-
1
-
-
24344452361
-
A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain
-
McKee A., Minet E., Stern C., Riahi S., Stiles C. and Silver P. (2005) A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. BMC Dev. Biol., 5, 14
-
(2005)
BMC Dev. Biol
, vol.5
, pp. 14
-
-
McKee, A.1
Minet, E.2
Stern, C.3
Riahi, S.4
Stiles, C.5
Silver, P.6
-
2
-
-
72849106592
-
RNA processing and its regulation: Global insights into biological networks
-
Licatalosi D.D. and Darnell R.B. (2010) RNA processing and its regulation: Global insights into biological networks. Nat. Rev. Genet., 11, 75-87
-
(2010)
Nat. Rev. Genet
, vol.11
, pp. 75-87
-
-
Licatalosi, D.D.1
Darnell, R.B.2
-
3
-
-
80053027909
-
Functional consequences of developmentally regulated alternative splicing
-
Kalsotra A. and Cooper T.A. (2011) Functional consequences of developmentally regulated alternative splicing. Nat. Rev. Genet., 12, 715-729
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 715-729
-
-
Kalsotra, A.1
Cooper, T.A.2
-
5
-
-
33749054403
-
Splicing regulation in neurologic disease
-
Licatalosi D.D. and Darnell R.B. (2006) Splicing regulation in neurologic disease. Neuron, 52, 93-101
-
(2006)
Neuron
, vol.52
, pp. 93-101
-
-
Licatalosi, D.D.1
Darnell, R.B.2
-
6
-
-
0030992812
-
The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo
-
Buckanovich R.J. and Darnell R.B. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol. Cell. Biol., 17, 3194-3201
-
(1997)
Mol. Cell. Biol
, vol.17
, pp. 3194-3201
-
-
Buckanovich, R.J.1
Darnell, R.B.2
-
7
-
-
0034705034
-
The tetranucleotide UCAY directs the specific recognition of RNA by the Nova K-homology 3 domain
-
Jensen K.B., Musunuru K., Lewis H.A., Burley S.K. and Darnell R.B. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the Nova K-homology 3 domain. Proc. Natl Acad. Sci. USA, 97, 5740-5745
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 5740-5745
-
-
Jensen, K.B.1
Musunuru, K.2
Lewis, H.A.3
Burley, S.K.4
Darnell, R.B.5
-
8
-
-
0034603208
-
Sequence-specific RNA binding by a Nova KH domain: Implications for paraneoplastic disease and the fragile X syndrome
-
Lewis H.A., Musunuru K., Jensen K.B., Edo C., Chen H., Darnell R.B. and Burley S.K. (2000) Sequence-specific RNA binding by a Nova KH domain: Implications for paraneoplastic disease and the fragile X syndrome. Cell, 100, 323-332
-
(2000)
Cell
, vol.100
, pp. 323-332
-
-
Lewis, H.A.1
Musunuru, K.2
Jensen, K.B.3
Edo, C.4
Chen, H.5
Darnell, R.B.6
Burley, S.K.7
-
9
-
-
18444362088
-
Nova autoregulation reveals dual functions in neuronal splicing
-
Dredge B.K., Stefani G., Engelhard C.C. and Darnell R.B. (2005) Nova autoregulation reveals dual functions in neuronal splicing. EMBO J., 24, 1608-1620
-
(2005)
EMBO J.
, vol.24
, pp. 1608-1620
-
-
Dredge, B.K.1
Stefani, G.2
Engelhard, C.C.3
Darnell, R.B.4
-
10
-
-
0038382977
-
Nova regulates GABAA receptor g2 alternative splicing via a distal downstream UCAUrich intronic splicing enhancer
-
Dredge B.K. and Darnell R.B. (2003) Nova regulates GABAA receptor g2 alternative splicing via a distal downstream UCAUrich intronic splicing enhancer. Mol. Cell. Biol., 23, 4687-4700
-
(2003)
Mol. Cell. Biol
, vol.23
, pp. 4687-4700
-
-
Dredge, B.K.1
Darnell, R.B.2
-
11
-
-
77952306763
-
MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing
-
Goers E.S., Purcell J., Voelker R.B., Gates D.P. and Berglund J.A. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res., 38, 2467-2484
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 2467-2484
-
-
Goers, E.S.1
Purcell, J.2
Voelker, R.B.3
Gates, D.P.4
Berglund, J.A.5
-
12
-
-
76249102027
-
Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy
-
Du H., Cline M.S., Osborne R.J., Tuttle D.L., Clark T.A., Donohue J.P., Hall M.P., Shiue L., Swanson M.S., Thornton C.A. et al. (2010) Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy. Nat. Struct. Mol. Biol., 17, 187-193
-
(2010)
Nat. Struct. Mol. Biol
, vol.17
, pp. 187-193
-
-
Du, H.1
Cline, M.S.2
Osborne, R.J.3
Tuttle, D.L.4
Clark, T.A.5
Donohue, J.P.6
Hall, M.P.7
Shiue, L.8
Swanson, M.S.9
Thornton, C.A.10
-
13
-
-
0030878682
-
Mutation of PTB binding sites causes misregulation of alternative 30 splice site selection in vivo
-
Perez I., Lin C.H., McAfee J.G. and Patton J.G. (1997) Mutation of PTB binding sites causes misregulation of alternative 30 splice site selection in vivo. RNA, 3, 764-778
-
(1997)
RNA
, vol.3
, pp. 764-778
-
-
Perez, I.1
Lin, C.H.2
McAfee, J.G.3
Patton, J.G.4
-
14
-
-
84864020005
-
Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain
-
Licatalosi D.D., Yano M., Fak J.J., Mele A., Grabinski S.E., Zhang C. and Darnell R.B. (2012) Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain. Genes Dev., 26, 1626-1642
-
(2012)
Genes Dev
, vol.26
, pp. 1626-1642
-
-
Licatalosi, D.D.1
Yano, M.2
Fak, J.J.3
Mele, A.4
Grabinski, S.E.5
Zhang, C.6
Darnell, R.B.7
-
15
-
-
0028054162
-
Selection of a subset of mRNAs from combinatorial 30 untranslated region libraries using neuronal RNA-binding protein Hel-N1
-
Gao F.B., Carson C.C., Levine T. and Keene J.D. (1994) Selection of a subset of mRNAs from combinatorial 30 untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc. Natl Acad. Sci. USA, 91, 11207-11211
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 11207-11211
-
-
Gao, F.B.1
Carson, C.C.2
Levine, T.3
Keene, J.D.4
-
16
-
-
0027314350
-
Hel-N1: An autoimmune RNA-binding protein with specificity for 30 uridylate-rich untranslated regions of growth factor mRNAs
-
Levine T.D., Gao F., King P.H., Andrews L.G. and Keene J.D. (1993) Hel-N1: An autoimmune RNA-binding protein with specificity for 30 uridylate-rich untranslated regions of growth factor mRNAs. Mol. Cell. Biol., 13, 3494-3504
-
(1993)
Mol. Cell. Biol
, vol.13
, pp. 3494-3504
-
-
Levine, T.D.1
Gao, F.2
King, P.H.3
Andrews, L.G.4
Keene, J.D.5
-
17
-
-
70350569286
-
Mechanisms of alternative splicing regulation: Insights from molecular and genomics approaches
-
Chen M. and Manley J.L. (2009) Mechanisms of alternative splicing regulation: Insights from molecular and genomics approaches. Nat. Rev. Mol. Cell Biol., 10
-
(2009)
Nat. Rev. Mol. Cell Biol
, vol.10
-
-
Chen, M.1
Manley, J.L.2
-
18
-
-
26944489645
-
Building specificity with nonspecific RNA-binding proteins
-
Singh R. and Valcarcel J. (2005) Building specificity with nonspecific RNA-binding proteins. Nat. Struct. Mol. Biol., 12, 645-653
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 645-653
-
-
Singh, R.1
Valcarcel, J.2
-
19
-
-
34249316905
-
RNA-binding proteins: Modular design for efficient function
-
Lunde B.M., Moore C. and Varani G. (2007) RNA-binding proteins: Modular design for efficient function. Nat. Rev. Mol. Cell Biol., 8, 479-490
-
(2007)
Nat. Rev. Mol. Cell Biol
, vol.8
, pp. 479-490
-
-
Lunde, B.M.1
Moore, C.2
Varani, G.3
-
20
-
-
78651308986
-
RBPDB: A database of RNA-binding specificities
-
Cook K.B., Kazan H., Zuberi K., Morris Q. and Hughes T.R. (2011) RBPDB: A database of RNA-binding specificities. Nucleic Acids Res., 39, D301-D308
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Cook, K.B.1
Kazan, H.2
Zuberi, K.3
Morris, Q.4
Hughes, T.R.5
-
21
-
-
0033757702
-
Nova-1 regulates neuron-specific alternative splicing and is essential for neuronal viability
-
Jensen K.B., Dredge B.K., Stefani G., Zhong R., Buckanovich R.J., Okano H.J., Yang Y.Y.L. and Darnell R.B. (2000) Nova-1 regulates neuron-specific alternative splicing and is essential for neuronal viability. Neuron, 25, 359-371
-
(2000)
Neuron
, vol.25
, pp. 359-371
-
-
Jensen, K.B.1
Dredge, B.K.2
Stefani, G.3
Zhong, R.4
Buckanovich, R.J.5
Okano, H.J.6
Yang, Y.Y.L.7
Darnell, R.B.8
-
22
-
-
33749056769
-
An RNA map predicting Nova-dependent splicing regulation
-
Ule J., Stefani G., Mele A., Ruggiu M., Wang X., Taneri B., Gaasterland T., Blencowe B.J. and Darnell R.B. (2006) An RNA map predicting Nova-dependent splicing regulation. Nature, 444, 580-586
-
(2006)
Nature
, vol.444
, pp. 580-586
-
-
Ule, J.1
Stefani, G.2
Mele, A.3
Ruggiu, M.4
Wang, X.5
Taneri, B.6
Gaasterland, T.7
Blencowe, B.J.8
Darnell, R.B.9
-
23
-
-
35548940665
-
Neuronal regulation of alternative pre-mRNA splicing
-
Li Q., Lee J.A. and Black D.L. (2007) Neuronal regulation of alternative pre-mRNA splicing. Nat. Rev. Neurosci., 8, 819-831
-
(2007)
Nat. Rev. Neurosci
, vol.8
, pp. 819-831
-
-
Li, Q.1
Lee, J.A.2
Black, D.L.3
-
24
-
-
77954838957
-
Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls
-
Zhang C., Frias M.A., Mele A., Ruggiu M., Eom T., Marney C.B., Wang H., Licatalosi D.D., Fak J.J. and Darnell R.B. (2010) Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls. Science, 329, 439-443
-
(2010)
Science
, vol.329
, pp. 439-443
-
-
Zhang, C.1
Frias, M.A.2
Mele, A.3
Ruggiu, M.4
Eom, T.5
Marney, C.B.6
Wang, H.7
Licatalosi, D.D.8
Fak, J.J.9
Darnell, R.B.10
-
25
-
-
42449129287
-
Searching for splicing motifs
-
Chap 6rftxt Blencowe B.J. and Graveley B.R. (eds. Landes Bioscience, Austin, TX
-
Chasin L.A. (2007) Searching for splicing motifs, Chap 6. In: Blencowe B.J. and Graveley B.R. (eds), Alternative Splicing in the Postgenomic Era. Landes Bioscience, Austin, TX, pp. 85-106
-
(2007)
Alternative Splicing in the Postgenomic Era
, pp. 85-106
-
-
Chasin, L.A.1
-
26
-
-
26944489263
-
Target rna motif and target mrnas of the quaking star protein
-
Galarneau A. and Richard S. (2005) Target RNA motif and target mRNAs of the Quaking STAR protein. Nat. Struct. Mol. Biol., 12, 691-698
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 691-698
-
-
Galarneau, A.1
Richard, S.2
-
27
-
-
0034072450
-
DNA binding sites: Representation and discovery
-
Stormo G.D. (2000) DNA binding sites: Representation and discovery. Bioinformatics, 16, 16-23
-
(2000)
Bioinformatics
, vol.16
, pp. 16-23
-
-
Stormo, G.D.1
-
28
-
-
51949111100
-
Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2
-
Zhang C., Zhang Z., Castle J., Sun S., Johnson J., Krainer A.R. and Zhang M.Q. (2008) Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. Genes Dev., 22, 2550-2563
-
(2008)
Genes Dev
, vol.22
, pp. 2550-2563
-
-
Zhang, C.1
Zhang, Z.2
Castle, J.3
Sun, S.4
Johnson, J.5
Krainer, A.R.6
Zhang, M.Q.7
-
29
-
-
0242497663
-
CLIP identifies Nova-regulated RNA networks in the brain
-
Ule J., Jensen K.B., Ruggiu M., Mele A., Ule A. and Darnell R.B. (2003) CLIP identifies Nova-regulated RNA networks in the brain. Science, 302, 1212-1215
-
(2003)
Science
, vol.302
, pp. 1212-1215
-
-
Ule, J.1
Jensen, K.B.2
Ruggiu, M.3
Mele, A.4
Ule, A.5
Darnell, R.B.6
-
30
-
-
77953928753
-
HITS-CLIP: Panoramic views of protein-RNA regulation in living cells
-
Darnell R.B. (2010) HITS-CLIP: Panoramic views of protein-RNA regulation in living cells. Wiley Interdiscip. Rev. RNA, 1, 266-286
-
(2010)
Wiley Interdiscip Rev. RNA
, vol.1
, pp. 266-286
-
-
Darnell, R.B.1
-
31
-
-
56549105330
-
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
-
Licatalosi D.D., Mele A., Fak J.J., Ule J., Kayikci M., Chi S.W., Clark T.A., Schweitzer A.C., Blume J.E., Wang X. et al. (2008) HITS-CLIP yields genome-wide insights into brain alternative RNA processing. Nature, 456, 464-469
-
(2008)
Nature
, vol.456
, pp. 464-469
-
-
Licatalosi, D.D.1
Mele, A.2
Fak, J.J.3
Ule, J.4
Kayikci, M.5
Chi, S.W.6
Clark, T.A.7
Schweitzer, A.C.8
Blume, J.E.9
Wang, X.10
-
32
-
-
36049018312
-
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
-
Stark A., Lin M.F., Kheradpour P., Pedersen J.S., Parts L., Carlson J.W., Crosby M.A., Rasmussen M.D., Roy S., Deoras A.N. et al. (2007) Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature, 450, 219-232
-
(2007)
Nature
, vol.450
, pp. 219-232
-
-
Stark, A.1
Lin, M.F.2
Kheradpour, P.3
Pedersen, J.S.4
Parts, L.5
Carlson, J.W.6
Crosby, M.A.7
Rasmussen, M.D.8
Roy, S.9
Deoras, A.N.10
-
33
-
-
37349056702
-
PremRNA secondary structures influence exon recognition
-
Hiller M., Zhang Z., Backofen R. and Stamm S. (2007) PremRNA secondary structures influence exon recognition. PLoS Genet., 3, e204
-
(2007)
PLoS Genet
, vol.3
-
-
Hiller, M.1
Zhang, Z.2
Backofen, R.3
Stamm, S.4
-
34
-
-
47949120992
-
Conserved RNA secondary structures promote alternative splicing
-
Shepard P.J. and Hertel K.J. (2008) Conserved RNA secondary structures promote alternative splicing. RNA, 14, 1463-1469
-
(2008)
RNA
, vol.14
, pp. 1463-1469
-
-
Shepard, P.J.1
Hertel, K.J.2
-
35
-
-
84864912095
-
Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy
-
Charizanis K., Lee K.Y., Batra R., Goodwin M., Zhang C., Yuan Y., Shiue L., Cline M., Scotti M.M., Xia G. et al. (2012) Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy. Neuron, 75, 437-450
-
(2012)
Neuron
, vol.75
, pp. 437-450
-
-
Charizanis, K.1
Lee, K.Y.2
Batra, R.3
Goodwin, M.4
Zhang, C.5
Yuan, Y.6
Shiue, L.7
Cline, M.8
Scotti, M.M.9
Xia, G.10
-
36
-
-
0032784908
-
Interspersed repeats and other mementos of transposable elements in mammalian genomes
-
Smit A.F.A. (1999) Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr. Opin. Genet. Dev., 9, 657-663
-
(1999)
Curr. Opin. Genet. Dev
, vol.9
, pp. 657-663
-
-
Smit, A.F.A.1
-
37
-
-
75549089967
-
The UCSC Genome Browser database: Update 2010
-
Rhead B., Karolchik D., Kuhn R.M., Hinrichs A.S., Zweig A.S., Fujita P.A., Diekhans M., Smith K.E., Rosenbloom K.R., Raney B.J. et al. (2010) The UCSC Genome Browser database: Update 2010. Nucleic Acids Res., 38, D613-D619
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Rhead, B.1
Karolchik, D.2
Kuhn, R.M.3
Hinrichs, A.S.4
Zweig, A.S.5
Fujita, P.A.6
Diekhans, M.7
Smith, K.E.8
Rosenbloom, K.R.9
Raney, B.J.10
-
38
-
-
84863275756
-
Muscleblind-like 1 knockout mice reveal novel splicing defects in the myotonic dystrophy brain
-
Suenaga K., Lee K.Y., Nakamori M., Tatsumi Y., Takahashi M.P., Fujimura H., Jinnai K., Yoshikawa H., Du H., Ares M. Jr et al. (2012) Muscleblind-like 1 knockout mice reveal novel splicing defects in the myotonic dystrophy brain. PLoS One, 7, e33218
-
(2012)
PLoS One
, vol.7
-
-
Suenaga, K.1
Lee, K.Y.2
Nakamori, M.3
Tatsumi, Y.4
Takahashi, M.P.5
Fujimura, H.6
Jinnai, K.7
Yoshikawa, H.8
Du, H.9
Ares Jr., M.10
-
39
-
-
23044431574
-
Nova regulates brain-specific splicing to shape the synapse
-
Ule J., Ule A., Spencer J., Williams A., Hu J.S., Cline M., Wang H., Clark T., Fraser C., Ruggiu M. et al. (2005) Nova regulates brain-specific splicing to shape the synapse. Nature Genet., 37, 844-852
-
(2005)
Nature Genet
, vol.37
, pp. 844-852
-
-
Ule, J.1
Ule, A.2
Spencer, J.3
Williams, A.4
Hu, J.S.5
Cline, M.6
Wang, H.7
Clark, T.8
Fraser, C.9
Ruggiu, M.10
-
40
-
-
17544367787
-
Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities
-
Nakahata S. and Kawamoto S. (2005) Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities. Nucleic Acids Res., 33, 2078-2089
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2078-2089
-
-
Nakahata, S.1
Kawamoto, S.2
-
43
-
-
0346243804
-
A muscleblind knockout model for myotonic dystrophy
-
Kanadia R.N., Johnstone K.A., Mankodi A., Lungu C., Thornton C.A., Esson D., Timmers A.M., Hauswirth W.W. and Swanson M.S. (2003) A muscleblind knockout model for myotonic dystrophy. Science, 302, 1978-1980
-
(2003)
Science
, vol.302
, pp. 1978-1980
-
-
Kanadia, R.N.1
Johnstone, K.A.2
Mankodi, A.3
Lungu, C.4
Thornton, C.A.5
Esson, D.6
Timmers, A.M.7
Hauswirth, W.W.8
Swanson, M.S.9
-
44
-
-
0042698594
-
Developmental expression of mouse muscleblind genes Mbnl1 Mbnl2 and Mbnl3
-
Kanadia R.N., Urbinati C.R., Crusselle V.J., Luo D., Lee Y.J., Harrison J.K., Oh S.P. and Swanson M.S. (2003) Developmental expression of mouse muscleblind genes Mbnl1, Mbnl2 and Mbnl3. Gene Expr. Patterns, 3, 459-462
-
(2003)
Gene Expr. Patterns
, vol.3
, pp. 459-462
-
-
Kanadia, R.N.1
Urbinati, C.R.2
Crusselle, V.J.3
Luo, D.4
Lee, Y.J.5
Harrison, J.K.6
Oh, S.P.7
Swanson, M.S.8
-
45
-
-
0038005018
-
DAVID: Database for annotation, visualization, and integrated discovery
-
Dennis G., Sherman B., Hosack D., Yang J., Gao W., Lane H. and Lempicki R. (2003) DAVID: Database for annotation, visualization, and integrated discovery. Genome Biol., 4, R60
-
(2003)
Genome Biol
, vol.4
-
-
Dennis, G.1
Sherman, B.2
Hosack, D.3
Yang, J.4
Gao, W.5
Lane, H.6
Lempicki, R.7
-
46
-
-
33745248133
-
Failure of MBNL1-dependent post-natal splicing transitions in myotonic dystrophy
-
Lin X., Miller J.W., Mankodi A., Kanadia R.N., Yuan Y., Moxley R.T., Swanson M.S. and Thornton C.A. (2006) Failure of MBNL1-dependent post-natal splicing transitions in myotonic dystrophy. Hum. Mol. Genet., 15, 2087-2097
-
(2006)
Hum. Mol. Genet
, vol.15
, pp. 2087-2097
-
-
Lin, X.1
Miller, J.W.2
Mankodi, A.3
Kanadia, R.N.4
Yuan, Y.5
Moxley, R.T.6
Swanson, M.S.7
Thornton, C.A.8
-
47
-
-
79960230895
-
Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
-
Zhang C. and Darnell R.B. (2011) Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data. Nat. Biotech., 29, 607-614
-
(2011)
Nat. Biotech
, vol.29
, pp. 607-614
-
-
Zhang, C.1
Darnell, R.B.2
-
48
-
-
0034612372
-
A brain-enriched polypyrimidine tract-binding protein antagonizes the ability of Nova to regulate neuronspecific alternative splicing
-
Polydorides A.D., Okano H.J., Yang Y.Y.L., Stefani G. and Darnell R.B. (2000) A brain-enriched polypyrimidine tract-binding protein antagonizes the ability of Nova to regulate neuronspecific alternative splicing. Proc. Natl Acad. Sci. USA, 97, 6350-6355
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 6350-6355
-
-
Polydorides, A.D.1
Okano, H.J.2
Yang, Y.Y.L.3
Stefani, G.4
Darnell, R.B.5
-
49
-
-
33745207758
-
Comparative analysis identifies exonic splicing regulatory sequencesthe complex definition of enhancers and silencers
-
Goren A., Ram O., Amit M., Keren H., Lev-Maor G., Vig I., Pupko T. and Ast G. (2006) Comparative analysis identifies exonic splicing regulatory sequences-The complex definition of enhancers and silencers. Mol. Cell, 22, 769-781
-
(2006)
Mol. Cell
, vol.22
, pp. 769-781
-
-
Goren, A.1
Ram, O.2
Amit, M.3
Keren, H.4
Lev-Maor, G.5
Vig, I.6
Pupko, T.7
Ast, G.8
-
50
-
-
80051562607
-
Quantitative evaluation of all hexamers as exonic splicing elements
-
Ke S., Shang S., Kalachikov S.M., Morozova I., Yu L., Russo J.J., Ju J. and Chasin L.A. (2011) Quantitative evaluation of all hexamers as exonic splicing elements. Genome Res., 21, 1360-1374
-
(2011)
Genome Res
, vol.21
, pp. 1360-1374
-
-
Ke, S.1
Shang, S.2
Kalachikov, S.M.3
Morozova, I.4
Yu, L.5
Russo, J.J.6
Ju, J.7
Chasin, L.A.8
-
51
-
-
33847693938
-
Genome-wide identification of functionally distinct subsets of cellular mRNAs associated with two nucleocytoplasmic-shuttling mammalian splicing factors
-
Gama-Carvalho M., Barbosa-Morais N., Brodsky A., Silver P. and Carmo-Fonseca M. (2006) Genome-wide identification of functionally distinct subsets of cellular mRNAs associated with two nucleocytoplasmic-shuttling mammalian splicing factors. Genome Biol., 7, R113
-
(2006)
Genome Biol
, vol.7
-
-
Gama-Carvalho, M.1
Barbosa-Morais, N.2
Brodsky, A.3
Silver, P.4
Carmo-Fonseca, M.5
-
52
-
-
72149117411
-
Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping
-
Xue Y., Zhou Y., Wu T., Zhu T., Ji X., Kwon Y.S., Zhang C., Yeo G., Black D.L., Sun H. et al. (2009) Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping. Mol. Cell, 36, 996-1006
-
(2009)
Mol. Cell
, vol.36
, pp. 996-1006
-
-
Xue, Y.1
Zhou, Y.2
Wu, T.3
Zhu, T.4
Ji, X.5
Kwon, Y.S.6
Zhang, C.7
Yeo, G.8
Black, D.L.9
Sun, H.10
-
53
-
-
64849109747
-
A computational approach for genome-wide mapping of splicing factor binding sites
-
Akerman M., David-Eden H., Pinter R. and Mandel-Gutfreund Y. (2009) A computational approach for genome-wide mapping of splicing factor binding sites. Genome Biol., 10, R30
-
(2009)
Genome Biol
, vol.10
-
-
Akerman, M.1
David-Eden, H.2
Pinter, R.3
Mandel-Gutfreund, Y.4
-
54
-
-
4043156577
-
Searching for statistically significant regulatory modules
-
Bailey T.L. and Noble W.S. (2003) Searching for statistically significant regulatory modules. Bioinformatics, 19, ii16-ii25
-
(2003)
Bioinformatics
, vol.19
-
-
Bailey, T.L.1
Noble, W.S.2
-
55
-
-
41349095526
-
Computation-based discovery of cisregulatory modules by hidden Markov model
-
Wu J. and Xie J. (2008) Computation-based discovery of cisregulatory modules by hidden Markov model. J. Computat. Biol., 15, 279-290
-
(2008)
J. Computat. Biol
, vol.15
, pp. 279-290
-
-
Wu, J.1
Xie, J.2
-
56
-
-
47249131263
-
Coupling hidden Markov models for the discovery of cis-regulatory modules in multiple species
-
Zhou Q. and Wong W.H. (2007) Coupling hidden Markov models for the discovery of cis-regulatory modules in multiple species. Ann. Appl. Stat., 1, 36-65
-
(2007)
Ann. Appl. Stat
, vol.1
, pp. 36-65
-
-
Zhou, Q.1
Wong, W.H.2
-
57
-
-
0037100636
-
Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences
-
Frith M.C., Spouge J.L., Hansen U. and Weng Z. (2002) Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences. Nucleic Acids Res., 30, 3214-3224
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3214-3224
-
-
Frith, M.C.1
Spouge, J.L.2
Hansen, U.3
Weng, Z.4
-
58
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek A., Grun D., Poy M.N., Wolf R., Rosenberg L., Epstein E.J., MacMenamin P., da Piedade I., Gunsalus K.C., Stoffel M. et al. (2005) Combinatorial microRNA target predictions. Nat. Genet., 37, 495-500
-
(2005)
Nat. Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.J.6
MacMenamin, P.7
Da Piedade, I.8
Gunsalus, K.C.9
Stoffel, M.10
-
59
-
-
74949092081
-
Detection of nonneutral substitution rates on mammalian phylogenies
-
Pollard K.S., Hubisz M.J., Rosenbloom K.R. and Siepel A. (2010) Detection of nonneutral substitution rates on mammalian phylogenies. Genome Res., 20, 110-121
-
(2010)
Genome Res
, vol.20
, pp. 110-121
-
-
Pollard, K.S.1
Hubisz, M.J.2
Rosenbloom, K.R.3
Siepel, A.4
-
60
-
-
33644853766
-
Local RNA base pairing probabilities in large sequences
-
Bernhart S.H., Hofacker I.L. and Stadler P.F. (2006) Local RNA base pairing probabilities in large sequences. Bioinformatics, 22, 614-615
-
(2006)
Bioinformatics
, vol.22
, pp. 614-615
-
-
Bernhart, S.H.1
Hofacker, I.L.2
Stadler, P.F.3
-
61
-
-
0024610919
-
A tutorial on hidden markov models and selected applications in speech recognition
-
Rabiner L.R. (1990) A tutorial on hidden markov models and selected applications in speech recognition. Proc. IEEE, 77, 257-286
-
(1990)
Proc. IEEE
, vol.77
, pp. 257-286
-
-
Rabiner, L.R.1
|