-
1
-
-
79953233746
-
Decoding algal genomes: tracing back the history of photosynthetic life on Earth
-
10.1111/j.1365-313X.2011.04540.x, 21443622
-
Tirichine L, Bowler C. Decoding algal genomes: tracing back the history of photosynthetic life on Earth. Plant J 2011, 66(1):45-57. 10.1111/j.1365-313X.2011.04540.x, 21443622.
-
(2011)
Plant J
, vol.66
, Issue.1
, pp. 45-57
-
-
Tirichine, L.1
Bowler, C.2
-
2
-
-
84865142852
-
Exploiting diversity and synthetic biology for the production of algal biofuels
-
10.1038/nature11479, 22895338
-
Georgianna DR, Mayfield SP. Exploiting diversity and synthetic biology for the production of algal biofuels. Nature 2012, 488(7411):329-335. 10.1038/nature11479, 22895338.
-
(2012)
Nature
, vol.488
, Issue.7411
, pp. 329-335
-
-
Georgianna, D.R.1
Mayfield, S.P.2
-
3
-
-
1842429937
-
Ancient invasions: from endosymbionts to organelles
-
10.1126/science.1094884, 15073369
-
Dyall SD, Brown MT, Johnson PJ. Ancient invasions: from endosymbionts to organelles. Science 2004, 304(5668):253-257. 10.1126/science.1094884, 15073369.
-
(2004)
Science
, vol.304
, Issue.5668
, pp. 253-257
-
-
Dyall, S.D.1
Brown, M.T.2
Johnson, P.J.3
-
4
-
-
34347357371
-
The intracellular cyanobacteria of Paulinella chromatophora: endosymbionts or organelles?
-
10.1016/j.tim.2007.05.002, 17537638
-
Bodyl A, Mackiewicz P, Stiller JW. The intracellular cyanobacteria of Paulinella chromatophora: endosymbionts or organelles?. Trends Microbiol 2007, 15(7):295-296. 10.1016/j.tim.2007.05.002, 17537638.
-
(2007)
Trends Microbiol
, vol.15
, Issue.7
, pp. 295-296
-
-
Bodyl, A.1
Mackiewicz, P.2
Stiller, J.W.3
-
5
-
-
0034913239
-
The origin and early evolution of mitochondria
-
REVIEWS1018, 138985, 16173164
-
Gray MW, Burger G, Lang BF. The origin and early evolution of mitochondria. Genome Biol 2001, 2(6): REVIEWS1018, 138985, 16173164.
-
(2001)
Genome Biol
, vol.2
, Issue.6
-
-
Gray, M.W.1
Burger, G.2
Lang, B.F.3
-
6
-
-
0027737969
-
Origin and evolution of organelle genomes
-
10.1016/0959-437X(93)90009-E, 8118213
-
Gray MW. Origin and evolution of organelle genomes. Curr Opin Genet Dev 1993, 3(6):884-890. 10.1016/0959-437X(93)90009-E, 8118213.
-
(1993)
Curr Opin Genet Dev
, vol.3
, Issue.6
, pp. 884-890
-
-
Gray, M.W.1
-
7
-
-
0742323538
-
Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes
-
Timmis JN, Ayliffe MA, Huang CY, Martin W. Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. Nat Rev Genet 2004, 5(2):123-135.
-
(2004)
Nat Rev Genet
, vol.5
, Issue.2
, pp. 123-135
-
-
Timmis, J.N.1
Ayliffe, M.A.2
Huang, C.Y.3
Martin, W.4
-
8
-
-
70449135018
-
Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids
-
10.1186/1471-2148-9-253, 2765969, 19835607
-
Le Corguille G, Pearson G, Valente M, Viegas C, Gschloessl B, Corre E, Bailly X, Peters AF, Jubin C, Vacherie B, et al. Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids. BMC Evol Biol 2009, 9:253. 10.1186/1471-2148-9-253, 2765969, 19835607.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 253
-
-
Le Corguille, G.1
Pearson, G.2
Valente, M.3
Viegas, C.4
Gschloessl, B.5
Corre, E.6
Bailly, X.7
Peters, A.F.8
Jubin, C.9
Vacherie, B.10
-
9
-
-
79957554546
-
Choosing and using a plant DNA barcode
-
10.1371/journal.pone.0019254, 3102656, 21637336
-
Hollingsworth PM, Graham SW, Little DP. Choosing and using a plant DNA barcode. Plos One 2011, 6(5):e19254. 10.1371/journal.pone.0019254, 3102656, 21637336.
-
(2011)
Plos One
, vol.6
, Issue.5
-
-
Hollingsworth, P.M.1
Graham, S.W.2
Little, D.P.3
-
10
-
-
33748371658
-
Assessing the use of the mitochondrial cox1 marker for use in DNA barcoding of red algae (Rhodophyta)
-
10.3732/ajb.93.8.1101, 21642175
-
Robba L, Russell SJ, Barker GL, Brodie J. Assessing the use of the mitochondrial cox1 marker for use in DNA barcoding of red algae (Rhodophyta). Am J Bot 2006, 93(8):1101-1108. 10.3732/ajb.93.8.1101, 21642175.
-
(2006)
Am J Bot
, vol.93
, Issue.8
, pp. 1101-1108
-
-
Robba, L.1
Russell, S.J.2
Barker, G.L.3
Brodie, J.4
-
11
-
-
84871671992
-
Methods for DNA barcoding photosynthetic protists emphasizing the macroalgae and diatoms
-
10.1007/978-1-61779-591-6_10, 22684958
-
Saunders GW, McDevit DC. Methods for DNA barcoding photosynthetic protists emphasizing the macroalgae and diatoms. Methods Mol Biol 2012, 858:207-222. 10.1007/978-1-61779-591-6_10, 22684958.
-
(2012)
Methods Mol Biol
, vol.858
, pp. 207-222
-
-
Saunders, G.W.1
McDevit, D.C.2
-
12
-
-
34447272660
-
A molecular assessment of northeast Pacific Alaria species (Laminariales, Phaeophyceae) with reference to the utility of DNA barcoding
-
10.1016/j.ympev.2007.03.016, 17544704
-
Lane CE, Lindstrom SC, Saunders GW. A molecular assessment of northeast Pacific Alaria species (Laminariales, Phaeophyceae) with reference to the utility of DNA barcoding. Mol Phylogenet Evol 2007, 44(2):634-648. 10.1016/j.ympev.2007.03.016, 17544704.
-
(2007)
Mol Phylogenet Evol
, vol.44
, Issue.2
, pp. 634-648
-
-
Lane, C.E.1
Lindstrom, S.C.2
Saunders, G.W.3
-
13
-
-
65349085716
-
Assigning morphological variants of Fucus (Fucales, Phaeophyceae) in Canadian waters to recognized species using DNA barcoding
-
Kucera H, Saunders GW. Assigning morphological variants of Fucus (Fucales, Phaeophyceae) in Canadian waters to recognized species using DNA barcoding. Botany-Botanique 2008, 86(9):1065-1079.
-
(2008)
Botany-Botanique
, vol.86
, Issue.9
, pp. 1065-1079
-
-
Kucera, H.1
Saunders, G.W.2
-
14
-
-
66149156972
-
On the utility of DNA barcoding for species differentiation among brown macroalgae (Phaeophyceae) including a novel extraction protocol
-
McDevit DC, Saunders GW. On the utility of DNA barcoding for species differentiation among brown macroalgae (Phaeophyceae) including a novel extraction protocol. Phycological Res 2009, 57(2):131-141.
-
(2009)
Phycological Res
, vol.57
, Issue.2
, pp. 131-141
-
-
McDevit, D.C.1
Saunders, G.W.2
-
15
-
-
77958161817
-
A DNA barcode examination of the Laminariaceae (Phaeophyceae) in Canada reveals novel biogeographical and evolutionary insights
-
McDevit DC, Saunders GW. A DNA barcode examination of the Laminariaceae (Phaeophyceae) in Canada reveals novel biogeographical and evolutionary insights. Phycologia 2010, 49(3):235-248.
-
(2010)
Phycologia
, vol.49
, Issue.3
, pp. 235-248
-
-
McDevit, D.C.1
Saunders, G.W.2
-
16
-
-
78951474201
-
An evaluation of rbcL, tufA, UPA, LSU and ITS as DNA barcode markers for the marine green macroalgae
-
Saunders GW, Kucera H. An evaluation of rbcL, tufA, UPA, LSU and ITS as DNA barcode markers for the marine green macroalgae. Cryptogamie Algologie 2010, 31(4):487-528.
-
(2010)
Cryptogamie Algologie
, vol.31
, Issue.4
, pp. 487-528
-
-
Saunders, G.W.1
Kucera, H.2
-
17
-
-
78951483518
-
An assessment of proposed DNA barcodes in freshwater green algae
-
Hall JD, Fucikova K, Lo C, Lewis LA, Karol KG. An assessment of proposed DNA barcodes in freshwater green algae. Cryptogamie Algologie 2010, 31(4):529-555.
-
(2010)
Cryptogamie Algologie
, vol.31
, Issue.4
, pp. 529-555
-
-
Hall, J.D.1
Fucikova, K.2
Lo, C.3
Lewis, L.A.4
Karol, K.G.5
-
18
-
-
0000402955
-
Functional organization of chlorophyll-alpha and carotenoids in the alga, Nannochloropsis salina
-
10.1104/pp.83.2.434, 1056375, 16665263
-
Brown JS. Functional organization of chlorophyll-alpha and carotenoids in the alga, Nannochloropsis salina. Plant Physiol 1987, 83(2):434-437. 10.1104/pp.83.2.434, 1056375, 16665263.
-
(1987)
Plant Physiol
, vol.83
, Issue.2
, pp. 434-437
-
-
Brown, J.S.1
-
19
-
-
83055194317
-
Nuclear monoploidy and asexual propagation of Nannochloropsis oceanica (Eustigmatophyceae) as revealed by its genome sequence
-
Pan K, Qin JJ, Li S, Dai WK, Zhu BH, Jin YC, Yu WG, Yang GP, Li DF. Nuclear monoploidy and asexual propagation of Nannochloropsis oceanica (Eustigmatophyceae) as revealed by its genome sequence. J Phycol 2011, 47(6):1425-1432.
-
(2011)
J Phycol
, vol.47
, Issue.6
, pp. 1425-1432
-
-
Pan, K.1
Qin, J.J.2
Li, S.3
Dai, W.K.4
Zhu, B.H.5
Jin, Y.C.6
Yu, W.G.7
Yang, G.P.8
Li, D.F.9
-
20
-
-
84857701617
-
Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana
-
3293424, 22353717
-
Radakovits R, Jinkerson RE, Fuerstenberg SI, Tae H, Settlage RE, Boore JL, Posewitz MC. Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana. Nat Commun 2012, 3:686. 3293424, 22353717.
-
(2012)
Nat Commun
, vol.3
, pp. 686
-
-
Radakovits, R.1
Jinkerson, R.E.2
Fuerstenberg, S.I.3
Tae, H.4
Settlage, R.E.5
Boore, J.L.6
Posewitz, M.C.7
-
21
-
-
84870681271
-
Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779
-
10.1371/journal.pgen.1003064, 3499364, 23166516
-
Vieler A, Wu GX, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, et al. Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. Plos Genetics 2012, 8(11):e1003064. 10.1371/journal.pgen.1003064, 3499364, 23166516.
-
(2012)
Plos Genetics
, vol.8
, Issue.11
-
-
Vieler, A.1
Wu, G.X.2
Tsai, C.H.3
Bullard, B.4
Cornish, A.J.5
Harvey, C.6
Reca, I.B.7
Thornburg, C.8
Achawanantakun, R.9
Buehl, C.J.10
-
22
-
-
84858748155
-
Accurate and reliable quantification of total microalgal fuel potential as fatty acid methyl esters by in situ transesterification
-
10.1007/s00216-012-5814-0, 3309134, 22349344
-
Laurens LML, Quinn M, Van Wychen S, Templeton DW, Wolfrum EJ. Accurate and reliable quantification of total microalgal fuel potential as fatty acid methyl esters by in situ transesterification. Anal Bioanal Chem 2012, 403(1):167-178. 10.1007/s00216-012-5814-0, 3309134, 22349344.
-
(2012)
Anal Bioanal Chem
, vol.403
, Issue.1
, pp. 167-178
-
-
Laurens, L.M.L.1
Quinn, M.2
Van Wychen, S.3
Templeton, D.W.4
Wolfrum, E.J.5
-
23
-
-
84877721429
-
Genomic insights from the oleaginous model alga Nannochloropsis gaditana
-
10.4161/bioe.21880, 3566019, 22922732
-
Jinkerson RE, Radakovits R, Posewitz MC. Genomic insights from the oleaginous model alga Nannochloropsis gaditana. Bioengineered 2013, 4(1):37-43. 10.4161/bioe.21880, 3566019, 22922732.
-
(2013)
Bioengineered
, vol.4
, Issue.1
, pp. 37-43
-
-
Jinkerson, R.E.1
Radakovits, R.2
Posewitz, M.C.3
-
24
-
-
84871461706
-
Effects of temperature and nutrient regimes on biomass and lipid production by six oleaginous microalgae in batch culture employing a two-phase cultivation strategy
-
Roleda MY, Slocombe SP, Leakey RJ, Day JG, Bell EM, Stanley MS. Effects of temperature and nutrient regimes on biomass and lipid production by six oleaginous microalgae in batch culture employing a two-phase cultivation strategy. Bioresour Technol 2013, 129:439-449.
-
(2013)
Bioresour Technol
, vol.129
, pp. 439-449
-
-
Roleda, M.Y.1
Slocombe, S.P.2
Leakey, R.J.3
Day, J.G.4
Bell, E.M.5
Stanley, M.S.6
-
25
-
-
34347227056
-
Observations on the diversity and ecology of freshwater Nannochloropsis (Eustigmatophyceae), with descriptions of new taxa
-
10.1016/j.protis.2007.03.003, 17576099
-
Fawley KP, Fawley MW. Observations on the diversity and ecology of freshwater Nannochloropsis (Eustigmatophyceae), with descriptions of new taxa. Protist 2007, 158(3):325-336. 10.1016/j.protis.2007.03.003, 17576099.
-
(2007)
Protist
, vol.158
, Issue.3
, pp. 325-336
-
-
Fawley, K.P.1
Fawley, M.W.2
-
26
-
-
33947414878
-
Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage
-
10.1007/s00438-006-0199-4, 17252281
-
Oudot-Le Secq MP, Grimwood J, Shapiro H, Armbrust EV, Bowler C, Green BR. Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage. Mol Genet Genomics 2007, 277(4):427-439. 10.1007/s00438-006-0199-4, 17252281.
-
(2007)
Mol Genet Genomics
, vol.277
, Issue.4
, pp. 427-439
-
-
Oudot-Le Secq, M.P.1
Grimwood, J.2
Shapiro, H.3
Armbrust, E.V.4
Bowler, C.5
Green, B.R.6
-
27
-
-
0024118070
-
The chloroplast genome of the green alga Chlamydomonas moewusii - localization of protein-coding genes and transcriptionally active regions
-
10.1007/BF00330474, 3216854
-
Turmel M, Lemieux B, Lemieux C. The chloroplast genome of the green alga Chlamydomonas moewusii - localization of protein-coding genes and transcriptionally active regions. Mol Gen Genet 1988, 214(3):412-419. 10.1007/BF00330474, 3216854.
-
(1988)
Mol Gen Genet
, vol.214
, Issue.3
, pp. 412-419
-
-
Turmel, M.1
Lemieux, B.2
Lemieux, C.3
-
28
-
-
79953318145
-
Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana
-
Oudot-Le Secq MP, Green BR. Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana. Gene 2011, 476(1-2):20-26.
-
(2011)
Gene
, vol.476
, Issue.1-2
, pp. 20-26
-
-
Oudot-Le Secq, M.P.1
Green, B.R.2
-
29
-
-
84869174792
-
Alveolate mitochondrial metabolic evolution: dinoflagellates force reassessment of the role of parasitism as a driver of change in apicomplexans
-
10.1093/molbev/mss205, 22923466
-
Danne JC, Gornik SG, MacRae JI, McConville MJ, Waller RF. Alveolate mitochondrial metabolic evolution: dinoflagellates force reassessment of the role of parasitism as a driver of change in apicomplexans. Mol Biol Evol 2013, 30(1):123-139. 10.1093/molbev/mss205, 22923466.
-
(2013)
Mol Biol Evol
, vol.30
, Issue.1
, pp. 123-139
-
-
Danne, J.C.1
Gornik, S.G.2
MacRae, J.I.3
McConville, M.J.4
Waller, R.F.5
-
30
-
-
1542391587
-
Plastidic genome of higher plants and algae: structure and function
-
Odintsova MS, Iurina NP. Plastidic genome of higher plants and algae: structure and function. Mol Biol (Mosk) 2003, 37(5):768-783.
-
(2003)
Mol Biol (Mosk)
, vol.37
, Issue.5
, pp. 768-783
-
-
Odintsova, M.S.1
Iurina, N.P.2
-
31
-
-
84867304546
-
Gene flow and biological conflict systems in the origin and evolution of eukaryotes
-
3417536, 22919680
-
Aravind L, Anantharaman V, Zhang D, de Souza RF, Iyer LM. Gene flow and biological conflict systems in the origin and evolution of eukaryotes. Front Cell Infect Microbiol 2012, 2:89. 3417536, 22919680.
-
(2012)
Front Cell Infect Microbiol
, vol.2
, pp. 89
-
-
Aravind, L.1
Anantharaman, V.2
Zhang, D.3
de Souza, R.F.4
Iyer, L.M.5
-
32
-
-
70349751729
-
Fine-scale mergers of chloroplast and mitochondrial genes create functional, transcompartmentally chimeric mitochondrial genes
-
10.1073/pnas.0908766106, 2757801, 19805364
-
Hao W, Palmer JD. Fine-scale mergers of chloroplast and mitochondrial genes create functional, transcompartmentally chimeric mitochondrial genes. Proc Natl Acad Sci USA 2009, 106(39):16728-16733. 10.1073/pnas.0908766106, 2757801, 19805364.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.39
, pp. 16728-16733
-
-
Hao, W.1
Palmer, J.D.2
-
33
-
-
84857955194
-
Chloroplast-mitochondria cross-talk in diatoms
-
10.1093/jxb/err441, 22268145
-
Prihoda J, Tanaka A, de Paula WB, Allen JF, Tirichine L, Bowler C. Chloroplast-mitochondria cross-talk in diatoms. J Exp Bot 2012, 63(4):1543-1557. 10.1093/jxb/err441, 22268145.
-
(2012)
J Exp Bot
, vol.63
, Issue.4
, pp. 1543-1557
-
-
Prihoda, J.1
Tanaka, A.2
de Paula, W.B.3
Allen, J.F.4
Tirichine, L.5
Bowler, C.6
-
34
-
-
79953019364
-
Red algae lose key mitochondrial genes in response to becoming parasitic
-
10.1093/gbe/evq075, 3014286, 21081313
-
Hancock L, Goff L, Lane C. Red algae lose key mitochondrial genes in response to becoming parasitic. Genome Biol Evol 2010, 2:897-910. 10.1093/gbe/evq075, 3014286, 21081313.
-
(2010)
Genome Biol Evol
, vol.2
, pp. 897-910
-
-
Hancock, L.1
Goff, L.2
Lane, C.3
-
35
-
-
82255162152
-
The chloroplast genome of the green alga Schizomeris leibleinii (Chlorophyceae) provides evidence for bidirectional DNA replication from a single origin in the chaetophorales
-
10.1093/gbe/evr037, 3138424, 21546564
-
Brouard JS, Otis C, Lemieux C, Turmel M. The chloroplast genome of the green alga Schizomeris leibleinii (Chlorophyceae) provides evidence for bidirectional DNA replication from a single origin in the chaetophorales. Genome Biol Evol 2011, 3:505-515. 10.1093/gbe/evr037, 3138424, 21546564.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 505-515
-
-
Brouard, J.S.1
Otis, C.2
Lemieux, C.3
Turmel, M.4
-
36
-
-
0037143760
-
The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants
-
10.1073/pnas.162203299, 123247, 12161560
-
Turmel M, Otis C, Lemieux C. The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants. Proc Natl Acad Sci USA 2002, 99(17):11275-11280. 10.1073/pnas.162203299, 123247, 12161560.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.17
, pp. 11275-11280
-
-
Turmel, M.1
Otis, C.2
Lemieux, C.3
-
37
-
-
23944523620
-
The chloroplast genome sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) reveals unusual structural features and new insights into the branching order of chlorophyte lineages
-
10.1093/molbev/msi182, 15930151
-
Pombert JF, Otis C, Lemieux C, Turmel M. The chloroplast genome sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) reveals unusual structural features and new insights into the branching order of chlorophyte lineages. Mol Biol Evol 2005, 22(9):1903-1918. 10.1093/molbev/msi182, 15930151.
-
(2005)
Mol Biol Evol
, vol.22
, Issue.9
, pp. 1903-1918
-
-
Pombert, J.F.1
Otis, C.2
Lemieux, C.3
Turmel, M.4
-
38
-
-
70349921146
-
The chloroplast genomes of the green algae Pedinomonas minor, Parachlorella kessleri, and Oocystis solitatia reveal a shared ancestry between the Pedinomonadales and Chlorellales
-
10.1093/molbev/msp138, 19578159
-
Turmel M, Otis C, Lemieux C. The chloroplast genomes of the green algae Pedinomonas minor, Parachlorella kessleri, and Oocystis solitatia reveal a shared ancestry between the Pedinomonadales and Chlorellales. Mol Biol Evol 2009, 26(10):2317-2331. 10.1093/molbev/msp138, 19578159.
-
(2009)
Mol Biol Evol
, vol.26
, Issue.10
, pp. 2317-2331
-
-
Turmel, M.1
Otis, C.2
Lemieux, C.3
-
39
-
-
33644938217
-
The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes
-
10.1186/1741-7007-4-3, 1402334, 16472375
-
Pombert JF, Lemieux C, Turmel M. The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes. BMC Biol 2006, 4:3. 10.1186/1741-7007-4-3, 1402334, 16472375.
-
(2006)
BMC Biol
, vol.4
, pp. 3
-
-
Pombert, J.F.1
Lemieux, C.2
Turmel, M.3
-
40
-
-
0033759528
-
The structure and gene repertoire of an ancient red algal plastid genome
-
Glockner G, Rosenthal A, Valentin K. The structure and gene repertoire of an ancient red algal plastid genome. J Mol Evol 2000, 51(4):382-390.
-
(2000)
J Mol Evol
, vol.51
, Issue.4
, pp. 382-390
-
-
Glockner, G.1
Rosenthal, A.2
Valentin, K.3
-
41
-
-
67649998350
-
Genomic footprints of a cryptic plastid endosymbiosis in diatoms
-
10.1126/science.1172983, 19556510
-
Moustafa A, Beszteri B, Maier UG, Bowler C, Valentin K, Bhattacharya D. Genomic footprints of a cryptic plastid endosymbiosis in diatoms. Science 2009, 324(5935):1724-1726. 10.1126/science.1172983, 19556510.
-
(2009)
Science
, vol.324
, Issue.5935
, pp. 1724-1726
-
-
Moustafa, A.1
Beszteri, B.2
Maier, U.G.3
Bowler, C.4
Valentin, K.5
Bhattacharya, D.6
-
42
-
-
33244468402
-
Phylogenomic analysis identifies red algal genes of endosymbiotic origin in the chromalveolates
-
Li SL, Nosenko T, Hackett JD, Bhattacharya D. Phylogenomic analysis identifies red algal genes of endosymbiotic origin in the chromalveolates. Mol Biol Evol 2006, 23(3):663-674.
-
(2006)
Mol Biol Evol
, vol.23
, Issue.3
, pp. 663-674
-
-
Li, S.L.1
Nosenko, T.2
Hackett, J.D.3
Bhattacharya, D.4
-
43
-
-
24944535992
-
The complete plastid genome sequence of the haptophyte Emiliania huxleyi: a comparison to other plastid genomes
-
10.1093/dnares/12.2.151, 16303746
-
Sanchez Puerta MV, Bachvaroff TR, Delwiche CF. The complete plastid genome sequence of the haptophyte Emiliania huxleyi: a comparison to other plastid genomes. DNA Res 2005, 12(2):151-156. 10.1093/dnares/12.2.151, 16303746.
-
(2005)
DNA Res
, vol.12
, Issue.2
, pp. 151-156
-
-
Sanchez Puerta, M.V.1
Bachvaroff, T.R.2
Delwiche, C.F.3
-
44
-
-
77954636478
-
A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids
-
10.1073/pnas.1003335107, 2890776, 20534454
-
Janouskovec J, Horak A, Obornik M, Lukes J, Keeling PJ. A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc Natl Acad Sci U S A 2010, 107(24):10949-10954. 10.1073/pnas.1003335107, 2890776, 20534454.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.24
, pp. 10949-10954
-
-
Janouskovec, J.1
Horak, A.2
Obornik, M.3
Lukes, J.4
Keeling, P.J.5
-
45
-
-
34547781748
-
Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny
-
10.1093/molbev/msm101, 17522086
-
Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM. Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Mol Biol Evol 2007, 24(8):1832-1842. 10.1093/molbev/msm101, 17522086.
-
(2007)
Mol Biol Evol
, vol.24
, Issue.8
, pp. 1832-1842
-
-
Khan, H.1
Parks, N.2
Kozera, C.3
Curtis, B.A.4
Parsons, B.J.5
Bowman, S.6
Archibald, J.M.7
-
46
-
-
77954167446
-
The complete plastid genome sequence of the secondarily nonphotosynthetic alga Cryptomonas paramecium: reduction, compaction, and accelerated evolutionary rate
-
2839278, 20333213
-
Donaher N, Tanifuji G, Onodera NT, Malfatti SA, Chain PSG, Hara Y, Archibald JM. The complete plastid genome sequence of the secondarily nonphotosynthetic alga Cryptomonas paramecium: reduction, compaction, and accelerated evolutionary rate. Genome Biol Evol 2009, 1:439-448. 2839278, 20333213.
-
(2009)
Genome Biol Evol
, vol.1
, pp. 439-448
-
-
Donaher, N.1
Tanifuji, G.2
Onodera, N.T.3
Malfatti, S.A.4
Chain, P.S.G.5
Hara, Y.6
Archibald, J.M.7
-
47
-
-
0026455621
-
Structural organization of the chloroplast genome of the chromophytic alga Vaucheria bursata
-
10.1007/BF00018459, 1731981
-
Linne von berg KH, Kowallik KV. Structural organization of the chloroplast genome of the chromophytic alga Vaucheria bursata. Plant Mol Biol 1992, 18(1):83-95. 10.1007/BF00018459, 1731981.
-
(1992)
Plant Mol Biol
, vol.18
, Issue.1
, pp. 83-95
-
-
Linne von berg, K.H.1
Kowallik, K.V.2
-
48
-
-
44849092579
-
Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains
-
10.1186/1471-2164-9-211, 2410131, 18462506
-
Cattolico RA, Jacobs MA, Zhou Y, Chang J, Duplessis M, Lybrand T, Mckay J, Ong HC, Sims E, Rocap G. Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains. BMC Genomics 2008, 9:211. 10.1186/1471-2164-9-211, 2410131, 18462506.
-
(2008)
BMC Genomics
, vol.9
, pp. 211
-
-
Cattolico, R.A.1
Jacobs, M.A.2
Zhou, Y.3
Chang, J.4
Duplessis, M.5
Lybrand, T.6
Mckay, J.7
Ong, H.C.8
Sims, E.9
Rocap, G.10
-
49
-
-
78249237859
-
Nucleus-independent control of the Rubisco operon by the plastid-encoded transcription factor Ycf30 in the red alga Cyanidioschyzon merolae
-
10.1104/pp.110.163188, 2971626, 20813908
-
Minoda A, Weber APM, Tanaka K, Miyagishima S. Nucleus-independent control of the Rubisco operon by the plastid-encoded transcription factor Ycf30 in the red alga Cyanidioschyzon merolae. Plant Physiol 2010, 154(3):1532-1540. 10.1104/pp.110.163188, 2971626, 20813908.
-
(2010)
Plant Physiol
, vol.154
, Issue.3
, pp. 1532-1540
-
-
Minoda, A.1
Weber, A.P.M.2
Tanaka, K.3
Miyagishima, S.4
-
50
-
-
84865734218
-
Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici
-
10.1094/MPMI-02-12-0028-R, 3551261, 22712506
-
Lamour KH, Mudge J, Gobena D, Hurtado-Gonzales OP, Schmutz J, Kuo A, Miller NA, Rice BJ, Raffaele S, Cano LM, et al. Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici. Mol Plant Microbe Interact 2012, 25(10):1350-1360. 10.1094/MPMI-02-12-0028-R, 3551261, 22712506.
-
(2012)
Mol Plant Microbe Interact
, vol.25
, Issue.10
, pp. 1350-1360
-
-
Lamour, K.H.1
Mudge, J.2
Gobena, D.3
Hurtado-Gonzales, O.P.4
Schmutz, J.5
Kuo, A.6
Miller, N.A.7
Rice, B.J.8
Raffaele, S.9
Cano, L.M.10
-
51
-
-
6044235515
-
The mitochondrial genome of Saprolegnia ferax: organization, gene content and nucleotide sequence
-
10.2307/3762082, 21148919
-
Grayburn WS, Hudspeth DSS, Gane MK, Hudspeth MES. The mitochondrial genome of Saprolegnia ferax: organization, gene content and nucleotide sequence. Mycologia 2004, 96(5):981-989. 10.2307/3762082, 21148919.
-
(2004)
Mycologia
, vol.96
, Issue.5
, pp. 981-989
-
-
Grayburn, W.S.1
Hudspeth, D.S.S.2
Gane, M.K.3
Hudspeth, M.E.S.4
-
52
-
-
0035283304
-
Reducing the genome size of organelles favours gene transfer to the nucleus
-
10.1016/S0169-5347(00)02084-X, 11179577
-
Selosse MA, Albert BR, Godelle B. Reducing the genome size of organelles favours gene transfer to the nucleus. Trends Ecol Evol 2001, 16(3):135-141. 10.1016/S0169-5347(00)02084-X, 11179577.
-
(2001)
Trends Ecol Evol
, vol.16
, Issue.3
, pp. 135-141
-
-
Selosse, M.A.1
Albert, B.R.2
Godelle, B.3
-
53
-
-
84869020793
-
PredAlgo: a new subcellular localization prediction tool dedicated to green algae
-
10.1093/molbev/mss178, 22826458
-
Tardif M, Atteia A, Specht M, Cogne G, Rolland N, Brugiere S, Hippler M, Ferro M, Bruley C, Peltier G, et al. PredAlgo: a new subcellular localization prediction tool dedicated to green algae. Mol Biol Evol 2012, 29(12):3625-3639. 10.1093/molbev/mss178, 22826458.
-
(2012)
Mol Biol Evol
, vol.29
, Issue.12
, pp. 3625-3639
-
-
Tardif, M.1
Atteia, A.2
Specht, M.3
Cogne, G.4
Rolland, N.5
Brugiere, S.6
Hippler, M.7
Ferro, M.8
Bruley, C.9
Peltier, G.10
-
54
-
-
62549146647
-
Chloroplast RNA: editing by pentatricopeptide repeat proteins
-
10.1105/tpc.109.210114, 2648099, 19182102
-
Mach J. Chloroplast RNA: editing by pentatricopeptide repeat proteins. Plant Cell 2009, 21(1):17. 10.1105/tpc.109.210114, 2648099, 19182102.
-
(2009)
Plant Cell
, vol.21
, Issue.1
, pp. 17
-
-
Mach, J.1
-
55
-
-
85011940618
-
PPR proteins network as site-specific RNA editing factors in plant organelles
-
10.4161/rna.8.1.14298, 21289490
-
Zehrmann A, Verbitskiy D, Hartel B, Brennicke A, Takenaka M. PPR proteins network as site-specific RNA editing factors in plant organelles. RNA Biol 2011, 8(1):67-70. 10.4161/rna.8.1.14298, 21289490.
-
(2011)
RNA Biol
, vol.8
, Issue.1
, pp. 67-70
-
-
Zehrmann, A.1
Verbitskiy, D.2
Hartel, B.3
Brennicke, A.4
Takenaka, M.5
-
56
-
-
56549086194
-
Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants
-
10.1016/j.ympev.2008.09.009, 18838124
-
Drouin G, Daoud H, Xia J. Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants. Mol Phylogenet Evol 2008, 49(3):827-831. 10.1016/j.ympev.2008.09.009, 18838124.
-
(2008)
Mol Phylogenet Evol
, vol.49
, Issue.3
, pp. 827-831
-
-
Drouin, G.1
Daoud, H.2
Xia, J.3
-
57
-
-
0029905884
-
Ebb and flow of the chloroplast inverted repeat
-
Goulding SE, Olmstead RG, Morden CW, Wolfe KH. Ebb and flow of the chloroplast inverted repeat. Mol Gen Genet 1996, 252(1-2):195-206.
-
(1996)
Mol Gen Genet
, vol.252
, Issue.1-2
, pp. 195-206
-
-
Goulding, S.E.1
Olmstead, R.G.2
Morden, C.W.3
Wolfe, K.H.4
-
58
-
-
78650298751
-
Recent transfer of an iron-regulated gene from the plastid to the nuclear genome in an oceanic diatom adapted to chronic iron limitation
-
10.1186/1471-2164-11-718, 3022921, 21171997
-
Lommer M, Roy AS, Schilhabel M, Schreiber S, Rosenstiel P, LaRoche J. Recent transfer of an iron-regulated gene from the plastid to the nuclear genome in an oceanic diatom adapted to chronic iron limitation. BMC Genomics 2010, 11:718. 10.1186/1471-2164-11-718, 3022921, 21171997.
-
(2010)
BMC Genomics
, vol.11
, pp. 718
-
-
Lommer, M.1
Roy, A.S.2
Schilhabel, M.3
Schreiber, S.4
Rosenstiel, P.5
LaRoche, J.6
-
59
-
-
33645235614
-
Complete sequence and organization of the cucumber (Cucumis sativus L. cv. Baekmibaekdadagi) chloroplast genome
-
10.1007/s00299-005-0097-y, 16362300
-
Kim JS, Jung JD, Lee JA, Park HW, Oh KH, Jeong WJ, Choi DW, Liu JR, Cho KY. Complete sequence and organization of the cucumber (Cucumis sativus L. cv. Baekmibaekdadagi) chloroplast genome. Plant Cell Rep 2006, 25(4):334-340. 10.1007/s00299-005-0097-y, 16362300.
-
(2006)
Plant Cell Rep
, vol.25
, Issue.4
, pp. 334-340
-
-
Kim, J.S.1
Jung, J.D.2
Lee, J.A.3
Park, H.W.4
Oh, K.H.5
Jeong, W.J.6
Choi, D.W.7
Liu, J.R.8
Cho, K.Y.9
-
60
-
-
80051801650
-
Determination of the melon chloroplast and mitochondrial genome sequences reveals that the largest reported mitochondrial genome in plants contains a significant amount of DNA having a nuclear origin
-
10.1186/1471-2164-12-424, 3175227, 21854637
-
Rodriguez-Moreno L, Gonzalez VM, Benjak A, Marti MC, Puigdomenech P, Aranda MA, Garcia-Mas J. Determination of the melon chloroplast and mitochondrial genome sequences reveals that the largest reported mitochondrial genome in plants contains a significant amount of DNA having a nuclear origin. BMC Genomics 2011, 12:424. 10.1186/1471-2164-12-424, 3175227, 21854637.
-
(2011)
BMC Genomics
, vol.12
, pp. 424
-
-
Rodriguez-Moreno, L.1
Gonzalez, V.M.2
Benjak, A.3
Marti, M.C.4
Puigdomenech, P.5
Aranda, M.A.6
Garcia-Mas, J.7
-
61
-
-
0024025601
-
Chloroplast genomes of two conifers lack a large inverted repeat and are extensively rearranged
-
10.1073/pnas.85.11.3898, 280327, 2836862
-
Strauss SH, Palmer JD, Howe GT, Doerksen AH. Chloroplast genomes of two conifers lack a large inverted repeat and are extensively rearranged. Proc Natl Acad Sci USA 1988, 85(11):3898-3902. 10.1073/pnas.85.11.3898, 280327, 2836862.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, Issue.11
, pp. 3898-3902
-
-
Strauss, S.H.1
Palmer, J.D.2
Howe, G.T.3
Doerksen, A.H.4
-
62
-
-
84863206928
-
The complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction
-
10.1093/gbe/evs021, 3318433, 22403032
-
Lin CP, Wu CS, Huang YY, Chaw SM. The complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction. Genome Biol Evol 2012, 4(3):374-381. 10.1093/gbe/evs021, 3318433, 22403032.
-
(2012)
Genome Biol Evol
, vol.4
, Issue.3
, pp. 374-381
-
-
Lin, C.P.1
Wu, C.S.2
Huang, Y.Y.3
Chaw, S.M.4
-
63
-
-
84855848337
-
Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny
-
10.1093/gbe/evr095, 3219958, 21933779
-
Wu CS, Wang YN, Hsu CY, Lin CP, Chaw SM. Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny. Genome Biol Evol 2011, 3:1284-1295. 10.1093/gbe/evr095, 3219958, 21933779.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 1284-1295
-
-
Wu, C.S.1
Wang, Y.N.2
Hsu, C.Y.3
Lin, C.P.4
Chaw, S.M.5
-
64
-
-
43549096694
-
Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
-
10.1186/1471-2148-8-36, 2275221, 18237435
-
Wang RJ, Cheng CL, Chang CC, Wu CL, Su TM, Chaw SM. Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots. BMC Evol Biol 2008, 8:36. 10.1186/1471-2148-8-36, 2275221, 18237435.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 36
-
-
Wang, R.J.1
Cheng, C.L.2
Chang, C.C.3
Wu, C.L.4
Su, T.M.5
Chaw, S.M.6
-
65
-
-
77953230250
-
Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes
-
10.1007/s00294-010-0293-3, 20309551
-
Ravin NV, Galachyants YP, Mardanov AV, Beletsky AV, Petrova DP, Sherbakova TA, Zakharova YR, Likhoshway YV, Skryabin KG, Grachev MA. Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes. Curr Genet 2010, 56(3):215-223. 10.1007/s00294-010-0293-3, 20309551.
-
(2010)
Curr Genet
, vol.56
, Issue.3
, pp. 215-223
-
-
Ravin, N.V.1
Galachyants, Y.P.2
Mardanov, A.V.3
Beletsky, A.V.4
Petrova, D.P.5
Sherbakova, T.A.6
Zakharova, Y.R.7
Likhoshway, Y.V.8
Skryabin, K.G.9
Grachev, M.A.10
-
66
-
-
31044432650
-
Complete mitochondrial genomes of the three brown algae (Heterokonta: Phaeophyceae) Dictyota dichotoma, Fucus vesiculosus and Desmarestia viridis
-
10.1007/s00294-005-0031-4, 16317568
-
Oudot-Le Secq MP, Loiseaux-de Goer S, Stam WT, Olsen JL. Complete mitochondrial genomes of the three brown algae (Heterokonta: Phaeophyceae) Dictyota dichotoma, Fucus vesiculosus and Desmarestia viridis. Curr Genet 2006, 49(1):47-58. 10.1007/s00294-005-0031-4, 16317568.
-
(2006)
Curr Genet
, vol.49
, Issue.1
, pp. 47-58
-
-
Oudot-Le Secq, M.P.1
Loiseaux-de Goer, S.2
Stam, W.T.3
Olsen, J.L.4
-
67
-
-
84869393149
-
DNA barcoding as an effective tool in improving a digital plant identification system: a case study for the area of Mt. Valerio, Trieste (NE Italy)
-
10.1371/journal.pone.0043256, 3438168, 22970123
-
Bruni I, De Mattia F, Martellos S, Galimberti A, Savadori P, Casiraghi M, Nimis PL, Labra M. DNA barcoding as an effective tool in improving a digital plant identification system: a case study for the area of Mt. Valerio, Trieste (NE Italy). Plos One 2012, 7(9):e43256. 10.1371/journal.pone.0043256, 3438168, 22970123.
-
(2012)
Plos One
, vol.7
, Issue.9
-
-
Bruni, I.1
De Mattia, F.2
Martellos, S.3
Galimberti, A.4
Savadori, P.5
Casiraghi, M.6
Nimis, P.L.7
Labra, M.8
-
68
-
-
83755207349
-
Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants
-
3241788, 22100737
-
Li DZ, Gao LM, Li HT, Wang H, Ge XJ, Liu JQ, Chen ZD, Zhou SL, Chen SL, Yang JB, et al. Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proc Natl Acad Sci USA 2011, 108(49):19641-19646. 3241788, 22100737.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.49
, pp. 19641-19646
-
-
Li, D.Z.1
Gao, L.M.2
Li, H.T.3
Wang, H.4
Ge, X.J.5
Liu, J.Q.6
Chen, Z.D.7
Zhou, S.L.8
Chen, S.L.9
Yang, J.B.10
-
69
-
-
72449177852
-
Barcoding of diatoms: nuclear encoded ITS revisited
-
10.1016/j.protis.2009.07.001, 19674931
-
Moniz MBJ, Kaczmarska I. Barcoding of diatoms: nuclear encoded ITS revisited. Protist 2010, 161(1):7-34. 10.1016/j.protis.2009.07.001, 19674931.
-
(2010)
Protist
, vol.161
, Issue.1
, pp. 7-34
-
-
Moniz, M.B.J.1
Kaczmarska, I.2
-
70
-
-
0023462635
-
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
-
10.1073/pnas.84.24.9054, 299690, 3480529
-
Wolfe KH, Li WH, Sharp PM. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci USA 1987, 84(24):9054-9058. 10.1073/pnas.84.24.9054, 299690, 3480529.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, Issue.24
, pp. 9054-9058
-
-
Wolfe, K.H.1
Li, W.H.2
Sharp, P.M.3
-
71
-
-
0029610067
-
Uniparental inheritance of mitochondrial and chloroplast genes - mechanisms and evolution
-
10.1073/pnas.92.25.11331, 40394, 8524780
-
Birky CW. Uniparental inheritance of mitochondrial and chloroplast genes - mechanisms and evolution. Proc Natl Acad Sci USA 1995, 92(25):11331-11338. 10.1073/pnas.92.25.11331, 40394, 8524780.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, Issue.25
, pp. 11331-11338
-
-
Birky, C.W.1
-
72
-
-
84879165176
-
Microsatellite analysis in organelle genomes of Chlorophyta
-
10.6026/97320630008255, 3321234, 22493532
-
Kuntal H, Sharma V, Daniell H. Microsatellite analysis in organelle genomes of Chlorophyta. Bioinformation 2012, 8(6):255-259. 10.6026/97320630008255, 3321234, 22493532.
-
(2012)
Bioinformation
, vol.8
, Issue.6
, pp. 255-259
-
-
Kuntal, H.1
Sharma, V.2
Daniell, H.3
-
73
-
-
37249014420
-
Chloroplast vector systems for biotechnology applications
-
10.1104/pp.107.106690, 2151729, 18056863
-
Verma D, Daniell H. Chloroplast vector systems for biotechnology applications. Plant Physiol 2007, 145(4):1129-1143. 10.1104/pp.107.106690, 2151729, 18056863.
-
(2007)
Plant Physiol
, vol.145
, Issue.4
, pp. 1129-1143
-
-
Verma, D.1
Daniell, H.2
-
74
-
-
84874961299
-
Establishing oleaginous microalgae research models for consolidated bioprocessing of solar energy
-
Wang D, Lu Y, Huang H, Xu J. Establishing oleaginous microalgae research models for consolidated bioprocessing of solar energy. Adv Biochem Eng Biotechnol 2012, 128:69-84.
-
(2012)
Adv Biochem Eng Biotechnol
, vol.128
, pp. 69-84
-
-
Wang, D.1
Lu, Y.2
Huang, H.3
Xu, J.4
-
75
-
-
33744496294
-
Genomic DNA isolation from green and brown algae (Caulerpales and Fucales) for microsatellite library construction
-
Varela-Alvarez E, Andreakis N, Lago-Leston A, Pearson GA, Serrao EA, Procaccini G, Duarte CM, Marba N. Genomic DNA isolation from green and brown algae (Caulerpales and Fucales) for microsatellite library construction. J Phycol 2006, 42(3):741-745.
-
(2006)
J Phycol
, vol.42
, Issue.3
, pp. 741-745
-
-
Varela-Alvarez, E.1
Andreakis, N.2
Lago-Leston, A.3
Pearson, G.A.4
Serrao, E.A.5
Procaccini, G.6
Duarte, C.M.7
Marba, N.8
-
76
-
-
40049104732
-
SOAP: short oligonucleotide alignment program
-
10.1093/bioinformatics/btn025, 18227114
-
Li RQ, Li YR, Kristiansen K, Wang J. SOAP: short oligonucleotide alignment program. Bioinformatics 2008, 24(5):713-714. 10.1093/bioinformatics/btn025, 18227114.
-
(2008)
Bioinformatics
, vol.24
, Issue.5
, pp. 713-714
-
-
Li, R.Q.1
Li, Y.R.2
Kristiansen, K.3
Wang, J.4
-
77
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
10.1101/gr.8.3.175, 9521921
-
Ewing B, Hillier L, Wendl MC, Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 1998, 8(3):175-185. 10.1101/gr.8.3.175, 9521921.
-
(1998)
Genome Res
, vol.8
, Issue.3
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
78
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing B, Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 1998, 8(3):186-194.
-
(1998)
Genome Res
, vol.8
, Issue.3
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
79
-
-
0031955116
-
Consed: a graphical tool for sequence finishing
-
10.1101/gr.8.3.195, 9521923
-
Gordon D, Abajian C, Green P. Consed: a graphical tool for sequence finishing. Genome Res 1998, 8(3):195-202. 10.1101/gr.8.3.195, 9521923.
-
(1998)
Genome Res
, vol.8
, Issue.3
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
80
-
-
10244240599
-
Automatic annotation of organellar genomes with DOGMA
-
10.1093/bioinformatics/bth352, 15180927
-
Wyman SK, Jansen RK, Boore JL. Automatic annotation of organellar genomes with DOGMA. Bioinformatics 2004, 20(17):3252-3255. 10.1093/bioinformatics/bth352, 15180927.
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 3252-3255
-
-
Wyman, S.K.1
Jansen, R.K.2
Boore, J.L.3
-
81
-
-
34250665888
-
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
-
10.1093/nar/gkm160, 1888812, 17452365
-
Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 2007, 35(9):3100-3108. 10.1093/nar/gkm160, 1888812, 17452365.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.9
, pp. 3100-3108
-
-
Lagesen, K.1
Hallin, P.2
Rodland, E.A.3
Staerfeldt, H.H.4
Rognes, T.5
Ussery, D.W.6
-
82
-
-
0030854739
-
TRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
146525, 9023104
-
Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997, 25(5):955-964. 146525, 9023104.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.5
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
83
-
-
0035834489
-
Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles
-
10.1006/jmbi.2001.5102, 11700055
-
Gautheret D, Lambert A. Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles. J Mol Biol 2001, 313(5):1003-1011. 10.1006/jmbi.2001.5102, 11700055.
-
(2001)
J Mol Biol
, vol.313
, Issue.5
, pp. 1003-1011
-
-
Gautheret, D.1
Lambert, A.2
-
84
-
-
0033066718
-
REPuter: fast computation of maximal repeats in complete genomes
-
10.1093/bioinformatics/15.5.426, 10366664
-
Kurtz S, Schleiermacher C. REPuter: fast computation of maximal repeats in complete genomes. Bioinformatics 1999, 15(5):426-427. 10.1093/bioinformatics/15.5.426, 10366664.
-
(1999)
Bioinformatics
, vol.15
, Issue.5
, pp. 426-427
-
-
Kurtz, S.1
Schleiermacher, C.2
-
85
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
10.1093/molbev/msm092, 17488738
-
Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007, 24(8):1596-1599. 10.1093/molbev/msm092, 17488738.
-
(2007)
Mol Biol Evol
, vol.24
, Issue.8
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
86
-
-
3242891068
-
VISTA: computational tools for comparative genomics
-
10.1093/nar/gkh458, 441596, 15215394
-
Frazer KA, Pachter L, Poliakov A, Rubin EM, Dubchak I. VISTA: computational tools for comparative genomics. Nucleic Acids Res 2004, 32:W273-W279. 10.1093/nar/gkh458, 441596, 15215394.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Frazer, K.A.1
Pachter, L.2
Poliakov, A.3
Rubin, E.M.4
Dubchak, I.5
-
87
-
-
40749117710
-
GenomeVx: simple web-based creation of editable circular chromosome maps
-
10.1093/bioinformatics/btm598, 18227121
-
Conant GC, Wolfe KH. GenomeVx: simple web-based creation of editable circular chromosome maps. Bioinformatics 2008, 24(6):861-862. 10.1093/bioinformatics/btm598, 18227121.
-
(2008)
Bioinformatics
, vol.24
, Issue.6
, pp. 861-862
-
-
Conant, G.C.1
Wolfe, K.H.2
-
88
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
10.1093/nar/gkh340, 390337, 15034147
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32(5):1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
89
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
10.1093/oxfordjournals.molbev.a026334, 10742046
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000, 17(4):540-552. 10.1093/oxfordjournals.molbev.a026334, 10742046.
-
(2000)
Mol Biol Evol
, vol.17
, Issue.4
, pp. 540-552
-
-
Castresana, J.1
-
90
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
10.1080/10635150390235520, 14530136
-
Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52(5):696-704. 10.1080/10635150390235520, 14530136.
-
(2003)
Syst Biol
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
91
-
-
33745256005
-
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
-
10.1080/10635150600755453, 16785212
-
Anisimova M, Gascuel O. Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst Biol 2006, 55(4):539-552. 10.1080/10635150600755453, 16785212.
-
(2006)
Syst Biol
, vol.55
, Issue.4
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
92
-
-
0030683599
-
PAML: a program package for phylogenetic analysis by maximum likelihood
-
Yang ZH. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 1997, 13(5):555-556.
-
(1997)
Comput Appl Biosci
, vol.13
, Issue.5
, pp. 555-556
-
-
Yang, Z.H.1
-
93
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package (Version 3.2)
-
Felsenstein J. PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 1989, 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
94
-
-
34547844062
-
TOPD/FMTS: a new software to compare phylogenetic trees
-
10.1093/bioinformatics/btm135, 17459965
-
Puigbo P, Garcia-Vallve S, McInerney JO. TOPD/FMTS: a new software to compare phylogenetic trees. Bioinformatics 2007, 23(12):1556-1558. 10.1093/bioinformatics/btm135, 17459965.
-
(2007)
Bioinformatics
, vol.23
, Issue.12
, pp. 1556-1558
-
-
Puigbo, P.1
Garcia-Vallve, S.2
McInerney, J.O.3
-
95
-
-
0347513220
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods
-
10.1093/bioinformatics/btg359, 14668244
-
Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 2003, 19(18):2496-2497. 10.1093/bioinformatics/btg359, 14668244.
-
(2003)
Bioinformatics
, vol.19
, Issue.18
, pp. 2496-2497
-
-
Rozas, J.1
Sanchez-DelBarrio, J.C.2
Messeguer, X.3
Rozas, R.4
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