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Volumn 279, Issue 6, 2008, Pages 621-628

Molecular confirmation of the genomic constitution of Douglasdeweya (Triticeae: Poaceae): Demonstration of the utility of the 5S rDNA sequence as a tool for haplome identification

Author keywords

Genome constitution; Haplome; Non transcribed spacer; Unit class

Indexed keywords

DNA 5S;

EID: 44149095215     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-008-0338-1     Document Type: Article
Times cited : (20)

References (28)
  • 2
    • 0006831643 scopus 로고
    • The 5S DNA units of bread wheat (Triticum aestivum L.)
    • Appels R, Baum BR, Clarke BC (1992) The 5S DNA units of bread wheat (Triticum aestivum L.). Plant Syst Evol 183:183-194
    • (1992) Plant Syst Evol , vol.183 , pp. 183-194
    • Appels, R.1    Baum, B.R.2    Clarke, B.C.3
  • 3
    • 0002626601 scopus 로고
    • Evolutionary change in the 5S DNA loci of species in the Triticeae
    • Baum BR, Appels R (1992) Evolutionary change in the 5S DNA loci of species in the Triticeae. Plant Syst Evol 183:195-208
    • (1992) Plant Syst Evol , vol.183 , pp. 195-208
    • Baum, B.R.1    Appels, R.2
  • 4
    • 0034990236 scopus 로고    scopus 로고
    • The 5S rRNA gene sequence variation in wheats and some polyploid wheat progenitors (Poaceae: Triticeae)
    • Baum BR, Bailey LG (2001) The 5S rRNA gene sequence variation in wheats and some polyploid wheat progenitors (Poaceae: Triticeae). Genet Res Crop Evol 48:35-51
    • (2001) Genet Res Crop Evol , vol.48 , pp. 35-51
    • Baum, B.R.1    Bailey, L.G.2
  • 5
    • 0346463029 scopus 로고    scopus 로고
    • Molecular diversity of the 5S rDNA units in the Elymus dahuricus complex (Poaceae, Triticeae) supports the genomic constitution of St, Y, and H haplomes
    • Baum BR, Bailey LG, Johnson DA, Agafonov AV (2003) Molecular diversity of the 5S rDNA units in the Elymus dahuricus complex (Poaceae, Triticeae) supports the genomic constitution of St, Y, and H haplomes. Can J Bot 81:1091-1103
    • (2003) Can J Bot , vol.81 , pp. 1091-1103
    • Baum, B.R.1    Bailey, L.G.2    Johnson, D.A.3    Agafonov, A.V.4
  • 6
    • 0028676173 scopus 로고
    • The molecular diversity of the 5S rRNA gene in barley (Hordeum vulgare)
    • Baum BR, Johnson DA (1994) The molecular diversity of the 5S rRNA gene in barley (Hordeum vulgare). Genome 37:992-998
    • (1994) Genome , vol.37 , pp. 992-998
    • Baum, B.R.1    Johnson, D.A.2
  • 7
    • 0030087902 scopus 로고    scopus 로고
    • The 5S rRNA gene units in ancestral two-row barley (Hordeum spontaneum C. Koch) and bulbous barley (H. bulbosum L.): Sequence analysis and phylogenetic relationships with the 5S rDNA units in cultivated barley (H. vulgare L.)
    • Baum BR, Johnson DA (1996) The 5S rRNA gene units in ancestral two-row barley (Hordeum spontaneum C. Koch) and bulbous barley (H. bulbosum L.): sequence analysis and phylogenetic relationships with the 5S rDNA units in cultivated barley (H. vulgare L.). Genome 39:140-149
    • (1996) Genome , vol.39 , pp. 140-149
    • Baum, B.R.1    Johnson, D.A.2
  • 8
    • 0032193634 scopus 로고    scopus 로고
    • The 5S rRNA gene in sea barley (Hordeum marinum Hudson sensu lato): Sequence variation among repeat units and relationship to the X haplome in barley (Hordeum)
    • Baum BR, Johnson DA (1998) The 5S rRNA gene in sea barley (Hordeum marinum Hudson sensu lato): sequence variation among repeat units and relationship to the X haplome in barley (Hordeum). Genome 41:652-661
    • (1998) Genome , vol.41 , pp. 652-661
    • Baum, B.R.1    Johnson, D.A.2
  • 9
    • 34250024660 scopus 로고    scopus 로고
    • The 5S DNA sequences in Hordeum bogdanii and in the H. brevisubulatum complex, and the evolution and the geographical dispersal of the diploid Hordeum species (Triticeae: Poaceae)
    • Baum BR, Johnson DA (2007) The 5S DNA sequences in Hordeum bogdanii and in the H. brevisubulatum complex, and the evolution and the geographical dispersal of the diploid Hordeum species (Triticeae: Poaceae). Genome 50:1-14
    • (2007) Genome , vol.50 , pp. 1-14
    • Baum, B.R.1    Johnson, D.A.2
  • 10
    • 0036303420 scopus 로고    scopus 로고
    • Defining groups among multicopy genes prior to inferring phylogeny, with special emphasis on the Triticeae (Poaceae)
    • Baum BR, Johnson DA, Bailey LG (2001) Defining groups among multicopy genes prior to inferring phylogeny, with special emphasis on the Triticeae (Poaceae). Hereditas 135:123-138
    • (2001) Hereditas , vol.135 , pp. 123-138
    • Baum, B.R.1    Johnson, D.A.2    Bailey, L.G.3
  • 11
    • 26944501238 scopus 로고    scopus 로고
    • Ancient differentiation of the H and I haplomes in diploid Hordeum species based on the 5S rDNA
    • Baum BR, Johnson DA, Bailey LG (2005) Ancient differentiation of the H and I haplomes in diploid Hordeum species based on the 5S rDNA. Genome 48:610-618
    • (2005) Genome , vol.48 , pp. 610-618
    • Baum, B.R.1    Johnson, D.A.2    Bailey, L.G.3
  • 12
    • 33644557410 scopus 로고    scopus 로고
    • Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals
    • doi: 10.1186/1471-2148-6-5
    • Danchin EGJ, Gouret P, Pontarotti P (2006) Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals. BMC Evol Biol 6:5. doi: 10.1186/1471-2148-6-5
    • (2006) BMC Evol Biol , vol.6 , pp. 5
    • Danchin, E.G.J.1    Gouret, P.2    Pontarotti, P.3
  • 13
    • 84959743928 scopus 로고
    • Methods for computing Wagner trees
    • Farris JS (1970) Methods for computing Wagner trees. Syst Zool 19:83-92
    • (1970) Syst Zool , vol.19 , pp. 83-92
    • Farris, J.S.1
  • 14
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 15
    • 0020286044 scopus 로고
    • Branch and bound algorithms to determine minimal evolutionary trees
    • Hendy MD, Penny D (1982) Branch and bound algorithms to determine minimal evolutionary trees. Math Biosci 59:277-290
    • (1982) Math Biosci , vol.59 , pp. 277-290
    • Hendy, M.D.1    Penny, D.2
  • 16
    • 1542337086 scopus 로고
    • Cytology and morphology of Pseudoroegneria deweyi (Poaceae: Triticeae): a new species from the foot hills of the Caucasus Mountains (Russia)
    • Jensen KB, Hatch SL, Wipff JK (1992) Cytology and morphology of Pseudoroegneria deweyi (Poaceae: Triticeae): a new species from the foot hills of the Caucasus Mountains (Russia). Can J Bot 70:900-909
    • (1992) Can J Bot , vol.70 , pp. 900-909
    • Jensen, K.B.1    Hatch, S.L.2    Wipff, J.K.3
  • 17
    • 0036918868 scopus 로고    scopus 로고
    • The impact of polyploidy on grass genome evolution
    • Levy AA, Feldman M (2002) The impact of polyploidy on grass genome evolution. Plant Physiol 130:1587-1593
    • (2002) Plant Physiol , vol.130 , pp. 1587-1593
    • Levy, A.A.1    Feldman, M.2
  • 20
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comp Appl Biosci 12:357-358
    • (1996) Comp Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 21
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 22
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 24
    • 0027968068 scopus 로고
    • CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 25
    • 20444487201 scopus 로고
    • Genome analysis of the tetraploid Pseudoroegneria tauri
    • Wang RRC, Dewey DR, Hsiao C (1986) Genome analysis of the tetraploid Pseudoroegneria tauri. Crop Sci 26:723-727
    • (1986) Crop Sci , vol.26 , pp. 723-727
    • Wang, R.R.C.1    Dewey, D.R.2    Hsiao, C.3
  • 26
    • 0021943518 scopus 로고
    • Improved M13 phage cloning vectors and host strains: Nucleotide sequence of M13mp18 and pUC19 vectors
    • Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequence of M13mp18 and pUC19 vectors. Gene 33:103-119
    • (1985) Gene , vol.33 , pp. 103-119
    • Yanisch-Perron, C.1    Vieira, J.2    Messing, J.3
  • 27
    • 20444456356 scopus 로고    scopus 로고
    • Douglasdeweya: A new genus, with new species and a new combination (Triticeae: Poaceae)
    • Yen C, Yang JL, Baum BR (2005) Douglasdeweya: a new genus, with new species and a new combination (Triticeae: Poaceae). Can J Bot 83:413-419
    • (2005) Can J Bot , vol.83 , pp. 413-419
    • Yen, C.1    Yang, J.L.2    Baum, B.R.3
  • 28
    • 20144366003 scopus 로고    scopus 로고
    • The genomes of Oryza sativa: A history of duplications
    • (0266-0281 at Accessed January 2007)
    • Yu J, Wang J, Lin W, Li S, Li H et al (2005) The genomes of Oryza sativa: a history of duplications. PLoS Biol 3: e38 (0266-0281 at http://www. plosbiology.org. Accessed January 2007)
    • (2005) PLoS Biol , vol.3
    • Yu, J.1    Wang, J.2    Lin, W.3    Li, S.4    Li, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.