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Volumn 3, Issue 6, 2013, Pages 929-940

A nucleosomal region important for ensuring proper interactions between the transcriptionelongation factor Spt16 and transcribed genes in Saccharomyces cerevisiae

Author keywords

Histones; Nucleosomes; Spt16; Transcription elongation; yFACT

Indexed keywords

AMINO ACID; CHAPERONE; ELONGATION FACTOR; ELONGATION FACTOR SPT16; FACILITATES CHROMATIN TRANSACTIONS COMPLEX; HISTONE; HISTONE H3; HISTONE H4; MUTANT PROTEIN; RNA POLYMERASE II; SACCHAROMYCES CEREVISIAE PROTEIN; SPT16 PROTEIN, S CEREVISIAE; TRANSCRIPTION ELONGATION FACTOR; UNCLASSIFIED DRUG;

EID: 84883236023     PISSN: None     EISSN: 21601836     Source Type: Journal    
DOI: 10.1534/g3.113.005926     Document Type: Article
Times cited : (15)

References (41)
  • 1
    • 79951969175 scopus 로고    scopus 로고
    • Histone chaperones: modulators of chromatin marks
    • Avvakumov, N., A. Nourani, and J. Cote, 2011 Histone chaperones: modulators of chromatin marks. Mol. Cell 41: 502-514.
    • (2011) Mol. Cell , vol.41 , pp. 502-514
    • Avvakumov, N.1    Nourani, A.2    Cote, J.3
  • 3
    • 0032555659 scopus 로고    scopus 로고
    • Characterization of the CP complex, an abundant dimer of Cdc68 and Pob3 proteins that regulates yeast transcriptional activation and chromatin repression
    • Brewster, N. K., G. C. Johnston, and R. A. Singer, 1998 Characterization of the CP complex, an abundant dimer of Cdc68 and Pob3 proteins that regulates yeast transcriptional activation and chromatin repression. J. Biol. Chem. 273: 21972-21979.
    • (1998) J. Biol. Chem. , vol.273 , pp. 21972-21979
    • Brewster, N.K.1    Johnston, G.C.2    Singer, R.A.3
  • 4
    • 0035027953 scopus 로고    scopus 로고
    • A bipartite yeast SSRP1 analog comprised of Pob3 and Nhp6 proteins modulates transcription
    • Brewster, N. K., G. C. Johnston, and R. A. Singer, 2001 A bipartite yeast SSRP1 analog comprised of Pob3 and Nhp6 proteins modulates transcription. Mol. Cell. Biol. 21: 3491-3502.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 3491-3502
    • Brewster, N.K.1    Johnston, G.C.2    Singer, R.A.3
  • 5
    • 73349092441 scopus 로고    scopus 로고
    • Histones: annotating chromatin
    • Campos, E. I., and D. Reinberg, 2009 Histones: annotating chromatin. Annu. Rev. Genet. 43: 559-599.
    • (2009) Annu. Rev. Genet. , vol.43 , pp. 559-599
    • Campos, E.I.1    Reinberg, D.2
  • 6
    • 84876365300 scopus 로고    scopus 로고
    • Histone methyltransferase SETD2 coordinates FACT recruitment with nucleosome dynamics during transcription
    • Carvalho, S., A. C. Raposo, F. B. Martins, A. R. Grosso, S. C. Sridhara et al., 2013 Histone methyltransferase SETD2 coordinates FACT recruitment with nucleosome dynamics during transcription. Nucleic Acids Res. 41: 2881-2893.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 2881-2893
    • Carvalho, S.1    Raposo, A.C.2    Martins, F.B.3    Grosso, A.R.4    Sridhara, S.C.5
  • 7
    • 56849114880 scopus 로고    scopus 로고
    • Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome
    • Cheung, V., G. Chua, N. N. Batada, C. R. Landry, S. W. Michnick et al., 2008 Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome. PLoS Biol. 6: e277.
    • (2008) PLoS Biol. , vol.6
    • Cheung, V.1    Chua, G.2    Batada, N.3    Landry, C.R.4    Michnick, S.W.5
  • 8
    • 51549087123 scopus 로고    scopus 로고
    • Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants
    • Dai, J., E. M. Hyland, D. S. Yuan, H. Huang, J. S. Bader et al., 2008 Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants. Cell 134: 1066-1078.
    • (2008) Cell , vol.134 , pp. 1066-1078
    • Dai, J.1    Hyland, E.M.2    Yuan, D.S.3    Huang, H.4    Bader, J.S.5
  • 9
    • 84872381240 scopus 로고    scopus 로고
    • Histone chaperones Spt6 and FACT: similarities and differences in modes of action at transcribed genes
    • Article, ID 625201
    • Duina, A. A., 2011 Histone chaperones Spt6 and FACT: similarities and differences in modes of action at transcribed genes. Genet. Res. Int. 134: Article, ID 625201.
    • (2011) Genet. Res. Int. , vol.134
    • Duina, A.A.1
  • 10
    • 0346095323 scopus 로고    scopus 로고
    • Analysis of a mutant histone H3 that perturbs the association of Swi/Snf with chromatin
    • Duina, A. A., and F. Winston, 2004 Analysis of a mutant histone H3 that perturbs the association of Swi/Snf with chromatin. Mol. Cell. Biol. 24: 561-572.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 561-572
    • Duina, A.A.1    Winston, F.2
  • 11
    • 35048814992 scopus 로고    scopus 로고
    • Evidence that the localization of the elongation factor Spt16 across transcribed genes is dependent upon histone H3 integrity in Saccharomyces cerevisiae
    • Duina, A. A., A. Rufiange, J. Bracey, J. Hall, A. Nourani et al., 2007 Evidence that the localization of the elongation factor Spt16 across transcribed genes is dependent upon histone H3 integrity in Saccharomyces cerevisiae. Genetics 177: 101-112.
    • (2007) Genetics , vol.177 , pp. 101-112
    • Duina, A.A.1    Rufiange, A.2    Bracey, J.3    Hall, J.4    Nourani, A.5
  • 12
    • 58149348588 scopus 로고    scopus 로고
    • FACT and the reorganized nucleosome
    • Formosa, T., 2008 FACT and the reorganized nucleosome. Mol. Biosyst. 4: 1085-1093. Formosa, T., 2012 The role of FACT in making and breaking nucleosomes. Biochim. Biophys. Acta 1819: 247-255.
    • (2008) Mol. Biosyst. , vol.4 , pp. 1085-1093
    • Formosa, T.1
  • 13
    • 84857119549 scopus 로고    scopus 로고
    • The role of FACT in making and breaking nucleosomes
    • Formosa, T., 2012 The role of FACT in making and breaking nucleosomes. Biochim. Biophys. Acta 1819: 247-255.
    • (2012) Biochim. Biophys. Acta , vol.1819 , pp. 247-255
    • Formosa, T.1
  • 14
    • 0035796454 scopus 로고    scopus 로고
    • Spt16- Pob3 and the HMG protein Nhp6 combine to form the nucleosomebinding factor SPN
    • Formosa, T., P. Eriksson, J. Wittmeyer, J. Ginn, Y. Yu et al., 2001 Spt16- Pob3 and the HMG protein Nhp6 combine to form the nucleosomebinding factor SPN. EMBO J. 20: 3506-3517.
    • (2001) EMBO J. , vol.20 , pp. 3506-3517
    • Formosa, T.1    Eriksson, P.2    Wittmeyer, J.3    Ginn, J.4    Yu, Y.5
  • 15
    • 0036964090 scopus 로고    scopus 로고
    • Defects in SPT16 or POB3 (yFACT) in Saccharomyces cerevisiae cause dependence on the Hir/Hpc pathway: polymerase passage may degrade chromatin structure
    • Formosa, T., S. Ruone, M. D. Adams, A. E. Olsen, P. Eriksson et al., 2002 Defects in SPT16 or POB3 (yFACT) in Saccharomyces cerevisiae cause dependence on the Hir/Hpc pathway: polymerase passage may degrade chromatin structure. Genetics 162: 1557-1571.
    • (2002) Genetics , vol.162 , pp. 1557-1571
    • Formosa, T.1    Ruone, S.2    Adams, M.D.3    Olsen, A.E.4    Eriksson, P.5
  • 16
    • 80052330728 scopus 로고    scopus 로고
    • Identification of histone mutants that are defective for transcription-coupled nucleosome occupancy
    • Hainer, S. J., and J. A. Martens, 2011 Identification of histone mutants that are defective for transcription-coupled nucleosome occupancy. Mol. Cell. Biol. 31: 3557-3568.
    • (2011) Mol. Cell. Biol. , vol.31 , pp. 3557-3568
    • Hainer, S.J.1    Martens, J.A.2
  • 17
    • 63849216727 scopus 로고    scopus 로고
    • HistoneHits: a database for histone mutations and their phenotypes
    • Huang, H., A. M. Maertens, E. M. Hyland, J. Dai, A. Norris et al., 2009 HistoneHits: a database for histone mutations and their phenotypes. Genome Res. 19: 674-681.
    • (2009) Genome Res. , vol.19 , pp. 674-681
    • Huang, H.1    Maertens, A.M.2    Hyland, E.M.3    Dai, J.4    Norris, A.5
  • 18
    • 68349148027 scopus 로고    scopus 로고
    • Histone chaperone spt16 promotes redeposition of the original h3-h4 histones evicted by elongating RNA polymerase
    • Jamai, A., A. Puglisi, and M. Strubin, 2009 Histone chaperone spt16 promotes redeposition of the original h3-h4 histones evicted by elongating RNA polymerase. Mol. Cell 35: 377-383.
    • (2009) Mol. Cell , vol.35 , pp. 377-383
    • Jamai, A.1    Puglisi, A.2    Strubin, M.3
  • 19
    • 0041828953 scopus 로고    scopus 로고
    • Transcription elongation factors repress transcription initiation from cryptic sites
    • Kaplan, C. D., L. Laprade, and F. Winston, 2003 Transcription elongation factors repress transcription initiation from cryptic sites. Science 301: 1096-1099.
    • (2003) Science , vol.301 , pp. 1096-1099
    • Kaplan, C.D.1    Laprade, L.2    Winston, F.3
  • 20
    • 1542290655 scopus 로고    scopus 로고
    • Transitions in RNA polymerase II elongation complexes at the 39 ends of genes
    • Kim, M., S. H. Ahn, N. J. Krogan, J. F. Greenblatt, and S. Buratowski, 2004 Transitions in RNA polymerase II elongation complexes at the 39 ends of genes. EMBO J. 23: 354-364.
    • (2004) EMBO J. , vol.23 , pp. 354-364
    • Kim, M.1    Ahn, S.H.2    Krogan, N.J.3    Greenblatt, J.F.4    Buratowski, S.5
  • 21
    • 59249089587 scopus 로고    scopus 로고
    • Uncoupling of the patterns of chromatin association of different transcription elongation factors by a histone H3 mutant in Saccharomyces cerevisiae
    • Lloyd, A., K. Pratt, E. Siebrasse, M. D. Moran, and A. A. Duina, 2009 Uncoupling of the patterns of chromatin association of different transcription elongation factors by a histone H3 mutant in Saccharomyces cerevisiae. Eukaryot. Cell 8: 257-260.
    • (2009) Eukaryot. Cell , vol.8 , pp. 257-260
    • Lloyd, A.1    Pratt, K.2    Siebrasse, E.3    Moran, M.D.4    Duina, A.A.5
  • 24
    • 0242579933 scopus 로고    scopus 로고
    • The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo
    • Mason, P. B., and K. Struhl, 2003 The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo. Mol. Cell. Biol. 23: 8323-8333.
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 8323-8333
    • Mason, P.B.1    Struhl, K.2
  • 25
  • 27
    • 0033566129 scopus 로고    scopus 로고
    • The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins
    • Orphanides, G., W. H. Wu, W. S. Lane, M. Hampsey, and D. Reinberg, 1999 The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins. Nature 400: 284-288. Petesch, S. J., and J. T. Lis, 2012 Overcoming the nucleosome barrier during transcript elongation. Trends Genet. 28: 285-294.
    • (1999) Nature , vol.400 , pp. 284-288
    • Orphanides, G.1    Wu, W.H.2    Lane, W.S.3    Hampsey, M.4    Reinberg, D.5
  • 28
    • 84861531483 scopus 로고    scopus 로고
    • Overcoming the nucleosome barrier during transcript elongation
    • Petesch, S. J., and J. T. Lis, 2012 Overcoming the nucleosome barrier during transcript elongation. Trends Genet. 28: 285-294.
    • (2012) Trends Genet. , vol.28 , pp. 285-294
    • Petesch, S.J.1    Lis, J.T.2
  • 29
    • 84857427738 scopus 로고    scopus 로고
    • Chromatin and transcription in yeast
    • Rando, O. J., and F. Winston, 2012 Chromatin and transcription in yeast. Genetics 190: 351-387.
    • (2012) Genetics , vol.190 , pp. 351-387
    • Rando, O.J.1    Winston, F.2
  • 30
    • 0003529272 scopus 로고
    • Methods in Yeast Genetics: A Laboratory Course Manual
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • Rose, M. D., F. Winston, and P. Hieter, 1990 Methods in Yeast Genetics: A Laboratory Course Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1990)
    • Rose, M.D.1    Winston, F.2    Hieter, P.3
  • 31
    • 0242413271 scopus 로고    scopus 로고
    • Multiple Nhp6 molecules are required to recruit Spt16-Pob3 to form yFACT complexes and to reorganize nucleosomes
    • Ruone, S., A. R. Rhoades, and T. Formosa, 2003 Multiple Nhp6 molecules are required to recruit Spt16-Pob3 to form yFACT complexes and to reorganize nucleosomes. J. Biol. Chem. 278: 45288-45295.
    • (2003) J. Biol. Chem. , vol.278 , pp. 45288-45295
    • Ruone, S.1    Rhoades, A.R.2    Formosa, T.3
  • 32
    • 8644287437 scopus 로고    scopus 로고
    • Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II
    • Schwabish, M. A., and K. Struhl, 2004 Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II. Mol. Cell. Biol. 24: 10111-10117.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 10111-10117
    • Schwabish, M.A.1    Struhl, K.2
  • 35
    • 41949125350 scopus 로고    scopus 로고
    • Structural and functional analysis of the Spt16p N-terminal domain reveals overlapping roles of yFACT subunits
    • VanDemark, A. P., H. Xin, L. McCullough, R. Rawlins, S. Bentley et al., 2008 Structural and functional analysis of the Spt16p N-terminal domain reveals overlapping roles of yFACT subunits. J. Biol. Chem. 283: 5058-5068.
    • (2008) J. Biol. Chem. , vol.283 , pp. 5058-5068
    • VanDemark, A.P.1    Xin, H.2    McCullough, L.3    Rawlins, R.4    Bentley, S.5
  • 36
    • 0035903534 scopus 로고    scopus 로고
    • Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions
    • White, C. L., R. K. Suto, and K. Luger, 2001 Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions. EMBO J. 20: 5207-5218.
    • (2001) EMBO J. , vol.20 , pp. 5207-5218
    • White, C.L.1    Suto, R.K.2    Luger, K.3
  • 37
    • 79955844395 scopus 로고    scopus 로고
    • The histone chaperone FACT: structural insights and mechanisms for nucleosome reorganization
    • Winkler, D. D., and K. Luger, 2011 The histone chaperone FACT: structural insights and mechanisms for nucleosome reorganization. J. Biol. Chem. 286: 18369-18374.
    • (2011) J. Biol. Chem. , vol.286 , pp. 18369-18374
    • Winkler, D.D.1    Luger, K.2
  • 38
    • 82355184456 scopus 로고    scopus 로고
    • Histone chaperone FACT coordinates nucleosome interaction through multiple synergistic binding events
    • Winkler, D. D., U. M. Muthurajan, A. R. Hieb, and K. Luger, 2011 Histone chaperone FACT coordinates nucleosome interaction through multiple synergistic binding events. J. Biol. Chem. 286: 41883-41892.
    • (2011) J. Biol. Chem. , vol.286 , pp. 41883-41892
    • Winkler, D.D.1    Muthurajan, U.M.2    Hieb, A.R.3    Luger, K.4
  • 39
    • 0000112508 scopus 로고
    • Analysis of SPT genes: a genetic approach toward analysis of TFIID
    • histones, and other transcription factors in yeast, in Transcription Regulation, edited by S. L. McKnight, and K. R. Yamamoto. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • Winston, F., 1992 Analysis of SPT genes: a genetic approach toward analysis of TFIID, histones, and other transcription factors in yeast, pp. 1271-1293 in Transcription Regulation, edited by S. L. McKnight, and K. R. Yamamoto. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1992) , pp. 1271-1293
    • Winston, F.1
  • 40
    • 0028794516 scopus 로고
    • Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C
    • Winston, F., C. Dollard, and S. L. Ricupero-Hovasse, 1995 Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C. Yeast 11: 53-55.
    • (1995) Yeast , vol.11 , pp. 53-55
    • Winston, F.1    Dollard, C.2    Ricupero-Hovasse, S.L.3
  • 41
    • 68349131435 scopus 로고    scopus 로고
    • yFACT induces global accessibility of nucleosomal DNA without H2A-H2B displacement
    • Xin, H., S. Takahata, M. Blanksma, L. McCullough, D. J. Stillman et al., 2009 yFACT induces global accessibility of nucleosomal DNA without H2A-H2B displacement. Mol. Cell 35: 365-376.
    • (2009) Mol. Cell , vol.35 , pp. 365-376
    • Xin, H.1    Takahata, S.2    Blanksma, M.3    McCullough, L.4    Stillman, D.J.5


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