, J., and Messing, J. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequence of M13mp18 and pUC19 vectors. Gene, 33: 103-119. doi:10.1016/0378-1119(85)90120-9. PMID:2985470.
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanisch-Perron, C.1
Vieira, J.2
Messing, J.3
-
43
-
-
20444456356
-
Douglasdeweya: A new genus, with a new species and a new combination (Triticeae: Poaceae)
-
doi:10.1139/b05-018
-
Yen, C., Yang, J.L., and Baum, B.R. 2005. Douglasdeweya: a new genus, with a new species and a new combination (Triticeae: Poaceae). Can. J. Bot. 83: 413-419. doi:10.1139/b05-018.
-
(2005)
Can. J. Bot
, vol.83
, pp. 413-419
-
-
Yen, C.1
Yang, J.L.2
Baum, B.R.3
-
44
-
-
37849032744
-
Comparative genomics search for losses of long-established genes on the human lineage
-
doi:10.1371/journal.pcbi.0030247
-
Zhu, J., Sanborn, J.Z., Diekhans, M., Lowe, C.B., Pringle, T.H., and Haussler, D. 2007. Comparative genomics search for losses of long-established genes on the human lineage. PLOS Comput. Biol. 3(12): e247. doi:10.1371/journal.pcbi.0030247.
-
(2007)
PLOS Comput. Biol
, vol.3
, Issue.12
-
-
Zhu, J.1
Sanborn, J.Z.2
Diekhans, M.3
Lowe, C.B.4
Pringle, T.H.5
Haussler, D.6
|