-
1
-
-
0042386609
-
The relationship between sequence and interaction divergence in proteins
-
Aloy P., Ceulemans H., Stark A., and Russell R.B. The relationship between sequence and interaction divergence in proteins. J. Mol. Biol. 332 (2003) 989-998
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 989-998
-
-
Aloy, P.1
Ceulemans, H.2
Stark, A.3
Russell, R.B.4
-
2
-
-
0035816218
-
Domain combinations in archaeal, eubacterial and eukaryotic proteomes
-
Apic G., Gough J., and Teichmann S.A. Domain combinations in archaeal, eubacterial and eukaryotic proteomes. J. Mol. Biol. 310 (2001) 311-325
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 311-325
-
-
Apic, G.1
Gough, J.2
Teichmann, S.A.3
-
3
-
-
1042275583
-
A dissection of specific and non-specific protein-protein interfaces
-
Bahadur R.P., Chakrabarti P., Rodier F., and Janin J. A dissection of specific and non-specific protein-protein interfaces. J. Mol. Biol. 336 (2004) 943-955
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 943-955
-
-
Bahadur, R.P.1
Chakrabarti, P.2
Rodier, F.3
Janin, J.4
-
4
-
-
0036307754
-
The geometry of domain combination in proteins
-
Bashton M., and Chothia C. The geometry of domain combination in proteins. J. Mol. Biol. 315 (2002) 927-939
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 927-939
-
-
Bashton, M.1
Chothia, C.2
-
5
-
-
0033977581
-
The ASTRAL compendium for protein structure and sequence analysis
-
Brenner S.E., Koehl P., and Levitt M. The ASTRAL compendium for protein structure and sequence analysis. Nucleic Acids Res. 28 (2000) 254-256
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 254-256
-
-
Brenner, S.E.1
Koehl, P.2
Levitt, M.3
-
6
-
-
21644440105
-
Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI
-
Carter P., Lesk V.I., Islam S.A., and Sternberg M.J. Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI. Proteins 60 (2005) 281-288
-
(2005)
Proteins
, vol.60
, pp. 281-288
-
-
Carter, P.1
Lesk, V.I.2
Islam, S.A.3
Sternberg, M.J.4
-
7
-
-
0016708122
-
Principles of protein-protein recognition
-
Chothia C., and Janin J. Principles of protein-protein recognition. Nature 256 (1975) 705-708
-
(1975)
Nature
, vol.256
, pp. 705-708
-
-
Chothia, C.1
Janin, J.2
-
8
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
Chothia C., and Lesk A.M. The relation between the divergence of sequence and structure in proteins. EMBO J. 5 (1986) 823-826
-
(1986)
EMBO J.
, vol.5
, pp. 823-826
-
-
Chothia, C.1
Lesk, A.M.2
-
9
-
-
0035839498
-
Oxygen access to the active site of cholesterol oxidase through a narrow channel is gated by an Arg-Glu pair
-
Coulombe R., Yue K.Q., Ghisla S., and Vrielink A. Oxygen access to the active site of cholesterol oxidase through a narrow channel is gated by an Arg-Glu pair. J. Biol. Chem. 276 (2001) 30435-30441
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 30435-30441
-
-
Coulombe, R.1
Yue, K.Q.2
Ghisla, S.3
Vrielink, A.4
-
10
-
-
0034645779
-
Structures of the flavocytochrome p-cresol methylhydroxylase and its enzyme-substrate complex: gated substrate entry and proton relays support the proposed catalytic mechanism
-
Cunane L.M., Chen Z.W., Shamala N., Mathews F.S., Cronin C.N., and McIntire W.S. Structures of the flavocytochrome p-cresol methylhydroxylase and its enzyme-substrate complex: gated substrate entry and proton relays support the proposed catalytic mechanism. J. Mol. Biol. 295 (2000) 357-374
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 357-374
-
-
Cunane, L.M.1
Chen, Z.W.2
Shamala, N.3
Mathews, F.S.4
Cronin, C.N.5
McIntire, W.S.6
-
11
-
-
0036178630
-
The crystal structure of human tyrosyl-DNA phosphodiesterase, Tdp1
-
Davies D.R., Interthal H., Champoux J.J., and Hol W.G. The crystal structure of human tyrosyl-DNA phosphodiesterase, Tdp1. Structure 10 (2002) 237-248
-
(2002)
Structure
, vol.10
, pp. 237-248
-
-
Davies, D.R.1
Interthal, H.2
Champoux, J.J.3
Hol, W.G.4
-
12
-
-
0038275890
-
Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement
-
Gao H., Sengupta J., Valle M., Korostelev A., Eswar N., Stagg S.M., Van Roey P., Agrawal R.K., Harvey S.C., Sali A., et al. Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement. Cell 113 (2003) 789-801
-
(2003)
Cell
, vol.113
, pp. 789-801
-
-
Gao, H.1
Sengupta, J.2
Valle, M.3
Korostelev, A.4
Eswar, N.5
Stagg, S.M.6
Van Roey, P.7
Agrawal, R.K.8
Harvey, S.C.9
Sali, A.10
-
13
-
-
0027528934
-
Domain closure in adenylate kinase. Joints on either side of two helices close like neighboring fingers
-
Gerstein M., Schulz G., and Chothia C. Domain closure in adenylate kinase. Joints on either side of two helices close like neighboring fingers. J. Mol. Biol. 229 (1993) 494-501
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 494-501
-
-
Gerstein, M.1
Schulz, G.2
Chothia, C.3
-
14
-
-
0028335096
-
Structural mechanisms for domain movements in proteins
-
Gerstein M., Lesk A.M., and Chothia C. Structural mechanisms for domain movements in proteins. Biochemistry 33 (1994) 6739-6749
-
(1994)
Biochemistry
, vol.33
, pp. 6739-6749
-
-
Gerstein, M.1
Lesk, A.M.2
Chothia, C.3
-
15
-
-
17544367678
-
Convergent evolution of domain architectures (is rare)
-
Gough J. Convergent evolution of domain architectures (is rare). Bioinformatics 21 (2005) 1464-1471
-
(2005)
Bioinformatics
, vol.21
, pp. 1464-1471
-
-
Gough, J.1
-
16
-
-
2942589291
-
The linked conservation of structure and function in a family of high diversity: the monomeric cupredoxins
-
Gough J., and Chothia C. The linked conservation of structure and function in a family of high diversity: the monomeric cupredoxins. Structure 12 (2004) 917-925
-
(2004)
Structure
, vol.12
, pp. 917-925
-
-
Gough, J.1
Chothia, C.2
-
17
-
-
0034060520
-
Protein domain interfaces: characterization and comparison with oligomeric protein interfaces
-
Jones S., Marin A., and Thornton J.M. Protein domain interfaces: characterization and comparison with oligomeric protein interfaces. Protein Eng. 13 (2000) 77-82
-
(2000)
Protein Eng.
, vol.13
, pp. 77-82
-
-
Jones, S.1
Marin, A.2
Thornton, J.M.3
-
18
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel E., and Henrick K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D Biol. Crystallogr. 60 (2004) 2256-2268
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
19
-
-
0034660230
-
The first crystal structure of a phospholipase D
-
Leiros I., Secundo F., Zambonelli C., Servi S., and Hough E. The first crystal structure of a phospholipase D. Structure 8 (2000) 655-667
-
(2000)
Structure
, vol.8
, pp. 655-667
-
-
Leiros, I.1
Secundo, F.2
Zambonelli, C.3
Servi, S.4
Hough, E.5
-
20
-
-
0001933882
-
Integrated access to sequence and structural data
-
Saccone C. (Ed), EEC, Bruxelles, Belgium
-
Lesk A.M. Integrated access to sequence and structural data. In: Saccone C. (Ed). Biosequences: perspectives and user services in Europe (1986), EEC, Bruxelles, Belgium 23-28
-
(1986)
Biosequences: perspectives and user services in Europe
, pp. 23-28
-
-
Lesk, A.M.1
-
21
-
-
0019332167
-
How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins
-
Lesk A.M., and Chothia C. How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins. J. Mol. Biol. 136 (1980) 225-270
-
(1980)
J. Mol. Biol.
, vol.136
, pp. 225-270
-
-
Lesk, A.M.1
Chothia, C.2
-
22
-
-
12144281353
-
Conservation of orientation and sequence in protein domain-domain interactions
-
Littler S.J., and Hubbard S.J. Conservation of orientation and sequence in protein domain-domain interactions. J. Mol. Biol. 345 (2005) 1265-1279
-
(2005)
J. Mol. Biol.
, vol.345
, pp. 1265-1279
-
-
Littler, S.J.1
Hubbard, S.J.2
-
23
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
Lo Conte L., Chothia C., and Janin J. The atomic structure of protein-protein recognition sites. J. Mol. Biol. 285 (1999) 2177-2198
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2177-2198
-
-
Lo Conte, L.1
Chothia, C.2
Janin, J.3
-
24
-
-
0028961335
-
SCOP: a structural classification of proteins database for the investigation of sequences and structures
-
Murzin A.G., Brenner S.E., Hubbard T., and Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247 (1995) 536-540
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
25
-
-
0037013921
-
Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase
-
Newberry K.J., Hou Y.M., and Perona J.J. Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase. EMBO J. 21 (2002) 2778-2787
-
(2002)
EMBO J.
, vol.21
, pp. 2778-2787
-
-
Newberry, K.J.1
Hou, Y.M.2
Perona, J.J.3
-
26
-
-
2942582560
-
A structural perspective on protein-protein interactions
-
Russell R.B., Alber F., Aloy P., Davis F.P., Korkin D., Pichaud M., Topf M., and Sali A. A structural perspective on protein-protein interactions. Curr. Opin. Struct. Biol. 14 (2004) 313-324
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 313-324
-
-
Russell, R.B.1
Alber, F.2
Aloy, P.3
Davis, F.P.4
Korkin, D.5
Pichaud, M.6
Topf, M.7
Sali, A.8
-
27
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov I.N., and Bourne P.E. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng. 11 (1998) 739-747
-
(1998)
Protein Eng.
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
28
-
-
0034651315
-
The 2.0 Å crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules
-
Sugiura I., Nureki O., Ugaji-Yoshikawa Y., Kuwabara S., Shimada A., Tateno M., Lorber B., Giege R., Moras D., Yokoyama S., and Konno M. The 2.0 Å crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules. Structure 8 (2000) 197-208
-
(2000)
Structure
, vol.8
, pp. 197-208
-
-
Sugiura, I.1
Nureki, O.2
Ugaji-Yoshikawa, Y.3
Kuwabara, S.4
Shimada, A.5
Tateno, M.6
Lorber, B.7
Giege, R.8
Moras, D.9
Yokoyama, S.10
Konno, M.11
-
29
-
-
0032424307
-
Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements
-
Teichmann S.A., Park J., and Chothia C. Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements. Proc. Natl. Acad. Sci. USA 95 (1998) 14658-14663
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14658-14663
-
-
Teichmann, S.A.1
Park, J.2
Chothia, C.3
-
30
-
-
0033516705
-
The packing density in proteins: standard radii and volumes
-
Tsai J., Taylor R., Chothia C., and Gerstein M. The packing density in proteins: standard radii and volumes. J. Mol. Biol. 290 (1999) 253-266
-
(1999)
J. Mol. Biol.
, vol.290
, pp. 253-266
-
-
Tsai, J.1
Taylor, R.2
Chothia, C.3
Gerstein, M.4
-
31
-
-
0037388850
-
A HEX-1 crystal lattice required for Woronin body function in Neurospora crassa
-
Yuan P., Jedd G., Kumaran D., Swaminathan S., Shio H., Hewitt D., Chua N.H., and Swaminathan K. A HEX-1 crystal lattice required for Woronin body function in Neurospora crassa. Nat. Struct. Biol. 10 (2003) 264-270
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 264-270
-
-
Yuan, P.1
Jedd, G.2
Kumaran, D.3
Swaminathan, S.4
Shio, H.5
Hewitt, D.6
Chua, N.H.7
Swaminathan, K.8
|