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Volumn 22, Issue 21, 2006, Pages 2612-2618

Dockground resource for studying protein-protein interfaces

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ANALYTIC METHOD; ARTICLE; AUTOMATION; COMPLEX FORMATION; CONTROLLED STUDY; CRYSTAL STRUCTURE; EXPERIMENTAL DESIGN; MOLECULAR BIOLOGY; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROCESS MODEL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; SEQUENCE DATABASE; VALIDATION PROCESS;

EID: 33750406198     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl447     Document Type: Article
Times cited : (72)

References (31)
  • 1
    • 1042275583 scopus 로고    scopus 로고
    • A dissection of specific and non-specific protein-protein interfaces
    • Bahadur,R.P. et al. (2004) A dissection of specific and non-specific protein-protein interfaces. J. Mol. Biol., 336, 943-955.
    • (2004) J. Mol. Biol. , vol.336 , pp. 943-955
    • Bahadur, R.P.1
  • 2
    • 0032479179 scopus 로고    scopus 로고
    • Anatomy of hot spots in protein interfaces
    • Bogan,A.A. and Thorn,K.S. (1998) Anatomy of hot spots in protein interfaces. J. Mol. Biol., 280, 1-9.
    • (1998) J. Mol. Biol. , vol.280 , pp. 1-9
    • Bogan, A.A.1    Thorn, K.S.2
  • 3
    • 0033977581 scopus 로고    scopus 로고
    • The ASTRAL compendium for protein structure and sequence analysis
    • Brenner,S.E. et al. (2000) The ASTRAL compendium for protein structure and sequence analysis. Nucleic Acids Res., 28, 254-256.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 254-256
    • Brenner, S.E.1
  • 4
    • 0030850230 scopus 로고    scopus 로고
    • Protein-protein crystal-packing contacts
    • Carugo,O. and Argos,P. (1997) Protein-protein crystal-packing contacts. Protein Sci., 6, 2261-2263.
    • (1997) Protein Sci. , vol.6 , pp. 2261-2263
    • Carugo, O.1    Argos, P.2
  • 5
    • 0030877077 scopus 로고    scopus 로고
    • Extent and nature of contacts between protein molecules in crystal lattices and between subunits of protein oligomers
    • Dasgupta,S. et al. (1997) Extent and nature of contacts between protein molecules in crystal lattices and between subunits of protein oligomers. Proteins, 28, 494-514.
    • (1997) Proteins , vol.28 , pp. 494-514
    • Dasgupta, S.1
  • 6
    • 0034843745 scopus 로고    scopus 로고
    • Easier threading through web-based comparisons and cross-validations
    • Douguet,D. and Labesse,G. (2001) Easier threading through web-based comparisons and cross-validations. Bioinformatics, 17, 752-753.
    • (2001) Bioinformatics , vol.17 , pp. 752-753
    • Douguet, D.1    Labesse, G.2
  • 8
    • 0035342450 scopus 로고    scopus 로고
    • Residue frequencies and pairing preferences at protein-protein interfaces
    • Glaser,F. et al. (2001) Residue frequencies and pairing preferences at protein-protein interfaces. Proteins, 43, 89-102.
    • (2001) Proteins , vol.43 , pp. 89-102
    • Glaser, F.1
  • 9
    • 0032169688 scopus 로고    scopus 로고
    • PQS: A protein quaternary structure file server
    • Henrick,K. and Thornton,J.M. (1998) PQS: A protein quaternary structure file server. Trends Biochem. Sci., 23, 358-361.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 358-361
    • Henrick, K.1    Thornton, J.M.2
  • 10
    • 0030792253 scopus 로고    scopus 로고
    • SCOP: A structural classification of proteins database
    • Hubbard,T.J. et al. (1997) SCOP: A structural classification of proteins database. Nucleic Acids Res., 25, 236-239.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 236-239
    • Hubbard, T.J.1
  • 11
    • 0031297461 scopus 로고    scopus 로고
    • Specific versus non-specific contacts in protein crystals
    • Janin,J. (1997) Specific versus non-specific contacts in protein crystals. Nat. Struct. Biol., 4, 973-974.
    • (1997) Nat. Struct. Biol. , vol.4 , pp. 973-974
    • Janin, J.1
  • 12
    • 0029586759 scopus 로고
    • Protein-protein interaction at crystal contacts
    • Janin,J. and Rodier,F. (1995) Protein-protein interaction at crystal contacts. Proteins, 23, 580-587.
    • (1995) Proteins , vol.23 , pp. 580-587
    • Janin, J.1    Rodier, F.2
  • 13
    • 0030028728 scopus 로고    scopus 로고
    • Principles of protein-protein interactions
    • Jones,S. and Thornton,J.M. (1996) Principles of protein-protein interactions. Proc. Natl Acad. Sci. USA, 93, 13-20.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 13-20
    • Jones, S.1    Thornton, J.M.2
  • 14
    • 0031678069 scopus 로고    scopus 로고
    • Empirical solvent-mediated potentials hold for both intramolecular and inter-molecular inter-residue interactions
    • Keskin,O. et al. (1998) Empirical solvent-mediated potentials hold for both intramolecular and inter-molecular inter-residue interactions. Protein Sci., 7, 2578-2586.
    • (1998) Protein Sci. , vol.7 , pp. 2578-2586
    • Keskin, O.1
  • 15
    • 1842507022 scopus 로고    scopus 로고
    • A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications
    • Keskin,O. et al. (2004) A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications. Protein Sci., 13, 1043-1055.
    • (2004) Protein Sci. , vol.13 , pp. 1043-1055
    • Keskin, O.1
  • 16
    • 0032522670 scopus 로고    scopus 로고
    • Morphology of protein-protein interfaces
    • Larsen,T.A. et al. (1998) Morphology of protein-protein interfaces. Structure, 6, 421-427.
    • (1998) Structure , vol.6 , pp. 421-427
    • Larsen, T.A.1
  • 17
    • 0030997363 scopus 로고    scopus 로고
    • Hydrophobic patches on protein subunit interfaces: Charactersitics and prediction
    • Lijnzaad,P. and Argos,P. (1997) Hydrophobic patches on protein subunit interfaces: Charactersitics and prediction. Proteins, 28, 333-343.
    • (1997) Proteins , vol.28 , pp. 333-343
    • Lijnzaad, P.1    Argos, P.2
  • 18
    • 0003187567 scopus 로고    scopus 로고
    • The atomic structure of protein-protein recognition sites
    • Lo Conte,L. et al. (1999) The atomic structure of protein-protein recognition sites. J. Mol. Biol., 285, 2177-2198.
    • (1999) J. Mol. Biol. , vol.285 , pp. 2177-2198
    • Lo Conte, L.1
  • 19
    • 0037340493 scopus 로고    scopus 로고
    • Development of unified statistical potentials describing protein-protein interactions
    • Lu,H. et al. (2003) Development of unified statistical potentials describing protein-protein interactions. Biophys. J., 84, 1895-1901.
    • (2003) Biophys. J. , vol.84 , pp. 1895-1901
    • Lu, H.1
  • 21
    • 0012787398 scopus 로고    scopus 로고
    • SeqHound: Biological sequence and structure database as a platform for bioinformatics research
    • Michalickova,K. et al. (2002) SeqHound: Biological sequence and structure database as a platform for bioinformatics research. BMC Bioinformatics, 3, 32.
    • (2002) BMC Bioinformatics , vol.3 , pp. 32
    • Michalickova, K.1
  • 22
    • 0037250308 scopus 로고    scopus 로고
    • PDB-REPRDB: A database of representative protein chains from the Protein Data Bank (PDB) in 2003
    • Noguchi,T. and Akiyama,Y. (2003) PDB-REPRDB: A database of representative protein chains from the Protein Data Bank (PDB) in 2003. Nucleic Acids Res., 31, 492-493.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 492-493
    • Noguchi, T.1    Akiyama, Y.2
  • 23
    • 0037346726 scopus 로고    scopus 로고
    • The physics and bioinformatics of binding and folding-an energy landscape perspective
    • Papoian,G.A. and Wolynes,P.G. (2003) The physics and bioinformatics of binding and folding-an energy landscape perspective. Biopolymers, 68, 333-349.
    • (2003) Biopolymers , vol.68 , pp. 333-349
    • Papoian, G.A.1    Wolynes, P.G.2
  • 24
    • 0034308172 scopus 로고    scopus 로고
    • Discriminating between homodimeric and monomeric proteins in the crystalline state
    • Ponstingl,H. et al. (2000) Discriminating between homodimeric and monomeric proteins in the crystalline state. Proteins, 41, 47-57.
    • (2000) Proteins , vol.41 , pp. 47-57
    • Ponstingl, H.1
  • 25
    • 2942582560 scopus 로고    scopus 로고
    • A structural perspective on protein-protein interactions
    • Russell,R.B. et al. (2004) A structural perspective on protein-protein interactions. Curr. Opin. Struct. Biol., 14, 313-324.
    • (2004) Curr. Opin. Struct. Biol. , vol.14 , pp. 313-324
    • Russell, R.B.1
  • 26
    • 0034916879 scopus 로고    scopus 로고
    • How common is the funnel-like energy landscape in protein-protein interactions?
    • Tovchigrechko,A. and Vakser,I.A. (2001) How common is the funnel-like energy landscape in protein-protein interactions? Protein Sci., 10, 1572-1583.
    • (2001) Protein Sci. , vol.10 , pp. 1572-1583
    • Tovchigrechko, A.1    Vakser, I.A.2
  • 27
    • 0036073343 scopus 로고    scopus 로고
    • Docking of protein models
    • Tovchigrechko,A. et al. (2002) Docking of protein models. Protein Sci., 11, 1888-1896.
    • (2002) Protein Sci. , vol.11 , pp. 1888-1896
    • Tovchigrechko, A.1
  • 28
    • 0036606367 scopus 로고    scopus 로고
    • Meeting report: Modeling of protein interactions in genomes
    • Vajda,S. et al. (2002) Meeting report: Modeling of protein interactions in genomes. Proteins, 47, 444-446.
    • (2002) Proteins , vol.47 , pp. 444-446
    • Vajda, S.1
  • 29
    • 0033587727 scopus 로고    scopus 로고
    • A systematic study of low-resolution recognition in protein-protein complexes
    • Vakser,I.A. et al. (1999) A systematic study of low-resolution recognition in protein-protein complexes. Proc. Natl Acad. Sci. USA, 96, 8477-8482.
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 8477-8482
    • Vakser, I.A.1
  • 30
    • 0043180474 scopus 로고    scopus 로고
    • PISCES: A protein sequence culling server
    • Wang,G. and Dunbrack,R.L. (2003) PISCES: A protein sequence culling server. Bioinformatics, 19, 1589-1591.
    • (2003) Bioinformatics , vol.19 , pp. 1589-1591
    • Wang, G.1    Dunbrack, R.L.2
  • 31
    • 18444373540 scopus 로고    scopus 로고
    • The Protein Data Bank: Unifying the archive
    • Westbrook,J. et al. (2002) The Protein Data Bank: Unifying the archive. Nucleic Acids Res., 30, 245-248.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 245-248
    • Westbrook, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.