Infrared spectroscopy for characterization of biomolecular interfaces

Biointerface Characterization by Advanced IR Spectroscopy

Volumn , Issue , 2011, Pages 57-82

  Hamers, Robert J ^a   Wang, Xiaoyu ^a   Franking, Ryan ^a   Ruther, Rose ^a   Stavis, Courtney ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84882889544     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-0-444-53558-0.00003-5     Document Type: Chapter

References (52)

1. Surewicz W.K., Mantsch H.H., Chapman D. Determination of protein secondary structure by Fourier-transform infrared-spectroscopy - a critical-assessment. Biochemistry 1993, 32(2):389-394.
2. Marsh D., Muller M., Schmitt F.J. Orientation of the infrared transition moments for an alpha-helix. Biophys. J. 2000, 78(5):2499-2510.
3. Kim J., Somorjai G.A. Molecular packing of lysozyme, fibrinogen, and bovine serum albumin on hydrophilic and hydrophobic surfaces studied by infrared-visible sum frequency generation and fluorescence microscopy. J. Am. Chem. Soc. 2003, 125(10):3150-3158.
4. Roach P., Farrar D., Perry C.C. Surface tailoring for controlled protein adsorption: effect of topography at the nanometer scale and chemistry. J. Am. Chem. Soc. 2006, 128(12):3939-3945.
5. Chittur K.K. FTIR/ATR for protein adsorption to biomaterial surfaces. Biomaterials 1998, 19(4-5):357-369.
6. Branch D.W., Wheeler B.C., Brewer G.J., Leckband D.E. Long-term stability of grafted polyethylene glycol surfaces for use with microstamped substrates in neuronal cell culture. Biomaterials 2001, 22(10):1035-1047.
7. Steiner G., Tunc S., Maitz M., Salzer R. Conformational changes during protein adsorption. FT-IR spectroscopic imaging of adsorbed fibrinogen layers. Anal. Chem. 2007, 79(4):1311-1316.
8. Alcantar N.A., Aydil E.S., Israelachvili J.N. Polyethylene glycol-coated biocompatible surfaces. J. Biomed. Mater. Res. 2000, 51(3):343-351.
9. Remes Z., Kromka A., Kozak H., Vanecek M., Haenen K., Wenmackers S. The infrared optical absorption spectra of the functionalized nanocrystalline diamond surface. Diam. Relat. Mat. 2009, 18(5-8):772-775.
10. Chabal Y.J. Surface infrared-spectroscopy. Surf. Sci. Rep. 1988, 8(5-7):211-357.
11. Soderquist M.E., Walton A.G. Structural-changes in proteins adsorbed on polymer surfaces. J. Colloid Interface Sci. 1980, 75(2):386-397.
12. Lu D.R., Park K. Effect of surface hydrophobicity on the conformational-changes of adsorbed fibrinogen. J. Colloid Interface Sci. 1991, 144(1):271-281.
13. Tolstoy V.P., Chernyshova I.V., Skryshevsky V.A. Handbook of Infrared Spectroscopy of Ultrathin Films 2003, John Wiley and Sons, Inc, Hoboken, NJ.
14. Roach P., Farrar D., Perry C.C. Interpretation of protein adsorption: surface-induced conformational changes. J. Am. Chem. Soc. 2005, 127(22):8168-8173.
15. Onodera K., Hirano-Iwata A., Miyamoto K.I., Kimura Y., Kataoka M., Shinohara Y., Niwano M. Label-free detection of protein-protein interactions at the gas/water interface through surface infrared spectroscopy: discrimination between specific and nonspecific interactions by using secondary structure analysis. Langmuir 2007, 23(24):12287-12292.
16. Terrettaz S., Ulrich W.P., Vogel H., Hong Q., Dover L.G., Lakey J.H. Stable self-assembly of a protein engineering scaffold on gold surfaces. Protein Sci. 2002, 11(8):1917-1925.
17. Brunner H., Mayer U., Hoffmann H. External reflection infrared spectroscopy of anisotropic adsorbate layers on dielectric substrates. Appl. Spectrosc. 1997, 51(2):209-217.
18. Griffiths P.R., de Haseth J.A. Fourier Transform Infrared Spectrometry 2007, John Wiley, Hoboken, NJ.
19. Surewicz W.K., Mantsch H.H. New insight into protein secondary structure from resolution-enhanced infrared-spectra. Biochimica Et Biophysica Acta 1988, 952(2):115-130.
20. Surewicz W.K., Olesen P.R. On the thermal-stability of alpha-crystallin-a new insight from infrared-spectroscopy. Biochemistry 1995, 34(30):9655-9660.
21. Yang W.J., Griffiths P.R., Byler D.M., Susi H. Protein conformation by infrared-spectroscopy- resolution enhancement by Fourier self-deconvolution. Appl. Spectrosc. 1985, 39(2):282-287.
22. Susi H., Byler D.M. Protein-structure by Fourier-transform infrared-spectroscopy-2nd derivative spectra. Biochem. Biophys. Res. Commun. 1983, 115(1):391-397.
23. Byler D.M., Susi H. Examination of the secondary structure of proteins by deconvolved FTIR spectra. Biopolymers 1986, 25(3):469-487.
24. Susi H., Byler D.M. Fourier deconvolution of the amide I Raman band of proteins as related to conformation. Appl. Spectrosc. 1988, 42(5):819-826.
25. Dong A., Huang P., Caughey W.S. Protein secondary structures in water from 2nd-derivative amide I infrared spectra. Biochemistry 1990, 29(13):3303-3308.
26. Schwinte P., Voegel J.C., Picart C., Haikel Y., Schaaf P., Szalontai B. Stabilizing effects of various polyelectrolyte multilayer films on the structure of adsorbed/embedded fibrinogen molecules: an ATR-FTIR study. J. Phys. Chem. B 2001, 105(47):11906-11916.
27. Tunc S., Maitz M.F., Steiner G., Vazquez L., Pham M.T., Salzer R. In situ conformational analysis of fibrinogen adsorbed on Si surfaces. Colloids Surf B Biointerfaces 2005, 42(3-4):219-225.
28. Yamamoto K., Masui A., Ishida H. Kramers-Kronig analysis of infrared reflection spectra with perpendicular polarization. Appl. Opt. 1994, 33(27):6285-6293.
29. Allara D.L., Baca A., Pryde C.A. Distortions of band shapes in external reflection infrared spectra of thin polymer films on metal substrates. Macromolecules 1978, 11:1215-1220.
30. Hansen W.N. Electric fields produced by propagation of plane coherent electromagnetic radiation in a stratified medium. J. Opt. Soc. Am. 1968, 58(3):380-388.
31. Strother T., Cai W., Zhao X.S., Hamers R.J., Smith L.M. Synthesis and characterization of DNA-modified silicon (111) surfaces. J. Am. Chem. Soc 2000, 122(6):1205-1209.
32. Stewart M.P., Buriak J.M. Photopatterned hydrosilylation on porous silicon. Angew. Chem. -Int. Edit. 1998, 37(23):3257-3260.
33. Linford M.R., Chidsey C.E.D. Alkyl monolayers covalently bonded to silicon surfaces. J. Am. Chem. Soc. 1993, 115(26):12631-12632.
34. Cicero R.L., Linford M.R., Chidsey C.E.D. Photoreactivity of unsaturated compounds with hydrogen-terminated silicon(111). Langmuir 2000, 16(13):5688-5695.
35. Wang X.Y., Ruther R.E., Streifer J.A., Hamers R.J. UV-induced grafting of alkenes to silicon surfaces: photoemission versus excitons. J. Am. Chem. Soc. 2010, 132(12):4048.
36. Yang W.S., Auciello O., Butler J.E., Cai W., Carlisle J.A., Gerbi J.E., Gruen D.M., Knickerbocker T., Lasseter T.L., Russell J.N., Smith L.M., Hamers R.J. DNA-modified nanocrystalline diamond thin-films as stable, biologically active substrates. Nat. Mater. 2002, 1(4):253-257.
37. Yang W.S., Butler J.E., Russell J.N., Hamers R.J. Direct electrical detection of antigen-antibody binding on diamond and silicon substrates using electrical impedance spectroscopy. Analyst 2007, 132(4):296-306.
38. Cai W., Peck J.R., van der Weide D.W., Hamers R.J. Direct electrical detection of hybridization at DNA-modified silicon surfaces. Biosens. Bioelectron. 2004, 19(9):1013-1019.
39. Jackson M., Mantsch H.H. The use and misuse of FTIR spectroscopy in the determination of protein-structure. Crit. Rev. Biochem. Molec. Biol. 1995, 30(2):95-120.
40. Liedberg B., Ivarsson B., Lundstrom I. Fourier-transform infrared reflection absorption-spectroscopy (FT-IRAS) of fibrinogen adsorbed on metal and metal-oxide surfaces. J. Biochem. Biophys. Methods 1984, 9(3):233-243.
41. Dumas P., Chabal Y.J., Jakob P. Morphology of hydrogen-terminated Si(1 1 1) and Si(1 0 0) sufaces upon etching in HF and buffered-HF solutions. Surf. Sci. 1992, 269:867.
42. Chabal Y.J. Infrared spectroscopy of semiconductor sufaces: H-terminated silicon surfaces. J. Mol. Struct. 1993, 292:65.
43. Jakov P., Chabal Y.J. Chemical etching of vicinal si(111): dependence of the surface structure and the hydrogen termination on the pH of the etching solutions. J. Chem. Phys. 1991, 95(4):2897.
44. Garcia S.P., Bao H., Hines M.A. Understanding the ph dependence of silicon etching: the importance of dissolved oxygen in buffered HF etchants. Surf. Sci. 2003, 541:252.
45. Lu M.C., Knickerbocker T., Cai W., Yang W.S., Hamers R.J., Smith L.M. Invasive cleavage reactions on DNA-modified diamond surfaces. Biopolymers 2004, 73(5):606-613.
46. Stavis C., Clare T.L., Butler J.E., Radadia A.D., Carr R., Zeng H., King W.P., Carlisle J.A., Aksimentiev A., Bashir R., Hamers R.J. Surface functionalization of thin-film diamond for highly stable and selective biological interfaces. Proc. Natl. Acad. Sci. 2010.
47. Lasseter T.L., Clare B.H., Abbott N.L., Hamers R.J. Covalently modified silicon and diamond surfaces: resistance to nonspecific protein adsorption and optimization for biosensing. J. Am. Chem. Soc. 2004, 126(33):10220-10221.
48. Clare T.L., Clare B.H., Nichols B.M., Abbott N.L., Hamers R.J. Functional monolayers for improved resistance to protein adsorption: oligo(ethylene glycol)-modified silicon and diamond surfaces. Langmuir 2005, 21(14):6344-6355.
49. Hamers, R. J.; Stavis, C.; Pokhrel, A.; Franking, R.; Ruther, R. E.; Wang, X.; Cooperrider, M. C.; Zheng, H.; Carlisle, J. A.; Butler, J. E. Characterization of molecular and biomolecular layers on diamond thin films by infrared reflection-absorption spectroscopy. Diam. Relat. Mater., accepted, in press.
50. Cheng S.S., Chittur K.K., Sukenik C.N., Culp L.A., Lewandowska K. The conformation of fibronectin on self-assembled monolayers with different surface-composition - an FTIR/ATR study. J. Colloid Interface Sci. 1994, 162(1):135-143.
51. Iimura K., Nakajima Y., Kato T. A study on structures and formation mechanisms of self-assembled monolayers of n-alkyltrichlorosilanes using infrared spectroscopy and atomic force microscopy. Thin Solid Films 2000, 379(1-2):230-239.
52. Sun B., Colavita P.E., Kim H., Lockett M., Marcus M.S., Smith L.M., Hamers R.J. Covalent photochemical functionalization of amorphous carbon thin films for integrated real-time biosensing. Langmuir 2006, 22(23):9598-9605.