-
1
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
1000 Genomes Project Consortium
-
1000 Genomes Project Consortium. 2010. A map of human genome variation from population-scale sequencing. Nature 467:1061-1073.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
2
-
-
77951640946
-
A method and server for predicting damaging missense mutations
-
Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev SR. 2010. A method and server for predicting damaging missense mutations. Nat Methods. 7:248-249.
-
(2010)
Nat Methods.
, vol.7
, pp. 248-249
-
-
Adzhubei, I.A.1
Schmidt, S.2
Peshkin, L.3
Ramensky, V.E.4
Gerasimova, A.5
Bork, P.6
Kondrashov, A.S.7
Sunyaev, S.R.8
-
3
-
-
35748951614
-
Direct selection of human genomic loci by microarray hybridization
-
Albert TJ, Molla MN, Muzny DM, Nazareth L, Wheeler D, Song X, Richmond TA, Middle CM, Rodesch MJ, Packard CJ, Weinstock GM, Gibbs RA. 2007. Direct selection of human genomic loci by microarray hybridization. Nat Methods 4:903-905.
-
(2007)
Nat Methods
, vol.4
, pp. 903-905
-
-
Albert, T.J.1
Molla, M.N.2
Muzny, D.M.3
Nazareth, L.4
Wheeler, D.5
Song, X.6
Richmond, T.A.7
Middle, C.M.8
Rodesch, M.J.9
Packard, C.J.10
Weinstock, G.M.11
Gibbs, R.A.12
-
4
-
-
84861581164
-
Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer
-
Barbieri CE, Baca SC, Lawrence MS, Demichelis F, Blattner M, Theurillat JP, White TA, Stojanov P, Van Allen E, Stransky N, Nickerson E, Chae SS, et al. 2012. Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer. Nat Genet 44:685-689.
-
(2012)
Nat Genet
, vol.44
, pp. 685-689
-
-
Barbieri, C.E.1
Baca, S.C.2
Lawrence, M.S.3
Demichelis, F.4
Blattner, M.5
Theurillat, J.P.6
White, T.A.7
Stojanov, P.8
Van Allen, E.9
Stransky, N.10
Nickerson, E.11
Chae, S.S.12
-
5
-
-
79951497419
-
The genomic complexity of primary human prostate cancer
-
Berger M, Lawrence M, Demichelis F, Drier Y, Cibulskis K, Sivachenko A, Sboner A, Esgueva R, Pflueger D, Sougnez C, Onofrio R, Carter SL, et al. 2011. The genomic complexity of primary human prostate cancer. Nature 470:214-220.
-
(2011)
Nature
, vol.470
, pp. 214-220
-
-
Berger, M.1
Lawrence, M.2
Demichelis, F.3
Drier, Y.4
Cibulskis, K.5
Sivachenko, A.6
Sboner, A.7
Esgueva, R.8
Pflueger, D.9
Sougnez, C.10
Onofrio, R.11
Carter, S.L.12
-
6
-
-
0034697973
-
BRCA1 is associated with a human SWI/SNF-related complex: linking chromatin remodeling to breast cancer
-
Bochar D, Wang L, Beniya H, Kinev A, Xue Y, Lane W, Wang W, Kashanchi F, Shiekhattar R. 2000. BRCA1 is associated with a human SWI/SNF-related complex: linking chromatin remodeling to breast cancer. Cell 102:257-265.
-
(2000)
Cell
, vol.102
, pp. 257-265
-
-
Bochar, D.1
Wang, L.2
Beniya, H.3
Kinev, A.4
Xue, Y.5
Lane, W.6
Wang, W.7
Kashanchi, F.8
Shiekhattar, R.9
-
7
-
-
77954679271
-
Androgens induce functional CXCR4 through ERG factor expression in TMPRSS2-ERG fusion-positive prostate cancer cells
-
Cai J, Kandagatla P, Singareddy R, Kropinski A, Sheng S, Cher M, Chinni S. 2010. Androgens induce functional CXCR4 through ERG factor expression in TMPRSS2-ERG fusion-positive prostate cancer cells. Transl Oncol 3:195-203.
-
(2010)
Transl Oncol
, vol.3
, pp. 195-203
-
-
Cai, J.1
Kandagatla, P.2
Singareddy, R.3
Kropinski, A.4
Sheng, S.5
Cher, M.6
Chinni, S.7
-
8
-
-
69249115697
-
Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations
-
Carter H, Chen S, Isik L, Tyekucheva S, Velculescu VE, Kinzler KW, Vogelstein B, Karchin R. 2009. Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations. Cancer Res 69:6660-6667.
-
(2009)
Cancer Res
, vol.69
, pp. 6660-6667
-
-
Carter, H.1
Chen, S.2
Isik, L.3
Tyekucheva, S.4
Velculescu, V.E.5
Kinzler, K.W.6
Vogelstein, B.7
Karchin, R.8
-
9
-
-
77952093047
-
Structural insights into selective histone H3 recognition by the human Polybromo bromodomain 2
-
Charlop-Powers Z, Zeng L, Zhang Q, Zhou MM. 2010. Structural insights into selective histone H3 recognition by the human Polybromo bromodomain 2. Cell Res 20:529-538.
-
(2010)
Cell Res
, vol.20
, pp. 529-538
-
-
Charlop-Powers, Z.1
Zeng, L.2
Zhang, Q.3
Zhou, M.M.4
-
10
-
-
84872953223
-
TET2 promotes histone O-GlcNAcylation during gene transcription
-
Chen Q, Chen Y, Bian C, Fujiki R, Yu X. 2012. TET2 promotes histone O-GlcNAcylation during gene transcription. Nature 493:561-564.
-
(2012)
Nature
, vol.493
, pp. 561-564
-
-
Chen, Q.1
Chen, Y.2
Bian, C.3
Fujiki, R.4
Yu, X.5
-
11
-
-
77950678085
-
Coordinated chromatin control: structural and functional linkage of DNA and histone methylation
-
Cheng X, Blumenthal R. 2010. Coordinated chromatin control: structural and functional linkage of DNA and histone methylation. Biochemistry 49:2999-3008.
-
(2010)
Biochemistry
, vol.49
, pp. 2999-3008
-
-
Cheng, X.1
Blumenthal, R.2
-
12
-
-
66249137734
-
Mutation in TET2 in myeloid cancers
-
Delhommeau F, Dupont S, Della VV, James C, Trannoy S, Masse A, Kosmider O, Le Couedic JP, Robert F, Alberdi A, Lécluse Y, Plo I, et al. 2009. Mutation in TET2 in myeloid cancers. New Engl J Med 360:2289-2301.
-
(2009)
New Engl J Med
, vol.360
, pp. 2289-2301
-
-
Delhommeau, F.1
Dupont, S.2
Della, V.V.3
James, C.4
Trannoy, S.5
Masse, A.6
Kosmider, O.7
Le Couedic, J.P.8
Robert, F.9
Alberdi, A.10
Lécluse, Y.11
Plo, I.12
-
13
-
-
0032894615
-
Inferring tree models for oncogenesis from comparative genome hybridization data
-
Desper R, Jiang F, Kallioniemi OP, Moch H, Papadimitriou CH, Schaffer AA. 1999. Inferring tree models for oncogenesis from comparative genome hybridization data. J Comput Biol 6:37-51.
-
(1999)
J Comput Biol
, vol.6
, pp. 37-51
-
-
Desper, R.1
Jiang, F.2
Kallioniemi, O.P.3
Moch, H.4
Papadimitriou, C.H.5
Schaffer, A.A.6
-
14
-
-
70349545839
-
Identification of seven new prostate cancer susceptibility loci through a genome-wide association study
-
Eeles RA, Kote-Jarai Z, Al Olama AA, Giles GG, Guy M, Severi G, Muir K, Hopper JL, Henderson BE, Haiman CA, Schleutker J, Hamdy FC, et al. 2009. Identification of seven new prostate cancer susceptibility loci through a genome-wide association study. Nat Genet 41:1116-1121.
-
(2009)
Nat Genet
, vol.41
, pp. 1116-1121
-
-
Eeles, R.A.1
Kote-Jarai, Z.2
Al Olama, A.A.3
Giles, G.G.4
Guy, M.5
Severi, G.6
Muir, K.7
Hopper, J.L.8
Henderson, B.E.9
Haiman, C.A.10
Schleutker, J.11
Hamdy, F.C.12
-
15
-
-
78650019179
-
Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation
-
Figueroa ME, Abdel-Wahab O, Lu C, Ward PS, Patel J, Shih A, Li Y, Bhagwat N, Vasanthakumar A, Fernandez HF, Tallman MS, Sun Z, et al. 2010. Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation. Cancer Cell 18:553-567.
-
(2010)
Cancer Cell
, vol.18
, pp. 553-567
-
-
Figueroa, M.E.1
Abdel-Wahab, O.2
Lu, C.3
Ward, P.S.4
Patel, J.5
Shih, A.6
Li, Y.7
Bhagwat, N.8
Vasanthakumar, A.9
Fernandez, H.F.10
Tallman, M.S.11
Sun, Z.12
-
16
-
-
67650471685
-
Inhibition of poly(ADP-ribose) polymerase in tumors from BRCA mutation carriers
-
Fong PC, Boss DS, Yap TA, Tutt A, Wu P, Mergui-Roelvink M, Mortimer P, Swaisland H, Lau A, O'Connor MJ, Ashworth A, Carmichael J, Kaye SB, Schellens JH, de Bono JS. 2009. Inhibition of poly(ADP-ribose) polymerase in tumors from BRCA mutation carriers. New Engl J Med 361:123-134.
-
(2009)
New Engl J Med
, vol.361
, pp. 123-134
-
-
Fong, P.C.1
Boss, D.S.2
Yap, T.A.3
Tutt, A.4
Wu, P.5
Mergui-Roelvink, M.6
Mortimer, P.7
Swaisland, H.8
Lau, A.9
O'Connor, M.J.10
Ashworth, A.11
Carmichael, J.12
Kaye, S.B.13
Schellens, J.H.14
de Bono, J.S.15
-
17
-
-
57549098807
-
The Catalogue of Somatic Mutations in Cancer (COSMIC)
-
Forbes SA, Bhamra G, Bamford S, Dawson E, Kok C, Clements J, Menzies A, Teague JW, Futreal PA, Stratton MR. 2008. The Catalogue of Somatic Mutations in Cancer (COSMIC). Curr Protoc Hum Genet 57:10.11.1-10.11.26.
-
(2008)
Curr Protoc Hum Genet
, vol.57
, pp. 10111-101126
-
-
Forbes, S.A.1
Bhamra, G.2
Bamford, S.3
Dawson, E.4
Kok, C.5
Clements, J.6
Menzies, A.7
Teague, J.W.8
Futreal, P.A.9
Stratton, M.R.10
-
18
-
-
77950650763
-
Germline BRCA mutations denote a clinicopathologic subset of prostate cancer
-
Gallagher DJ, Gaudet MM, Pal P, Kirchhoff T, Balistreri L, Vora K, Bhatia J, Stadler Z, Fine SW, Reuter V, Zelefsky M, Morris MJ, et al. 2010. Germline BRCA mutations denote a clinicopathologic subset of prostate cancer. Clin Cancer Res 16:2115-2121.
-
(2010)
Clin Cancer Res
, vol.16
, pp. 2115-2121
-
-
Gallagher, D.J.1
Gaudet, M.M.2
Pal, P.3
Kirchhoff, T.4
Balistreri, L.5
Vora, K.6
Bhatia, J.7
Stadler, Z.8
Fine, S.W.9
Reuter, V.10
Zelefsky, M.11
Morris, M.J.12
-
19
-
-
71149084812
-
Global Cancer Facts & Figures 2007
-
Garcia M, Jemal A, Ward EM, Center MM, Hao Y, Siegel RL, Thun MJ. 2007. Global Cancer Facts & Figures 2007. American Cancer Society Website 1-44.
-
(2007)
American Cancer Society Website
, pp. 1-44
-
-
Garcia, M.1
Jemal, A.2
Ward, E.M.3
Center, M.M.4
Hao, Y.5
Siegel, R.L.6
Thun, M.J.7
-
20
-
-
84863723010
-
The mutational landscape of lethal castration-resistant prostate cancer
-
Grasso CS, Wu YM, Robinson DR, Cao X, Dhanasekaran SM, Khan AP, Quist MJ, Jing X, Lonigro RJ, Brenner JC, Asangani IA, Ateeq B, et al. 2012. The mutational landscape of lethal castration-resistant prostate cancer. Nature 487:239-243.
-
(2012)
Nature
, vol.487
, pp. 239-243
-
-
Grasso, C.S.1
Wu, Y.M.2
Robinson, D.R.3
Cao, X.4
Dhanasekaran, S.M.5
Khan, A.P.6
Quist, M.J.7
Jing, X.8
Lonigro, R.J.9
Brenner, J.C.10
Asangani, I.A.11
Ateeq, B.12
-
21
-
-
79955810336
-
Molecular profiling of chronic myelomonocytic leukemia reveals diverse mutations in >80% of patients with TET2 and EZH2 being of high prognostic relevance
-
Grossmann V, Kohlmann A, Eder C, Haferlach C, Kern W, Cross N, Haferlach T, Schnittger S. 2011. Molecular profiling of chronic myelomonocytic leukemia reveals diverse mutations in >80% of patients with TET2 and EZH2 being of high prognostic relevance. Leukemia 25:877-879.
-
(2011)
Leukemia
, vol.25
, pp. 877-879
-
-
Grossmann, V.1
Kohlmann, A.2
Eder, C.3
Haferlach, C.4
Kern, W.5
Cross, N.6
Haferlach, T.7
Schnittger, S.8
-
22
-
-
80052266351
-
Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder
-
Gui Y, Guo G, Huang Y, Hu X, Tang A, Gao S, Wu R, Chen C, Li X, Zhou L, He M, Li Z, et al. 2011. Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder. Nat Genet 43:875-878.
-
(2011)
Nat Genet
, vol.43
, pp. 875-878
-
-
Gui, Y.1
Guo, G.2
Huang, Y.3
Hu, X.4
Tang, A.5
Gao, S.6
Wu, R.7
Chen, C.8
Li, X.9
Zhou, L.10
He, M.11
Li, Z.12
-
23
-
-
77955069195
-
Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements
-
Haffner MC, Aryee MJ, Toubaji A, Esopi DM, Albadine R, Gurel B, Isaacs WB, Bova GS, Liu W, Xu J, Meeker AK, Netto G, De Marzo AM, Nelson WG, Yegnasubramanian S. 2010. Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements. Nat Genet 42:668-675.
-
(2010)
Nat Genet
, vol.42
, pp. 668-675
-
-
Haffner, M.C.1
Aryee, M.J.2
Toubaji, A.3
Esopi, D.M.4
Albadine, R.5
Gurel, B.6
Isaacs, W.B.7
Bova, G.S.8
Liu, W.9
Xu, J.10
Meeker, A.K.11
Netto, G.12
De Marzo, A.M.13
Nelson, W.G.14
Yegnasubramanian, S.15
-
24
-
-
79952284127
-
Hallmarks of cancer: the next generation
-
Hanahan D, Weinberg RA. 2011. Hallmarks of cancer: the next generation. Cell 144:646-674.
-
(2011)
Cell
, vol.144
, pp. 646-674
-
-
Hanahan, D.1
Weinberg, R.A.2
-
25
-
-
36549021060
-
Genome-wide in situ exon capture for selective resequencing
-
Hodges E, Xuan Z, Balija V, Kramer M, Molla MN, Smith SW, Middle CM, Rodesch MJ, Albert TJ, Hannon GJ, McCombie WR. 2007. Genome-wide in situ exon capture for selective resequencing. Nat Genet 39:1522-1527.
-
(2007)
Nat Genet
, vol.39
, pp. 1522-1527
-
-
Hodges, E.1
Xuan, Z.2
Balija, V.3
Kramer, M.4
Molla, M.N.5
Smith, S.W.6
Middle, C.M.7
Rodesch, M.J.8
Albert, T.J.9
Hannon, G.J.10
McCombie, W.R.11
-
26
-
-
35448946716
-
What can we learn from the population incidence of cancer? Armitage and Doll revisited
-
Hornsby C, Page KM, Tomlinson IP. 2007. What can we learn from the population incidence of cancer? Armitage and Doll revisited. Lancet Oncol 8:1030-1038.
-
(2007)
Lancet Oncol
, vol.8
, pp. 1030-1038
-
-
Hornsby, C.1
Page, K.M.2
Tomlinson, I.P.3
-
27
-
-
77956189495
-
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
-
Ito S, D'Alessio AC, Taranova OV, Hong K, Sowers LC, Zhang Y. 2010. Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 466:1129-1133.
-
(2010)
Nature
, vol.466
, pp. 1129-1133
-
-
Ito, S.1
D'Alessio, A.C.2
Taranova, O.V.3
Hong, K.4
Sowers, L.C.5
Zhang, Y.6
-
28
-
-
33846077413
-
Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together
-
Jayapandian M, Chapman A, Tarcea VG, Yu C, Elkiss A, Ianni A, Liu B, Nandi A, Santos C, Andrews P, Athey B, States D, Jagadish HV. 2007. Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together. Nucleic Acids Res 35:D566-D571.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Jayapandian, M.1
Chapman, A.2
Tarcea, V.G.3
Yu, C.4
Elkiss, A.5
Ianni, A.6
Liu, B.7
Nandi, A.8
Santos, C.9
Andrews, P.10
Athey, B.11
States, D.12
Jagadish, H.V.13
-
29
-
-
79952232216
-
Global cancer statistics
-
Jemal A, Bray F, Center MM, Ferlay J, Ward E, Forman D. 2011. Global cancer statistics. CA Cancer J Clin 61:69-90.
-
(2011)
CA Cancer J Clin
, vol.61
, pp. 69-90
-
-
Jemal, A.1
Bray, F.2
Center, M.M.3
Ferlay, J.4
Ward, E.5
Forman, D.6
-
30
-
-
41949139438
-
Comparative lesion sequencing provides insights into tumor evolution
-
Jones S, Chen WD, Parmigiani G, Diehl F, Beerenwinkel N, Antal T, Traulsen A, Nowak MA, Siegel C, Velculescu VE, Kinzler KW, Vogelstein B, Willis J, Markowitz SD. 2008. Comparative lesion sequencing provides insights into tumor evolution. Proc Natl Acad Sci USA 105:4283-4288.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 4283-4288
-
-
Jones, S.1
Chen, W.D.2
Parmigiani, G.3
Diehl, F.4
Beerenwinkel, N.5
Antal, T.6
Traulsen, A.7
Nowak, M.A.8
Siegel, C.9
Velculescu, V.E.10
Kinzler, K.W.11
Vogelstein, B.12
Willis, J.13
Markowitz, S.D.14
-
31
-
-
77957731999
-
Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma
-
Jones S, Wang T, Shih I, Mao T, Nakayama K, Roden R, Glas R, Slamon D, Diaz L Jr, Vogelstein B, Kinzler KW, Velculescu VE, Papadopoulos N. 2010. Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma. Science 330:228-231.
-
(2010)
Science
, vol.330
, pp. 228-231
-
-
Jones, S.1
Wang, T.2
Shih, I.3
Mao, T.4
Nakayama, K.5
Roden, R.6
Glas, R.7
Slamon, D.8
Diaz Jr, L.9
Vogelstein, B.10
Kinzler, K.W.11
Velculescu, V.E.12
Papadopoulos, N.13
-
32
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
Kent WJ. 2002. BLAT-the BLAST-like alignment tool. Genome Res 12:656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
33
-
-
0142178215
-
Breast and ovarian cancer risks due to inherited mutations in BRCA1 and BRCA2
-
King MC, Marks JH, Mandell JB. 2003. Breast and ovarian cancer risks due to inherited mutations in BRCA1 and BRCA2. Science 302:643-646.
-
(2003)
Science
, vol.302
, pp. 643-646
-
-
King, M.C.1
Marks, J.H.2
Mandell, J.B.3
-
34
-
-
69649109364
-
Circos: an information aesthetic for comparative genomics
-
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA. 2009. Circos: an information aesthetic for comparative genomics. Genome Res 19:1639-1645.
-
(2009)
Genome Res
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
Jones, S.J.7
Marra, M.A.8
-
35
-
-
68149165614
-
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
-
Kumar P, Henikoff S, Ng PC. 2009. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 4:1073-1081.
-
(2009)
Nat Protoc
, vol.4
, pp. 1073-1081
-
-
Kumar, P.1
Henikoff, S.2
Ng, P.C.3
-
36
-
-
80054751998
-
Exome sequencing identifies a spectrum of mutation frequencies in advanced and lethal prostate cancers
-
Kumar A, White TA, MacKenzie AP, Clegg N, Lee C, Dumpit RF, Coleman I, Ng SB, Salipante SJ, Rieder MJ, Nickerson DA, Corey E, et al. 2011. Exome sequencing identifies a spectrum of mutation frequencies in advanced and lethal prostate cancers. Proc Natl Acad Sci USA 108:17087-17092.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 17087-17092
-
-
Kumar, A.1
White, T.A.2
MacKenzie, A.P.3
Clegg, N.4
Lee, C.5
Dumpit, R.F.6
Coleman, I.7
Ng, S.B.8
Salipante, S.J.9
Rieder, M.J.10
Nickerson, D.A.11
Corey, E.12
-
37
-
-
71249101060
-
Nuclear receptor-induced chromosomal proximity and DNA breaks underlie specific translocations in cancer
-
Lin C, Yang L, Tanasa B, Hutt K, Ju B, Ohgi K, Zhang J, Rose D, Fu X, Glass C, Rosenfeld MG. 2009. Nuclear receptor-induced chromosomal proximity and DNA breaks underlie specific translocations in cancer. Cell 139:1069-1083.
-
(2009)
Cell
, vol.139
, pp. 1069-1083
-
-
Lin, C.1
Yang, L.2
Tanasa, B.3
Hutt, K.4
Ju, B.5
Ohgi, K.6
Zhang, J.7
Rose, D.8
Fu, X.9
Glass, C.10
Rosenfeld, M.G.11
-
38
-
-
14844364364
-
BAF57 governs androgen receptor action and androgen-dependent proliferation through SWI/SNF
-
Link K, Burd C, Williams E, Marshall T, Rosson G, Henry E, Weissman B, Knudsen K. 2005. BAF57 governs androgen receptor action and androgen-dependent proliferation through SWI/SNF. Molec Cell Biol 25:2200-2215.
-
(2005)
Molec Cell Biol
, vol.25
, pp. 2200-2215
-
-
Link, K.1
Burd, C.2
Williams, E.3
Marshall, T.4
Rosson, G.5
Henry, E.6
Weissman, B.7
Knudsen, K.8
-
39
-
-
67349257845
-
Copy number analysis indicates monoclonal origin of lethal metastatic prostate cancer
-
Liu W, Laitinen S, Khan S, Vihinen M, Kowalski J, Yu G, Chen L, Ewing CM, Eisenberger MA, Carducci MA, Nelson WG, Yegnasubramanian S, et al. 2009. Copy number analysis indicates monoclonal origin of lethal metastatic prostate cancer. Nat Med 15:560-565.
-
(2009)
Nat Med
, vol.15
, pp. 560-565
-
-
Liu, W.1
Laitinen, S.2
Khan, S.3
Vihinen, M.4
Kowalski, J.5
Yu, G.6
Chen, L.7
Ewing, C.M.8
Eisenberger, M.A.9
Carducci, M.A.10
Nelson, W.G.11
Yegnasubramanian, S.12
-
40
-
-
0041902737
-
Differential requirement of SWI/SNF for androgen receptor activity
-
Marshall T, Link K, Petre-Draviam C, Knudsen K. 2003. Differential requirement of SWI/SNF for androgen receptor activity. J Biol Chem 278:30605-30613.
-
(2003)
J Biol Chem
, vol.278
, pp. 30605-30613
-
-
Marshall, T.1
Link, K.2
Petre-Draviam, C.3
Knudsen, K.4
-
41
-
-
0018815211
-
Characterization of a human prostate adenocarcinoma cell line (DU 145) as a monolayer culture and as a solid tumor in athymic mice
-
Mickey DD, Stone KR, Wunderli H, Mickey GH, Paulson DF. 1980. Characterization of a human prostate adenocarcinoma cell line (DU 145) as a monolayer culture and as a solid tumor in athymic mice. Prog Clin Biol Res 37:67-84.
-
(1980)
Prog Clin Biol Res
, vol.37
, pp. 67-84
-
-
Mickey, D.D.1
Stone, K.R.2
Wunderli, H.3
Mickey, G.H.4
Paulson, D.F.5
-
42
-
-
77956513784
-
Incidence and prognostic value of TET2 alterations in de novo acute myeloid leukemia achieving complete remission
-
Nibourel O, Kosmider O, Cheok M, Boissel N, Renneville A, Philippe N, Dombret H, Dreyfus F, Quesnel B, Geffroy S, Quentin S, Roche-Lestienne C, et al. 2010. Incidence and prognostic value of TET2 alterations in de novo acute myeloid leukemia achieving complete remission. Blood 116:1132-1135.
-
(2010)
Blood
, vol.116
, pp. 1132-1135
-
-
Nibourel, O.1
Kosmider, O.2
Cheok, M.3
Boissel, N.4
Renneville, A.5
Philippe, N.6
Dombret, H.7
Dreyfus, F.8
Quesnel, B.9
Geffroy, S.10
Quentin, S.11
Roche-Lestienne, C.12
-
43
-
-
51049084870
-
Improved identification of von Hippel-Lindau gene alterations in clear cell renal tumors
-
Nickerson M, Jaeger E, Shi Y, Durocher J, Mahurkar S, Zaridze D, Matveev V, Janout V, Kollarova H, Bencko V, Navratilova M, Szeszenia-Dabrowska N, et al. 2008. Improved identification of von Hippel-Lindau gene alterations in clear cell renal tumors. Clin Cancer Res 14:4726-4734.
-
(2008)
Clin Cancer Res
, vol.14
, pp. 4726-4734
-
-
Nickerson, M.1
Jaeger, E.2
Shi, Y.3
Durocher, J.4
Mahurkar, S.5
Zaridze, D.6
Matveev, V.7
Janout, V.8
Kollarova, H.9
Bencko, V.10
Navratilova, M.11
Szeszenia-Dabrowska, N.12
-
44
-
-
70349739736
-
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
-
Nicol JW, Helt GA, Blanchard SG, Jr., Raja A, Loraine AE. 2009. The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics 25:2730-2731.
-
(2009)
Bioinformatics
, vol.25
, pp. 2730-2731
-
-
Nicol, J.W.1
Helt, G.A.2
Blanchard Jr, S.G.3
Raja, A.4
Loraine, A.E.5
-
45
-
-
35748959649
-
Microarray-based genomic selection for high-throughput resequencing
-
Okou DT, Steinberg KM, Middle C, Cutler DJ, Albert TJ, Zwick ME. 2007. Microarray-based genomic selection for high-throughput resequencing. Nat Methods 4:907-909.
-
(2007)
Nat Methods
, vol.4
, pp. 907-909
-
-
Okou, D.T.1
Steinberg, K.M.2
Middle, C.3
Cutler, D.J.4
Albert, T.J.5
Zwick, M.E.6
-
46
-
-
67650064594
-
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
-
Pruitt KD, Harrow J, Harte RA, Wallin C, Diekhans M, Maglott DR, Searle S, Farrell CM, Loveland JE, Ruef BJ, Hart E, Suner MM, et al. 2009. The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes. Genome Res 19:1316-1323.
-
(2009)
Genome Res
, vol.19
, pp. 1316-1323
-
-
Pruitt, K.D.1
Harrow, J.2
Harte, R.A.3
Wallin, C.4
Diekhans, M.5
Maglott, D.R.6
Searle, S.7
Farrell, C.M.8
Loveland, J.E.9
Ruef, B.J.10
Hart, E.11
Suner, M.M.12
-
47
-
-
75549089967
-
The UCSC Genome Browser database: update 2010
-
Rhead B, Karolchik D, Kuhn RM, Hinrichs AS, Zweig AS, Fujita PA, Diekhans M, Smith KE, Rosenbloom KR, Raney BJ, Pohl A, Pheasant M, et al. 2010. The UCSC Genome Browser database: update 2010. Nucleic Acids Res 38:D613-D619.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Rhead, B.1
Karolchik, D.2
Kuhn, R.M.3
Hinrichs, A.S.4
Zweig, A.S.5
Fujita, P.A.6
Diekhans, M.7
Smith, K.E.8
Rosenbloom, K.R.9
Raney, B.J.10
Pohl, A.11
Pheasant, M.12
-
48
-
-
78651521293
-
Copy number and targeted mutational analysis reveals novel somatic events in metastatic prostate tumors
-
Robbins C, Tembe W, Baker A, Sinari S, Moses T, Beckstrom-Sternberg S, Beckstrom-Sternberg J, Barrett M, Long J, Chinnaiyan A, Lowey J, Suh E, et al. 2011. Copy number and targeted mutational analysis reveals novel somatic events in metastatic prostate tumors. Genome Res 21:47-55.
-
(2011)
Genome Res
, vol.21
, pp. 47-55
-
-
Robbins, C.1
Tembe, W.2
Baker, A.3
Sinari, S.4
Moses, T.5
Beckstrom-Sternberg, S.6
Beckstrom-Sternberg, J.7
Barrett, M.8
Long, J.9
Chinnaiyan, A.10
Lowey, J.11
Suh, E.12
-
49
-
-
1042290351
-
The SWI/SNF complex-chromatin and cancer
-
Roberts C, Orkin S. 2004. The SWI/SNF complex-chromatin and cancer. Nat Rev Cancer 4:133-142.
-
(2004)
Nat Rev Cancer
, vol.4
, pp. 133-142
-
-
Roberts, C.1
Orkin, S.2
-
50
-
-
78651271733
-
Integrative genomics viewer
-
Robinson JT, Thorvaldsdottir H, Winckler W, Guttman M, Lander ES, Getz G, Mesirov JP. 2011. Integrative genomics viewer. Nat Biotechnol 29:24-26.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdottir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
Getz, G.6
Mesirov, J.P.7
-
51
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky H. 2000. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132:365-386.
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
52
-
-
77950388949
-
Clonal analysis of TET2 and JAK2 mutations suggests that TET2 can be a late event in the progression of myeloproliferative neoplasms
-
Schaub FX, Looser R, Li S, Hao-Shen H, Lehmann T, Tichelli A, Skoda RC. 2010. Clonal analysis of TET2 and JAK2 mutations suggests that TET2 can be a late event in the progression of myeloproliferative neoplasms. Blood 115:2003-2007.
-
(2010)
Blood
, vol.115
, pp. 2003-2007
-
-
Schaub, F.X.1
Looser, R.2
Li, S.3
Hao-Shen, H.4
Lehmann, T.5
Tichelli, A.6
Skoda, R.C.7
-
53
-
-
77955151784
-
MutationTaster evaluates disease-causing potential of sequence alterations
-
Schwarz JM, Rodelsperger C, Schuelke M, Seelow D. 2010. MutationTaster evaluates disease-causing potential of sequence alterations. Nat Methods 7:575-576.
-
(2010)
Nat Methods
, vol.7
, pp. 575-576
-
-
Schwarz, J.M.1
Rodelsperger, C.2
Schuelke, M.3
Seelow, D.4
-
54
-
-
0018090233
-
Isolation of a human prostate carcinoma cell line (DU 145)
-
Stone KR, Mickey DD, Wunderli H, Mickey GH, Paulson DF. 1978. Isolation of a human prostate carcinoma cell line (DU 145). Int J Cancer 21:274-281.
-
(1978)
Int J Cancer
, vol.21
, pp. 274-281
-
-
Stone, K.R.1
Mickey, D.D.2
Wunderli, H.3
Mickey, G.H.4
Paulson, D.F.5
-
55
-
-
79953158399
-
Exploring the genomes of cancer cells: progress and promise
-
Stratton MR. 2011. Exploring the genomes of cancer cells: progress and promise. Science 331:1553-1558.
-
(2011)
Science
, vol.331
, pp. 1553-1558
-
-
Stratton, M.R.1
-
56
-
-
0030910022
-
The risk of cancer associated with specific mutations of BRCA1 and BRCA2 among Ashkenazi Jews
-
Struewing JP, Hartge P, Wacholder S, Baker SM, Berlin M, McAdams M, Timmerman MM, Brody LC, Tucker MA. 1997. The risk of cancer associated with specific mutations of BRCA1 and BRCA2 among Ashkenazi Jews. N Engl J Med 336:1401-1408.
-
(1997)
N Engl J Med
, vol.336
, pp. 1401-1408
-
-
Struewing, J.P.1
Hartge, P.2
Wacholder, S.3
Baker, S.M.4
Berlin, M.5
McAdams, M.6
Timmerman, M.M.7
Brody, L.C.8
Tucker, M.A.9
-
57
-
-
34548482266
-
Cofactor of BRCA1 modulates androgen-dependent transcription and alternative splicing
-
Sun J, Blair A, Aiyar S, Li R. 2007. Cofactor of BRCA1 modulates androgen-dependent transcription and alternative splicing. J Steroid Biochem Mol Biol 107:131-139.
-
(2007)
J Steroid Biochem Mol Biol
, vol.107
, pp. 131-139
-
-
Sun, J.1
Blair, A.2
Aiyar, S.3
Li, R.4
-
58
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani M, Koh KP, Shen Y, Pastor WA, Bandukwala H, Brudno Y, Agarwal S, Iyer LM, Liu DR, Aravind L, Rao A. 2009. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324:930-935.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
Rao, A.11
-
59
-
-
77954218952
-
Structure and function of SWI/SNF chromatin remodeling complexes and mechanistic implications for transcription
-
Tang L, Nogales E, Ciferri C. 2010. Structure and function of SWI/SNF chromatin remodeling complexes and mechanistic implications for transcription. Prog Biophys Mol Biol 102:122-128.
-
(2010)
Prog Biophys Mol Biol
, vol.102
, pp. 122-128
-
-
Tang, L.1
Nogales, E.2
Ciferri, C.3
-
60
-
-
58149181372
-
Michigan molecular interactions r2: from interacting proteins to pathways
-
Tarcea VG, Weymouth T, Ade A, Bookvich A, Gao J, Mahavisno V, Wright Z, Chapman A, Jayapandian M, Ozgur A, Tian Y, Cavalcoli J, et al. 2009. Michigan molecular interactions r2: from interacting proteins to pathways. Nucleic Acids Res. 37:D642-D646.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Tarcea, V.G.1
Weymouth, T.2
Ade, A.3
Bookvich, A.4
Gao, J.5
Mahavisno, V.6
Wright, Z.7
Chapman, A.8
Jayapandian, M.9
Ozgur, A.10
Tian, Y.11
Cavalcoli, J.12
-
61
-
-
77954255681
-
Integrative genomic profiling of human prostate cancer
-
Taylor B, Schultz N, Hieronymus H, Gopalan A, Xiao Y, Carver B, Arora V, Kaushik P, Cerami E, Reva B, Antipin Y, Mitsiades N, et al. 2010. Integrative genomic profiling of human prostate cancer. Cancer Cell 18:11-22.
-
(2010)
Cancer Cell
, vol.18
, pp. 11-22
-
-
Taylor, B.1
Schultz, N.2
Hieronymus, H.3
Gopalan, A.4
Xiao, Y.5
Carver, B.6
Arora, V.7
Kaushik, P.8
Cerami, E.9
Reva, B.10
Antipin, Y.11
Mitsiades, N.12
-
62
-
-
60249101576
-
Polybromo-1: the chromatin targeting subunit of the PBAF complex
-
Thompson M. 2009. Polybromo-1: the chromatin targeting subunit of the PBAF complex. Biochimie 91:309-319.
-
(2009)
Biochimie
, vol.91
, pp. 309-319
-
-
Thompson, M.1
-
63
-
-
27344451557
-
Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer
-
Tomlins SA, Rhodes DR, Perner S, Dhanasekaran SM, Mehra R, Sun XW, Varambally S, Cao X, Tchinda J, Kuefer R, Lee C, Montie JE, et al. 2005. Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer. Science 310:644-648.
-
(2005)
Science
, vol.310
, pp. 644-648
-
-
Tomlins, S.A.1
Rhodes, D.R.2
Perner, S.3
Dhanasekaran, S.M.4
Mehra, R.5
Sun, X.W.6
Varambally, S.7
Cao, X.8
Tchinda, J.9
Kuefer, R.10
Lee, C.11
Montie, J.E.12
-
64
-
-
16044366171
-
Frequency of recurrent BRCA1 and BRCA2 mutations in Ashkenazi Jewish breast cancer families
-
Tonin P, Weber B, Offit K, Couch F, Rebbeck TR, Neuhausen S, Godwin AK, Daly M, Wagner-Costalos J, Berman D, Grana G, Fox E, et al. 1996. Frequency of recurrent BRCA1 and BRCA2 mutations in Ashkenazi Jewish breast cancer families. Nat Med 2:1179-1183.
-
(1996)
Nat Med
, vol.2
, pp. 1179-1183
-
-
Tonin, P.1
Weber, B.2
Offit, K.3
Couch, F.4
Rebbeck, T.R.5
Neuhausen, S.6
Godwin, A.K.7
Daly, M.8
Wagner-Costalos, J.9
Berman, D.10
Grana, G.11
Fox, E.12
-
65
-
-
79251635938
-
Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma
-
Varela I, Tarpey P, Raine K, Huang D, Ong CK, Stephens P, Davies H, Jones D, Lin ML, Teague J, Bignell G, Butler A, et al. 2011. Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma. Nature 469:539-542.
-
(2011)
Nature
, vol.469
, pp. 539-542
-
-
Varela, I.1
Tarpey, P.2
Raine, K.3
Huang, D.4
Ong, C.K.5
Stephens, P.6
Davies, H.7
Jones, D.8
Lin, M.L.9
Teague, J.10
Bignell, G.11
Butler, A.12
-
66
-
-
4043181214
-
Cancer genes and the pathways they control
-
Vogelstein B, Kinzler KW. 2004. Cancer genes and the pathways they control. Nat Med 10:789-799.
-
(2004)
Nat Med
, vol.10
, pp. 789-799
-
-
Vogelstein, B.1
Kinzler, K.W.2
-
67
-
-
40949111565
-
BAF180 is a critical regulator of p21 induction and a tumor suppressor mutated in breast cancer
-
Xia W, Nagase S, Montia AG, Kalachikov SM, Keniry M, Su T, Memeo L, Hibshoosh H, Parsons R. 2008. BAF180 is a critical regulator of p21 induction and a tumor suppressor mutated in breast cancer. Cancer Res 68:1667-1674.
-
(2008)
Cancer Res
, vol.68
, pp. 1667-1674
-
-
Xia, W.1
Nagase, S.2
Montia, A.G.3
Kalachikov, S.M.4
Keniry, M.5
Su, T.6
Memeo, L.7
Hibshoosh, H.8
Parsons, R.9
-
68
-
-
0035842893
-
BRCA1-induced large-scale chromatin unfolding and allele-specific effects of cancer-predisposing mutations
-
Ye Q, Hu Y, Zhong H, Nye A, Belmont A, Li R. 2001. BRCA1-induced large-scale chromatin unfolding and allele-specific effects of cancer-predisposing mutations. J Cell Biol 155:911-921.
-
(2001)
J Cell Biol
, vol.155
, pp. 911-921
-
-
Ye, Q.1
Hu, Y.2
Zhong, H.3
Nye, A.4
Belmont, A.5
Li, R.6
|