A systematic study of low-resolution recognition in protein-protein complexes

Proceedings of the National Academy of Sciences of the United States of America

Volumn 96, Issue 15, 1999, Pages 8477-8482

  Vakser, Ilya A ^a   Matar, Omar G ^b   Lam, Chan F ^b  

^a MEDICAL UNIVERSITY OF SOUTH CAROLINA   (United States)

^b MEDICAL UNIVERSITY OF SOUTH CAROLINA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOCKING PROTEIN;

ARTICLE; COMPUTER MODEL; COMPUTER PROGRAM; DATA BASE; GEOMETRY; MATHEMATICAL ANALYSIS; MOLECULAR INTERACTION; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN PROTEIN INTERACTION;

ALGORITHMS; BINDING SITES; CRYSTALLIZATION; DATABASES; FOURIER ANALYSIS; LIGANDS; MODELS, MOLECULAR; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; PROTEINS; RECEPTORS, CELL SURFACE;

RUMEX;

EID: 0033587727     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.96.15.8477     Document Type: Article

References (38)

1. Vakser, I. A. (1995) Protein Eng. 8, 371-377.
2. Vakser, I. A. (1996) Biopolymers 39, 455-464.
3. Vakser, I. A. (1996) Protein Eng. 9, 741-744.
4. Novotny, J., Handschumacher, M., Haber, E., Bruccoleri, R. E., Carlson, W. B., Fanning, D. W., Smith, J. A. & Rose, G. D. (1986) Proc. Natl. Acad. Sci. USA 83, 226-230.
5. Laskowski, R. A., Luscombe, N. M., Swindells, M. B. & Thornton, J. M. (1996) Protein Sci. 5, 2438-2452.
6. Peters, K. P., Fauck, J. & Frommel, C. (1996) J. Mol. Biol. 256, 201-213.
7. Ho, C. M. W. & Marshall, G. R. (1990) J. Comput. Aided Mol. Des. 4, 337-354.
8. Duncan, B. S. & Olson, A. J. (1993) Biopolymers 33, 231-238.
9. Fetrow, J. S. & Skolnick, J. (1998) J. Mol. Biol. 281, 949-968.
10. Fetrow, J. S., Godzik, A. & Skolnick, J. (1998) J. Mol. Biol. 282, 703-711.
11. Pappu, R. V., Marshall, G. R. & Ponder, J. W. (1999) Nat. Struct. Biol. 6, 50-55.
12. Trosset, J.-Y. & Scheraga, H. A. (1998) Proc. Nat. Acad. Sci. USA 95, 8011-8015.
13. Robert, C. H. & Janin, J. (1998) J. Mol. Biol. 283, 1037-1047.
14. Vakser, I. A. (1996) Protein Eng. 9, 37-41.
15. Berg, O. G. & von Hippel, P. H. (1985) Annu. Rev. Biophys. Biophys. Chem. 14, 131-160.
16. McCammon, J. A. (1998) Curr. Opin. Struct. Biol. 8, 245-249.
17. Panchenko, A. R., Luthey-Schulten, Z., Cole, R. & Wolynes, P. G. (1997) J. Mol. Biol. 272, 95-105.
18. Zhang, C., Chen, J. & DeLisi, C. (1999) Proteins 34, 255-267
19. Camacho, C. J., Weng, Z., Vajda, S. & DeLisi, C. (1999) Biophys. J. 76, 1166-1178.
20. Sternberg, M. J. E., Gabb, H. A. & Jackson, R. M. (1998) Curr. Opin. Struct. Biol. 8, 250-256.
21. Kuntz, I. D., Meng, E. C. & Shoichet, B. K. (1994) Acc. Chem. Res. 27, 117-123.
22. Vajda, S., Sippl, M. & Novotny, J. (1997) Curr. Opin. Struct. Biol. 7, 222-228.
23. Dixon, J. S. (1997) Proteins, Suppl. 1, 198-204.
24. Vakser, I. A. (1997) Proteins, Suppl. 1, 226-230.
25. Dunbrack, R. L. J., Gerloff, D. L., Bower, M., Chen, X., Lichtarge, O. & Cohen, F. E. (1997) Fold. Des. 2, R27-R42.
26. Sanchez, R. & Sali, A. (1998) Proc. Natl. Acad. Sci. USA 95, 13597-13602.
27. Katchalski-Katzir, E., Shariv, I., Eisenstein, M., Friesem, A. A., Aflalo, C. & Vakser, I. A. (1992) Proc. Natl. Acad. Sci. USA 89, 2195-2199.
28. Vakser, I. A. & Aflalo, C. (1994) Proteins 20, 320-329.
29. Chang, Y.-T., Stiffelman, O. B., Vakser, I. A., Loew, G. H., Bridges, A. & Waskell, L. (1997) Protein Eng. 10, 119-129.
30. Bridges, A., Gruenke, L., Chang, Y.-T., Vakser, I. A., Loew, G. & Waskell, L. (1998) J. Biol. Chem. 273, 17036-17049.
31. Martin, A. C. R., MacArthur, M. W. & Thornton, J. M. (1997) Proteins, Suppl. 1, 14-28.
32. Marchler-Bauer, A., Levin, M. & Bryant, S. H. (1997) Proteins, Suppl. 1, 83-91.
33. Lesk, A. M. (1997) Proteins, Suppl. 1, 151-166.
34. Abola, E. E., Bernstein, F. C., Bryant, S. H., Koetzle, T. L. & Weng, J. (1987) in Crystallographic Databases - Information Content, Software Systems, Scientific Applications, eds. Allen, F. H., Bergerhoff, G. & Sievers, R. (Data Commission of the International Union of Crystallography, Bonn, Germany), pp. 107-132.
35. Janin, J. & Rodier, F. (1995) Proteins 23, 580-587.
36. Carugo, O. & Argos, P. (1997) Protein Sci. 6, 2261-2263.
37. Tsai, C.-J., Lin, S. L., Wolfson, H. J. & Nussinov, R. (1996) J. Mol. Biol. 260, 604-620.
38. Papoulis, A. (1965) Probability, Random Variables and Stochastic Processes (McGraw-Hill, New York).