메뉴 건너뛰기




Volumn 71, Issue 1, 2008, Pages 144-152

Large-scale characteristics of the energy landscape in protein-protein interactions

Author keywords

Docking; Protein recognition; Structural bioinformatics; Structure prediction

Indexed keywords

HETERODIMER; HOMODIMER;

EID: 40549100400     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.21665     Document Type: Article
Times cited : (20)

References (26)
  • 1
    • 0032993447 scopus 로고    scopus 로고
    • Polymer principles and protein folding
    • Dill KA. Polymer principles and protein folding. Protein Sci 1999;8:1166-1180.
    • (1999) Protein Sci , vol.8 , pp. 1166-1180
    • Dill, K.A.1
  • 2
    • 0033056708 scopus 로고    scopus 로고
    • Folding funnels, binding funnels, and protein function
    • Tsai C-J, Kumar S, Ma B, Nussinov R. Folding funnels, binding funnels, and protein function. Protein Sci 1999;8:1181-1190.
    • (1999) Protein Sci , vol.8 , pp. 1181-1190
    • Tsai, C.-J.1    Kumar, S.2    Ma, B.3    Nussinov, R.4
  • 3
    • 0034916879 scopus 로고    scopus 로고
    • How common is the funnel-like energy landscape in protein-protein interactions?
    • Tovchigrechko A, Vakser IA. How common is the funnel-like energy landscape in protein-protein interactions? Protein Sci 2001;10:1572-1583.
    • (2001) Protein Sci , vol.10 , pp. 1572-1583
    • Tovchigrechko, A.1    Vakser, I.A.2
  • 6
    • 0029876191 scopus 로고    scopus 로고
    • Long-distance potentials: An approach to the multiple-minima problem in ligand-receptor interaction
    • Vakser IA. Long-distance potentials: an approach to the multiple-minima problem in ligand-receptor interaction. Protein Eng 1996;9:37-41.
    • (1996) Protein Eng , vol.9 , pp. 37-41
    • Vakser, I.A.1
  • 7
    • 0033587727 scopus 로고    scopus 로고
    • A systematic study of low-resolution recognition in protein-protein complexes
    • Vakser IA, Matar OG, Lam CF. A systematic study of low-resolution recognition in protein-protein complexes. Proc Natl Acad Sci USA 1999;96:8477-8482.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 8477-8482
    • Vakser, I.A.1    Matar, O.G.2    Lam, C.F.3
  • 9
    • 0035342450 scopus 로고    scopus 로고
    • Residue frequencies and pairing preferences at protein-protein interfaces
    • Glaser F, Steinberg D, Vakser IA, Ben-Tal N. Residue frequencies and pairing preferences at protein-protein interfaces. Proteins 2001;43:89-102.
    • (2001) Proteins , vol.43 , pp. 89-102
    • Glaser, F.1    Steinberg, D.2    Vakser, I.A.3    Ben-Tal, N.4
  • 10
    • 21644458085 scopus 로고    scopus 로고
    • Development and testing of an automated approach to protein docking
    • Tovchigrechko A, Vakser IA. Development and testing of an automated approach to protein docking. Proteins 2005;60:296-301.
    • (2005) Proteins , vol.60 , pp. 296-301
    • Tovchigrechko, A.1    Vakser, I.A.2
  • 11
    • 33747840389 scopus 로고    scopus 로고
    • GRAMM-X public web server for protein-protein docking
    • Tovchigrechko A, Vakser IA. GRAMM-X public web server for protein-protein docking. Nucleic Acids Res 2006;34:W310-W314.
    • (2006) Nucleic Acids Res , vol.34
    • Tovchigrechko, A.1    Vakser, I.A.2
  • 12
    • 0037346726 scopus 로고    scopus 로고
    • The physics and bioinformatics of binding and folding-an energy landscape perspective
    • Papoian GA, Wolynes PG. The physics and bioinformatics of binding and folding-an energy landscape perspective. Biopolymers 2003;68:333-349.
    • (2003) Biopolymers , vol.68 , pp. 333-349
    • Papoian, G.A.1    Wolynes, P.G.2
  • 13
    • 0026572775 scopus 로고
    • Molecular surface recognition: Determination of geometric fit between proteins and their ligands by correlation techniques
    • Katchalski-Katzir E, Shariv I, Eisenstein M, Friesem AA, Aflalo C, Vakser IA. Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques. Proc Natl Acad Sci USA 1992;89:2195-2199.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 2195-2199
    • Katchalski-Katzir, E.1    Shariv, I.2    Eisenstein, M.3    Friesem, A.A.4    Aflalo, C.5    Vakser, I.A.6
  • 14
    • 0028575449 scopus 로고
    • Hydrophobic docking: A proposed enhancement to molecular recognition techniques
    • Vakser IA, Aflalo C. Hydrophobic docking: a proposed enhancement to molecular recognition techniques. Proteins 1994;20:320-329.
    • (1994) Proteins , vol.20 , pp. 320-329
    • Vakser, I.A.1    Aflalo, C.2
  • 15
    • 0028984540 scopus 로고
    • Protein docking for low-resolution structures
    • Vakser IA. Protein docking for low-resolution structures. Protein Eng 1995;8:371-377.
    • (1995) Protein Eng , vol.8 , pp. 371-377
    • Vakser, I.A.1
  • 16
    • 0030248996 scopus 로고    scopus 로고
    • Low-resolution docking: Prediction of complexes for underdetermined structures
    • Vakser IA. Low-resolution docking: prediction of complexes for underdetermined structures. Biopolymers 1996;39:455-464.
    • (1996) Biopolymers , vol.39 , pp. 455-464
    • Vakser, I.A.1
  • 18
    • 0018165127 scopus 로고
    • Computer analysis of protein-protein interactions
    • Wodak SJ, Janin J. Computer analysis of protein-protein interactions. J Mol Biol 1978;124:323-342.
    • (1978) J Mol Biol , vol.124 , pp. 323-342
    • Wodak, S.J.1    Janin, J.2
  • 19
    • 1242270553 scopus 로고    scopus 로고
    • Protein-protein docking: Is the glass half-full or half-empty?
    • Vajda S, Camacho CJ. Protein-protein docking: is the glass half-full or half-empty? Trends Biotechnol 2004;22:110-116.
    • (2004) Trends Biotechnol , vol.22 , pp. 110-116
    • Vajda, S.1    Camacho, C.J.2
  • 20
    • 0029822166 scopus 로고    scopus 로고
    • Main-chain complementarity in protein-protein recognition
    • Vakser IA. Main-chain complementarity in protein-protein recognition. Protein Eng 1996;9:741-744.
    • (1996) Protein Eng , vol.9 , pp. 741-744
    • Vakser, I.A.1
  • 21
    • 0042844593 scopus 로고    scopus 로고
    • The role of geometric complementarity in secondary structure packing: A systematic docking study
    • Jiang S, Tovchigrechko A, Vakser IA. The role of geometric complementarity in secondary structure packing: a systematic docking study. Protein Sci 2003;12:1646-1651.
    • (2003) Protein Sci , vol.12 , pp. 1646-1651
    • Jiang, S.1    Tovchigrechko, A.2    Vakser, I.A.3
  • 22
    • 13244262600 scopus 로고    scopus 로고
    • Assessing predictions of protein-protein interaction: The CAPRI experiment
    • Janin J. Assessing predictions of protein-protein interaction: the CAPRI experiment. Protein Sci 2005;14:278-283.
    • (2005) Protein Sci , vol.14 , pp. 278-283
    • Janin, J.1
  • 23
    • 21644469377 scopus 로고    scopus 로고
    • Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures
    • Mendez R, Leplae R, Lensink MF, Wodak SJ. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures. Proteins 2005;60:150-169.
    • (2005) Proteins , vol.60 , pp. 150-169
    • Mendez, R.1    Leplae, R.2    Lensink, M.F.3    Wodak, S.J.4
  • 24
    • 33646472024 scopus 로고    scopus 로고
    • High-resolution protein-protein docking
    • Gray JJ. High-resolution protein-protein docking. Curr Opin Struct Biol 2006;16:183-193.
    • (2006) Curr Opin Struct Biol , vol.16 , pp. 183-193
    • Gray, J.J.1
  • 26
    • 33644550021 scopus 로고    scopus 로고
    • Structural systems biology: Modelling protein interactions
    • Aloy P, Russell RB. Structural systems biology: modelling protein interactions. Nature Rev Mol Cell Biol 2006;7:188-197.
    • (2006) Nature Rev Mol Cell Biol , vol.7 , pp. 188-197
    • Aloy, P.1    Russell, R.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.