Length variation in the nuclear ribosomal DNA internal transcribed spacer region of non-flowering seed plants

Systematic Botany

Volumn 21, Issue 2, 1996, Pages 109-120

  Liston, Aaron ^a   Robinson, William A ^a   Oliphant, James M ^a   Alvarez Buylla, Elena R ^b  

^a OREGON STATE UNIVERSITY   (United States)

^b UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

ARAUCARIACEAE; CEPHALOTAXACEAE; CONIFERALES; CONIFEROPHYTA; CUPRESSACEAE; CYCADALES; EPHEDRA; GINKGOALES; GNETALES; GNETUM; GYMNOSPERMAE; MAGNOLIOPHYTA; PINACEAE; PODOCARPACEAE; SCIADOPITYACEAE; SPERMATOPHYTA; TAXACEAE; WELWITSCHIA;

EID: 0030454390     PISSN: 03636445     EISSN: None     Source Type: Journal    
DOI: 10.2307/2419742     Document Type: Article

References (48)

1. ALBERT, V. A., A. BACKLUND, K. BREMER, M W. CHASE, J. R. MAMHART, B. D. MISHLER, and K. C NIXON. 1994. Functional constraints and rbcL evidence for land plant phylogeny. Annals of the Missouri Botanical Garden 81: 534-567.
2. ALTSCHUL, S. F., W. GISH, W MILLER, E. W. MYERS, and D. J. LIPMAN. 1990. Basic local alignment search tool. Journal of Molecular Biology 215: 403-410.
3. ARNHEIM, N., M. KRYSTAL, R. SCHMICKEL, G. WILSON, O. RYDER, and E. ZIMMER. 1980. Molecular evidence for genetic exchanges among nbosomal genes on nonhomologous chromosomes in man and apes Proceedings of the National Academy of Sciences, U.S.A. 77. 7323-7327.
4. BALDWIN, B. G., M. J. SANDERSON, J. M. PORTER, M. F. WOJCIECHOWSKI, C. S. CAMPBELL, and M. J. DONOGHUE. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277.
5. BOBOLA, M. S., D. E. SMITH, and A. S. KLEIN. 1992 Five major nuclear ribosomal repeats represent a large and variable fraction of the genomic DNA of Picea rubens and P. mariana Molecular Biology and Evolution 9 125-137.
6. BROWN, G. R., V. AMARASINGHE, G, KISS, and J. E. CARLSON. 1993. Preliminary karyotype and chromosomal localization of ribosomal DNA sites in white spruce using fluorescence in situ hybridization. Genome 36: 310-316.
7. BRUNSFELD, S. J., P. S. SOLTIS, D. E. SOLTIS, P. A. GADEK, C. J. QUINN, D. D. STRENGE, and T. A. RANKER. 1994. Phylogenetic relationships among the genera of Taxodiaceae and Cupressaceae: evidence from rbcL sequences. Systematic Botany 19: 253-262.
8. CHAW, S-M., H.-M SUNG, H. LONG, A. ZHARKIKH, and W.-H. LI. 1995. The phylogenetic position of the conifer genera Amentotaxus, Phyllodadus, and Nageia inferred from 18S rRNA sequences. Journal of Molecular Evolution 41: 224-230.
9. CULLIS, C. A., G. P. CREISSON, S. W. GORMAN, and R. D. TEASDALE. 1988. The 2SS, 18S and 5S ribosomal RNA genes from Pinus radiata D. Don. Pp. 34-40 in Molecular genetics of forest trees, eds. W. M. Cheliak and A. C. Yapa. Canada: Petawawa National Forestry Institute Report.
10. DONOGHUE, M. J. 1995. Phylogeny and phylogenetic taxonomy of Dipsacales American Journal of Botany 82(6 Supplement): 108.
11. DOYLE, J. A. 1995. Seed plant phylogeny and the relationships of the Gnetales. American Journal of Botany 82(6 Supplement): 11.
12. _, M. J. DONOGHUE, and E. A. ZIMMER 1994 Integration of morphological and ribosomal RNA data on the origin of angiosperms. Annals of the Missouri Botanical Garden 81: 419-450.
13. DOYLE, J. J. and J. L DOYLE 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
14. GADEK, P. A. and C. J. QUINN. 1993. An analysis of relationships within the Cupressaceae sensu stricto based on rbcL sequences. Annals of the Missouri Botanical Garden 80: 581-586.
15. GONZALEZ, I. L., C. CHAMBERS, J. L. GORSKI, D. STAMBOLIAN, R. D. SCHMICKEL, and J. E. SYLVESTER. 1990. Sequence and structure correlation of human ribosomal transcribed spacers. Journal of Molecular Biology 212: 27-35.
16. GOREMYKIN, V., V. BOBROVA, J. PAHNKE, A. TROITSKY, A. ANTONOV, and W. MARTIN. 1996. Noncoding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support Gnetalean affinities of angiosperms. Molecular Biology and Evolution 13: 383-396
17. HAMBY, R. K. and E. A ZIMMER. 1992. Ribosomal RNA as a phylogenetic tool in plant systematics. Pp 50-91 in Molecular systematics of plants, eds. P. S Soltis, D. E. Soltis, and J. J. Doyle. New York: Chapman and Hall.
18. HART, J. 1987. A cladistic analysis of conifers: preliminary results. Journal of the Arnold Arboretum 68: 269-307.
19. HAUSNER, G., G. R. KLASSEN, and J. REID. 1993 Unusually compact ribosomal RNA gene cluster in Sphaeronaemella fimicola. Current Genetics 23: 357-359.
20. HILLIS, D. M, C. MORITZ, C. A. PORTER, and R. J. BAKER. 1991. Evidence for biased gene conversion in concerted evolution of ribosomal DNA. Science 251: 308-310.
21. KANE, R. A. and D. ROLLINSON. 1994. Repetitive sequences in the ribosomal DNA internal transcribed spacer of Schistosoma haemotabium, Schistosoma intercalatum and Schistosoma mattheei. Molecular and Biochemical Parasitology 63: 153-156.
22. KARVONEM, P., M. KARJALAINEN, and O. SAVOLAINEN. 1993. Ribosomal RNA genes in Scots pine (Pinus sylvestris L.). chromosomal organization and structure Genetica 88: 59-68.
23. _ and O. SAVOLAINEN. 1993. Variation and inheritance of ribosomal DNA in Pinus sylvestris L. (Scots pine). Heredity 71 614-622.
24. KLEIN, A. S. and D. E. SMITH. 1996. Erratum: Phylogenetic inferences on the relationship of North American and European Picea species based on nuclear ribosomal 18S sequences and the internal transcribed spacer 1 region. Molecular Phylogenetics and Evolution 5: 286-287.
25. KRUPKIN, A. B., A. LISTON, and S. H. STRAUSS. 1996. Phylogenetic analysis of the hard pines (Pinus subgenus Pinus) from chloroplast DNA restriction site analysis. American Journal of Botany 83: 489-498.
26. LISTON, A. 1992. Variation in the chloroplast genes rpoC1 and rpoC2 of the genus Astragalus (Fabaceae): Evidence from restriction site mapping of a PCR-amplified fragment. American Journal of Botany 79: 953-961.
27. _ and E. R. ALVAREZ-BUYLLA. 1995. Internal transcribed spacer sequences of conifers "there is a fungus among us." Inoculum 46(3): 26.
28. LIU, J.-S and C L SCHARDL. 1994. A conserved sequence in internal transcribed spacer 1 of plant nuclear rRNA genes Plant Molecular Biology 26: 775-778.
29. MABBERLEY, D. J. 1993. The plant book. Cambridge, England: Cambridge Univ. Press.
30. MAGGINI, F., G TUCCI, A. DEMARTIS, M. T. GELATI, and S. AVANZI. 1992. Ribosomal RNA genes of Phaseolus coccineus: I. Plant Molecular Biology 18: 1073-1082.
31. _, R. MARROCCO, F. RUBERTI, M. RUFINI-CASTIGLIONE, and S. AVANZI. 1993. Ribosomal RNA genes of Phaseolus coccineus: 3 different amplification of replication units in the embryo suspensor. Cytobios 76. 139-150.
32. MARROCCO, R., M. T. GELATI, and F. MAGGINI. 1996. Nucleotide sequence of the internal transcribed spacers and 5.8S region of ribosomal DNA in Pinus pinea L. DNA Sequence: The Journal of DNA Sequencing and Mapping 6: 175-177.
33. NICKRENT, D. L, K P SCHUETTE, and E. M. STARR. 1994. A molecular phylogeny of Arceuthobium (Viscaceae) based on nuclear ribosomal DNA internal transcribed spacer sequences. American Journal of Botany 81: 1149-1160.
34. NIXON, K. C., W. L. CREPET, D. STEVENSON, and E. M. FRIIS. 1994. A reevaluation of seed plant phylogeny. Annals of the Missouri Botanical Garden 81: 484-533.
35. PAGE, C. N. 1990. Pinatae. Pp. 290-361 in The families and genera of vascular plants, ed. K. Kubitzki, vol. 1, Pteridophytes and gymnosperms, eds. K. U. Kramer and P. S. Green. Berlin: Springer-Verlag.
36. PRICE, R. A. 1995a. Familial and generic classification of the conifers. American Journal of Botany 82(6 Supplement): 110.
37. _. 1995b. Systematics and biogeography of Gnetales. American Journal of Botany 82(6 Supplement): 13.
38. QU, L.-H., B.-Q. XI, S.-H. SHI, and H.-D. ZHANG. 1993. A characteristic size of the ITS in gymnosperm rDNA. P. 201 in XV International Botanical Congress Abstracts Yokohama, Japan: International Union of Biological Sciences.
39. SMITH, D. E. and A. S. KLEIN. 1994. Phylogenetic inferences on the relationship of North American and European Picea species based on nuclear ribosomal 18S sequences and the internal transcribed spacer 1 region. Molecular Phylogenetics and Evolution 3: 17-26.
40. SOLTIS, P. S. and R. K. KUZOEF. 1993. ITS sequence variation within and among populations of Lomatium grayi and L. laevigatum. Molecular Phylogenetics and Evolution 2: 166-170.
41. SUH, Y., L. B. THIEN, H. E. REEVE, and E. A ZIMMER. 1993. Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winteraceae. American Journal of Botany 80: 1042-1055.
42. TSUMURA, Y., K. YOSHIMURA, N. TOMARU, and K. OHBA. 1995. Molecular phylogeny of conifers using RFLP analysis of PCR-amplified specific chloroplast genes. Theoretical and Applied Genetics 91: 1222-1236.
43. VAN KEULEN, H., S. R. CAMPBELL, S. L. ERLANDSEN, and E. L. JARROLL. 1991. Nucleotide sequence of the 5.8S and large subunit rRNA genes and the internal transcribed spacer and part of the external transcribed spacer from Giardia ardeae. Nucleic Acids Research 19: 6050.
44. VAN NUES, R. W., J. M. J. RIENTJES, C. A. F. M. VAN SANDE, S. F. ZERP, C. SLUITER, J. VENEMA, R. J. PLANTA, and H. A. RAUE. 1994. Separate structural elements within internal transcribed spacer 1 of Saccharomyces cerevisiae precursor ribosomal RNA direct the formation of 17S and 26S rRNA. Nucleic Acids Research 22: 912-919.
45. WATSON, F. D. and J. E. ECKENWALDER. 1993. Cupressaceae. Pp. 399-401 in Flora of North America, ed. Flora of North America Editorial Committee, vol. 2. New York: Oxford Univ. Press.
46. WELCH, H. J. 1991. The conifer manual, vol. 1. Dordrecht. Kluwer Academic.
47. WENDEL, J. F., A. SCHNABEL, and T. SEELANEN. 1995. Bi-directional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proceedings of the National Academy of Sciences, U.S.A. 92: 280-284.
48. WHITE, T. J., T. BRUNS, S. LEE, and J. TAYLOR. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp. 315-322 in PCR protocols: a guide to methods and applications, eds. M. Innis, D. Gelfand, J. Sninsky, and T. White. San Diego: Academic Press.