메뉴 건너뛰기




Volumn 22, Issue 8, 2013, Pages 1141-1145

Protein-protein alternative binding modes do not overlap

Author keywords

Molecular recognition; Protein association; Protein complexes; Protein docking; Protein structure

Indexed keywords

ARTICLE; BINDING SITE; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE;

EID: 84881290677     PISSN: 09618368     EISSN: 1469896X     Source Type: Journal    
DOI: 10.1002/pro.2295     Document Type: Article
Times cited : (9)

References (28)
  • 1
    • 84878552481 scopus 로고    scopus 로고
    • Low-resolution structural modeling of protein interactome
    • Vakser IA (2013) Low-resolution structural modeling of protein interactome. Curr Opin Struct Biol 23:198-205.
    • (2013) Curr Opin Struct Biol , vol.23 , pp. 198-205
    • Vakser, I.A.1
  • 2
    • 1842507022 scopus 로고    scopus 로고
    • A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications
    • Keskin O, Tsai CJ, Wolfson H, Nussinov R (2004) A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications. Protein Sci 13:1043-1055.
    • (2004) Protein Sci , vol.13 , pp. 1043-1055
    • Keskin, O.1    Tsai, C.J.2    Wolfson, H.3    Nussinov, R.4
  • 4
    • 0026572775 scopus 로고
    • Molecular surface recognition: Determination of geometric fit between proteins and their ligands by correlation techniques
    • Katchalski-Katzir E, Shariv I, Eisenstein M, Friesem AA, Aflalo C, Vakser IA (1992) Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques. Proc Natl Acad Sci USA 89:2195-2199.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 2195-2199
    • Katchalski-Katzir, E.1    Shariv, I.2    Eisenstein, M.3    Friesem, A.A.4    Aflalo, C.5    Vakser, I.A.6
  • 5
    • 0028853544 scopus 로고
    • Principles of protein-protein recognition from structure to thermodynamics
    • Janin J (1995) Principles of protein-protein recognition from structure to thermodynamics. Biochimie 77:497-505.
    • (1995) Biochimie , vol.77 , pp. 497-505
    • Janin, J.1
  • 6
    • 0029822166 scopus 로고    scopus 로고
    • Main-chain complementarity in protein-protein recognition
    • Vakser IA (1996) Main-chain complementarity in protein-protein recognition. Protein Eng 9:741-744.
    • (1996) Protein Eng , vol.9 , pp. 741-744
    • Vakser, I.A.1
  • 7
    • 34248579768 scopus 로고    scopus 로고
    • A simple shape characteristic of protein-protein recognition
    • Nicola G, Vakser IA (2007) A simple shape characteristic of protein-protein recognition. Bioinformatics 23: 789-792.
    • (2007) Bioinformatics , vol.23 , pp. 789-792
    • Nicola, G.1    Vakser, I.A.2
  • 8
    • 28844492648 scopus 로고    scopus 로고
    • Protein surface analysis for function annotation in highthroughput structural genomics pipeline
    • Binkowski TA, Joachimiak A, Liang J (2005) Protein surface analysis for function annotation in highthroughput structural genomics pipeline Protein Sci 14:2972-2981.
    • (2005) Protein Sci , vol.14 , pp. 2972-2981
    • Binkowski, T.A.1    Joachimiak, A.2    Liang, J.3
  • 9
    • 0033587727 scopus 로고    scopus 로고
    • A systematic study of low-resolution recognition in protein-protein complexes
    • Vakser IA, Matar OG, Lam CF (1999) A systematic study of low-resolution recognition in protein-protein complexes. Proc Natl Acad Sci USA 96: 8477-8482.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 8477-8482
    • Vakser, I.A.1    Matar, O.G.2    Lam, C.F.3
  • 10
    • 66149136452 scopus 로고    scopus 로고
    • Shape complementarity of protein-protein complexes at multiple resolutions
    • Zhang Q, Sanner M, Olson AJ (2009) Shape complementarity of protein-protein complexes at multiple resolutions. Proteins 75:453-467.
    • (2009) Proteins , vol.75 , pp. 453-467
    • Zhang, Q.1    Sanner, M.2    Olson, A.J.3
  • 11
    • 0032993447 scopus 로고    scopus 로고
    • Polymer principles and protein folding
    • Dill KA (1999) Polymer principles and protein folding. Protein Sci 8:1166-1180.
    • (1999) Protein Sci , vol.8 , pp. 1166-1180
    • Dill, K.A.1
  • 12
    • 0033056708 scopus 로고    scopus 로고
    • Folding funnels, binding funnels, and protein function
    • Tsai C-J, Kumar S, Ma B, Nussinov R (1999) Folding funnels, binding funnels, and protein function. Protein Sci 8:1181-1190.
    • (1999) Protein Sci , vol.8 , pp. 1181-1190
    • Tsai, C.-J.1    Kumar, S.2    Ma, B.3    Nussinov, R.4
  • 13
    • 0034916879 scopus 로고    scopus 로고
    • How common is the funnel-like energy landscape in protein-protein interactions?
    • Tovchigrechko A, Vakser IA (2001) How common is the funnel-like energy landscape in protein-protein interactions? Protein Sci 10:1572-1583.
    • (2001) Protein Sci , vol.10 , pp. 1572-1583
    • Tovchigrechko, A.1    Vakser, I.A.2
  • 14
    • 84878602247 scopus 로고    scopus 로고
    • Low-resolution recognition factors determine major characteristics of the energy landscape in protein-protein interaction
    • . In: Schreiber G, Nussinov R, Eds.Taylor and Francis, CRC press
    • Vakser IA. Low-resolution recognition factors determine major characteristics of the energy landscape in protein-protein interaction. In: Schreiber G, Nussinov R, Eds. (2009) Computational protein-protein interactions. Taylor and Francis, CRC press, pp. 21-42.
    • (2009) Computational Protein-Protein Interactions , pp. 21-42
    • Vakser, I.A.1
  • 15
    • 44949142137 scopus 로고    scopus 로고
    • The size of the intermolecular energy funnel in protein-protein interactions
    • Hunjan J, Tovchigrechko A, Gao Y, Vakser IA (2008) The size of the intermolecular energy funnel in protein-protein interactions. Proteins 72: 344-352.
    • (2008) Proteins , vol.72 , pp. 344-352
    • Hunjan, J.1    Tovchigrechko, A.2    Gao, Y.3    Vakser, I.A.4
  • 16
    • 40549100400 scopus 로고    scopus 로고
    • Large-scale characteristics of the energy landscape in protein-protein interactions
    • O'Toole N, Vakser IA (2008) Large-scale characteristics of the energy landscape in protein-protein interactions. Proteins 71:144-152.
    • (2008) Proteins , vol.71 , pp. 144-152
    • O'toole, N.1    Vakser, I.A.2
  • 17
    • 79551681222 scopus 로고    scopus 로고
    • Protein binding specificity versus promiscuity
    • Schreiber G, Keating AE (2011) Protein binding specificity versus promiscuity. Curr Opin Struct Biol 21: 50-61.
    • (2011) Curr Opin Struct Biol , vol.21 , pp. 50-61
    • Schreiber, G.1    Keating, A.E.2
  • 18
    • 33646475098 scopus 로고    scopus 로고
    • Divergence of interdomain geometry in two-domain proteins
    • Han JH, Kerrison N, Chothia C, Teichmann SA (2006) Divergence of interdomain geometry in two-domain proteins. Structure 14:935-945.
    • (2006) Structure , vol.14 , pp. 935-945
    • Han, J.H.1    Kerrison, N.2    Chothia, C.3    Teichmann, S.A.4
  • 20
    • 79958064379 scopus 로고    scopus 로고
    • Challenges for the prediction of macromolecular interactions
    • Wass MN, David A, Sternberg MJE (2011) Challenges for the prediction of macromolecular interactions. Curr Opin Struct Biol 21:382-390.
    • (2011) Curr Opin Struct Biol , vol.21 , pp. 382-390
    • Wass, M.N.1    David, A.2    Mje, S.3
  • 22
    • 69249158062 scopus 로고    scopus 로고
    • Computational design of affinity and specificity at protein-protein interfaces
    • Karanicolas J, Kuhlman B (2009) Computational design of affinity and specificity at protein-protein interfaces. Curr Opin Struct Biol 19:458-463.
    • (2009) Curr Opin Struct Biol , vol.19 , pp. 458-463
    • Karanicolas, J.1    Kuhlman, B.2
  • 23
    • 0026598960 scopus 로고
    • Human growth hormone and extracellular domain of its receptor: Crystal structure of the complex
    • De Vos AM, Ultsch M, Kossiakoff AA (1992) Human growth hormone and extracellular domain of its receptor: crystal structure of the complex. Science 255:306-312.
    • (1992) Science , vol.255 , pp. 306-312
    • De Vos, A.M.1    Ultsch, M.2    Kossiakoff, A.A.3
  • 24
    • 77957959671 scopus 로고    scopus 로고
    • Docking by structural similarity at protein-protein interfaces
    • Sinha R, Kundrotas PJ, Vakser IA (2010) Docking by structural similarity at protein-protein interfaces. Proteins 78:3235-3241.
    • (2010) Proteins , vol.78 , pp. 3235-3241
    • Sinha, R.1    Kundrotas, P.J.2    Vakser, I.A.3
  • 25
    • 36749060694 scopus 로고    scopus 로고
    • DOCKGROUND system of databases for protein recognition studies: Unbound structures for docking
    • Gao Y, Douguet D, Tovchigrechko A, Vakser IA (2007) DOCKGROUND system of databases for protein recognition studies: unbound structures for docking. Proteins 69:845-851.
    • (2007) Proteins , vol.69 , pp. 845-851
    • Gao, Y.1    Douguet, D.2    Tovchigrechko, A.3    Vakser, I.A.4
  • 26
    • 17644392830 scopus 로고    scopus 로고
    • TM-align: A protein structure alignment algorithm based on the TM-score
    • Zhang Y, Skolnick J (2005) TM-align: a protein structure alignment algorithm based on the TM-score. Nucleic Acid Res 33:2303-2309.
    • (2005) Nucleic Acid Res , vol.33 , pp. 2303-2309
    • Zhang, Y.1    Skolnick, J.2
  • 27
    • 10344232638 scopus 로고    scopus 로고
    • Scoring function for automated assessment of protein structure template quality
    • Zhang Y, Skolnick J (2004) Scoring function for automated assessment of protein structure template quality. Proteins 57:702-710.
    • (2004) Proteins , vol.57 , pp. 702-710
    • Zhang, Y.1    Skolnick, J.2
  • 28
    • 84862233055 scopus 로고    scopus 로고
    • Templates are available to model nearly all complexes of structurally characterized proteins
    • Kundrotas PJ, Zhu Z, Janin J, Vakser IA (2012) Templates are available to model nearly all complexes of structurally characterized proteins. Proc Natl Acad Sci USA 109:9438-9441.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 9438-9441
    • Kundrotas, P.J.1    Zhu, Z.2    Janin, J.3    Vakser, I.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.