-
1
-
-
0031016272
-
The structure of a domain common to archaebacteria and the homocystinuria disease protein
-
Bateman, A. 1997. The structure of a domain common to archaebacteria and the homocystinuria disease protein. Trends Biochem. Sci. 22: 12-13.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 12-13
-
-
Bateman, A.1
-
2
-
-
0036616218
-
The Protein Data Bank
-
Berman, H.M., Battistuz, T., Bhat, T.N., Bluhm, W.F., Bourne, P.E., Burkhardt, K., Feng, Z., Gilliland, G.L., Iype, L., Jain, S., et al. 2002. The Protein Data Bank. Acta Crystallogr. D Biol. Crystallogr. 58: 899-907.
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 899-907
-
-
Berman, H.M.1
Battistuz, T.2
Bhat, T.N.3
Bluhm, W.F.4
Bourne, P.E.5
Burkhardt, K.6
Feng, Z.7
Gilliland, G.L.8
Iype, L.9
Jain, S.10
-
3
-
-
0042890523
-
Inferring functional relationships of proteins from local sequence and spatial surface patterns
-
Binkowski, T.A., Adamian, L., and Liang, J. 2003a. Inferring functional relationships of proteins from local sequence and spatial surface patterns. J. Mol. Biol. 332: 505-526.
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 505-526
-
-
Binkowski, T.A.1
Adamian, L.2
Liang, J.3
-
4
-
-
0041989751
-
CASTp: Computed atlas of surface topography of proteins
-
Binkowski, T.A., Naghibzadeh, S., and Liang, J. 2003b. CASTp: Computed atlas of surface topography of proteins. Nucleic Acids Res. 31: 3352-3355.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3352-3355
-
-
Binkowski, T.A.1
Naghibzadeh, S.2
Liang, J.3
-
5
-
-
3242883091
-
pvSOAR: Detecting similar surface patterns of pocket and void surfaces of amino acid residues on proteins
-
Binkowski, T.A., Freeman, P., and Liang, J. 2004. pvSOAR: Detecting similar surface patterns of pocket and void surfaces of amino acid residues on proteins. Nucleic Acids Res. 32: W555-W558.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Binkowski, T.A.1
Freeman, P.2
Liang, J.3
-
7
-
-
0035782660
-
Enhanced functional annotation of protein sequences via the use of structural descriptors
-
Di Gennaro, J.A., Siew, N., Hoffman, B.T., Zhang, L., Skolnick, J., Neilson, L.I., and Fetrow, J.S. 2001. Enhanced functional annotation of protein sequences via the use of structural descriptors. J. Struct. Biol. 134: 232-245.
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 232-245
-
-
Di Gennaro, J.A.1
Siew, N.2
Hoffman, B.T.3
Zhang, L.4
Skolnick, J.5
Neilson, L.I.6
Fetrow, J.S.7
-
8
-
-
0030334647
-
Optimum superimposition of protein structures: Ambiguities and implications
-
Feng, Z.K. and Sippl, M.J. 1996. Optimum superimposition of protein structures: Ambiguities and implications. Fold. Des. 1: 123-132.
-
(1996)
Fold. Des.
, vol.1
, pp. 123-132
-
-
Feng, Z.K.1
Sippl, M.J.2
-
9
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff, S. and Henikoff, J.G. 1992. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. 89: 10915-10919.
-
(1992)
Proc. Natl. Acad. Sci.
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
10
-
-
0028205447
-
Enlarged representative set of protein structures
-
Hobohm, U. and Sander, C. 1994. Enlarged representative set of protein structures. Protein Sci. 3: 522-524.
-
(1994)
Protein Sci.
, vol.3
, pp. 522-524
-
-
Hobohm, U.1
Sander, C.2
-
11
-
-
0028892387
-
Structural analysis of zinc substitutions in the active site of thermolysin
-
Holland, D.R., Hausrath, A.C., Juers, D., and Matthews, B.W. 1995. Structural analysis of zinc substitutions in the active site of thermolysin. Protein Sci. 4: 1955-1965.
-
(1995)
Protein Sci.
, vol.4
, pp. 1955-1965
-
-
Holland, D.R.1
Hausrath, A.C.2
Juers, D.3
Matthews, B.W.4
-
12
-
-
0028232955
-
Searching protein structure databases has come of age
-
Holm, L. and Sander, C. 1994. Searching protein structure databases has come of age. Proteins 19: 165-173.
-
(1994)
Proteins
, vol.19
, pp. 165-173
-
-
Holm, L.1
Sander, C.2
-
13
-
-
0034564272
-
Search for a new description of protein topology and local structure
-
Jaroszewski, L. and Godzik, A. 2000. Search for a new description of protein topology and local structure. Proc. Int. Conf. Intell. Syst. Mol. Biol. 8: 211-217.
-
(2000)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.8
, pp. 211-217
-
-
Jaroszewski, L.1
Godzik, A.2
-
14
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A.G., Brenner, S.E., Hubbard, T., and Chothia, C. 1995. SCOP: A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247: 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
15
-
-
0032926060
-
The CATH database provides insights into protein structure/function relationships
-
Orengo, C.A., Pearl, F.M., Bray, J.E., Todd, A.E., Martin, A.C., Lo Conte, L., and Thornton, J.M. 1999a. The CATH database provides insights into protein structure/function relationships. Nucleic Acids Res. 27: 275-279.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 275-279
-
-
Orengo, C.A.1
Pearl, F.M.2
Bray, J.E.3
Todd, A.E.4
Martin, A.C.5
Lo Conte, L.6
Thornton, J.M.7
-
16
-
-
0033150686
-
From protein structure to function
-
Orengo, C.A., Todd, A.E., and Thornton, J.M. 1999b. From protein structure to function. Curr. Opin. Struct. Biol. 9: 374-382.
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 374-382
-
-
Orengo, C.A.1
Todd, A.E.2
Thornton, J.M.3
-
17
-
-
1542396974
-
Mycobacterium tuberculosis ribose-5-phosphate isomerase has a known fold, but a novel active site
-
Roos, A.K., Andersson, C.E., Bergfors, T., Jacobsson, M., Karlen, A., Unge, T., Jones, T.A., and Mowbray, S.L. 2004. Mycobacterium tuberculosis ribose-5-phosphate isomerase has a known fold, but a novel active site. J. Mol. Biol. 335: 799-809.
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 799-809
-
-
Roos, A.K.1
Andersson, C.E.2
Bergfors, T.3
Jacobsson, M.4
Karlen, A.5
Unge, T.6
Jones, T.A.7
Mowbray, S.L.8
-
18
-
-
0036308741
-
Enzyme function less conserved than anticipated
-
Rost, B. 2002. Enzyme function less conserved than anticipated. J. Mol. Biol. 318: 595-608.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 595-608
-
-
Rost, B.1
-
19
-
-
0032568859
-
Detection of protein three-dimensional side-chain patterns: New examples of convergent evolution
-
Russell, R.B. 1998. Detection of protein three-dimensional side-chain patterns: New examples of convergent evolution. J. Mol. Biol. 279: 1211-1227.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 1211-1227
-
-
Russell, R.B.1
-
20
-
-
0032475963
-
Supersites within superfolds. Binding site similarity in the absence of homology
-
Russell, R.B., Sasieni, P.D., and Sternberg, M.J. 1998. Supersites within superfolds. Binding site similarity in the absence of homology. J. Mol. Biol. 282: 903-918.
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 903-918
-
-
Russell, R.B.1
Sasieni, P.D.2
Sternberg, M.J.3
-
21
-
-
0038168191
-
Integrating structure, bioinformatics, and enzymology to discover function: BioH, a new carboxylesterase from Escherichia coli
-
Sanishvili, R., Yakunin, A.F., Laskowski, R.A., Skarina, T., Evdokimova, E., Doherty-Kirby, A., Lajoie, G.A., Thornton, J.M., Arrowsmith, C.H., Savchenko, A., et al. 2003. Integrating structure, bioinformatics, and enzymology to discover function: BioH, a new carboxylesterase from Escherichia coli. J. Biol. Chem. 278: 26039-26045.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 26039-26045
-
-
Sanishvili, R.1
Yakunin, A.F.2
Laskowski, R.A.3
Skarina, T.4
Evdokimova, E.5
Doherty-Kirby, A.6
Lajoie, G.A.7
Thornton, J.M.8
Arrowsmith, C.H.9
Savchenko, A.10
-
22
-
-
85047691317
-
CBS domains form energy-sensing modules whose binding of adenosine ligands is disrupted by disease mutations
-
Scott, J.W., Hawley, S.A., Green, K.A., Anis, M., Stewart, G., Scullion, G.A., Norman, D.G., and Hardie, D.G. 2004. CBS domains form energy-sensing modules whose binding of adenosine ligands is disrupted by disease mutations. J. Clin. Invest. 113: 274-284.
-
(2004)
J. Clin. Invest.
, vol.113
, pp. 274-284
-
-
Scott, J.W.1
Hawley, S.A.2
Green, K.A.3
Anis, M.4
Stewart, G.5
Scullion, G.A.6
Norman, D.G.7
Hardie, D.G.8
-
23
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T.F. and Waterman, M.S. 1981. Identification of common molecular subsequences. J. Mol. Biol. 147: 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
24
-
-
0142106373
-
How well is enzyme function conserved as a function of pairwise sequence identity?
-
Tian, W. and Skolnick, J. 2003. How well is enzyme function conserved as a function of pairwise sequence identity? J. Mol. Biol. 333: 863-882.
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 863-882
-
-
Tian, W.1
Skolnick, J.2
-
25
-
-
0032859140
-
Evolution of protein function, froma structural perspective
-
Todd, A.E., Orengo, C.A., and Thornton, J.M. 1999. Evolution of protein function, froma structural perspective. Curr. Opin. Chem. Biol. 3: 548-556.
-
(1999)
Curr. Opin. Chem. Biol.
, vol.3
, pp. 548-556
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
26
-
-
0037181132
-
Purification and characterisation of the BIOH protein from the biotin biosynthetic pathway
-
Tomczyk, N.H., Nettleship, J.E., Baxter, R.L., Crichton, H.J., Webster, S.P., and Campopiano, D.J. 2002. Purification and characterisation of the BIOH protein from the biotin biosynthetic pathway. FEBS Lett. 513: 299-304.
-
(2002)
FEBS Lett.
, vol.513
, pp. 299-304
-
-
Tomczyk, N.H.1
Nettleship, J.E.2
Baxter, R.L.3
Crichton, H.J.4
Webster, S.P.5
Campopiano, D.J.6
-
27
-
-
0036707544
-
Aminoglycoside 2′-N-acetyltransferase from Mycobacterium tuberculosis in complex with coenzyme A and aminoglycoside substrates
-
Vetting, M.W., Hegde, S.S., Javid-Majd, F., Blanchard, J.S., and Roderick, S.L. 2002. Aminoglycoside 2′-N-acetyltransferase from Mycobacterium tuberculosis in complex with coenzyme A and aminoglycoside substrates. Nat. Struct. Biol. 9: 653-658.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 653-658
-
-
Vetting, M.W.1
Hegde, S.S.2
Javid-Majd, F.3
Blanchard, J.S.4
Roderick, S.L.5
-
28
-
-
0030724039
-
TESS: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites
-
Wallace, A.C., Borkakoti, N., and Thornton, J.M. 1997. TESS: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites. Protein Sci. 6: 2308-2323.
-
(1997)
Protein Sci.
, vol.6
, pp. 2308-2323
-
-
Wallace, A.C.1
Borkakoti, N.2
Thornton, J.M.3
-
29
-
-
0033551092
-
Characteristics and crystal structure of bacterial inosine-5′- monophosphate dehydrogenase
-
Zhang, R., Evans, G., Rotella, F.J., Westbrook, E.M., Beno, D., Huberman, E., Joachimiak, A., and Collart, F.R. 1999. Characteristics and crystal structure of bacterial inosine-5′-monophosphate dehydrogenase. Biochemistry 38: 4691-4700.
-
(1999)
Biochemistry
, vol.38
, pp. 4691-4700
-
-
Zhang, R.1
Evans, G.2
Rotella, F.J.3
Westbrook, E.M.4
Beno, D.5
Huberman, E.6
Joachimiak, A.7
Collart, F.R.8
-
30
-
-
0037224131
-
Structure of Escherichia coli ribose-5-phosphate isomerase: A ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle
-
Zhang, R., Andersson, C.E., Savchenko, A., Skarina, T., Evdokimova, E., Beasley, S., Arrowsmith, C.H., Edwards, A.M., Joachimiak, A., and Mowbray, S.L. 2003a. Structure of Escherichia coli ribose-5-phosphate isomerase: A ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle. Structure (Camb.) 11: 31-42.
-
(2003)
Structure (Camb.)
, vol.11
, pp. 31-42
-
-
Zhang, R.1
Andersson, C.E.2
Savchenko, A.3
Skarina, T.4
Evdokimova, E.5
Beasley, S.6
Arrowsmith, C.H.7
Edwards, A.M.8
Joachimiak, A.9
Mowbray, S.L.10
-
31
-
-
0041384346
-
The 2.2 Å resolution structure of RpiB/AlsB from Escherichia coli illustrates a new approach to the ribose-5-phosphate isomerase reaction
-
Zhang, R.G., Andersson, C.E., Skarina, T., Evdokimova, E., Edwards, A.M., Joachimiak, A., Savchenko, A., and Mowbray, S.L. 2003b. The 2.2 Å resolution structure of RpiB/AlsB from Escherichia coli illustrates a new approach to the ribose-5-phosphate isomerase reaction. J. Mol. Biol. 332: 1083-1094.
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 1083-1094
-
-
Zhang, R.G.1
Andersson, C.E.2
Skarina, T.3
Evdokimova, E.4
Edwards, A.M.5
Joachimiak, A.6
Savchenko, A.7
Mowbray, S.L.8
-
32
-
-
0037403053
-
Conserved protein YecM from Escherichia coli shows structural homology to metal-binding isomerases and oxygenases
-
Zhang, R.G., Duke, N., Laskowski, R., Evdokimova, E., Skarina, T., Edwards, A., Joachimiak, A., and Savchenko, A. 2003c. Conserved protein YecM from Escherichia coli shows structural homology to metal-binding isomerases and oxygenases. Proteins 51: 311-314.
-
(2003)
Proteins
, vol.51
, pp. 311-314
-
-
Zhang, R.G.1
Duke, N.2
Laskowski, R.3
Evdokimova, E.4
Skarina, T.5
Edwards, A.6
Joachimiak, A.7
Savchenko, A.8
|