-
1
-
-
0019984101
-
Mitochondrial and chloroplast genomes of maize have a 12-kilobase DNA sequence in common
-
Stern DB, Lonsdale DM (1982) Mitochondrial and chloroplast genomes of maize have a 12-kilobase DNA sequence in common. Nature 299:698-702.
-
(1982)
Nature
, vol.299
, pp. 698-702
-
-
Stern, D.B.1
Lonsdale, D.M.2
-
2
-
-
0021362098
-
Extensive and widespread homologies between mitochondrial DNA and chloroplast DNA in plants
-
Stern DB, Palmer JD (1984) Extensive and widespread homologies between mitochondrial DNA and chloroplast DNA in plants. Proc Natl Acad Sci USA 81:1946-1950.
-
(1984)
Proc Natl Acad Sci USA
, vol.81
, pp. 1946-1950
-
-
Stern, D.B.1
Palmer, J.D.2
-
3
-
-
0020488498
-
Promiscuous DNA: Chloroplast genes inside plant mitochondria
-
Ellis J (1982) Promiscuous DNA: Chloroplast genes inside plant mitochondria. Nature 299:678-679.
-
(1982)
Nature
, vol.299
, pp. 678-679
-
-
Ellis, J.1
-
4
-
-
57749192264
-
MtDNA of Vitis vinifera and the issue of rampant horizontal gene transfer
-
Goremykin VV, Salamini F, Velasco R, Viola R (2008) mtDNA of Vitis vinifera and the issue of rampant horizontal gene transfer. Mol Biol Evol 26:99-110.
-
(2008)
Mol Biol Evol
, vol.26
, pp. 99-110
-
-
Goremykin, V.V.1
Salamini, F.2
Velasco, R.3
Viola, R.4
-
5
-
-
33748895571
-
An exceptional horizontal gene transfer in plastids: Gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters
-
Rice DW, Palmer JD (2006) An exceptional horizontal gene transfer in plastids: Gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters. BMC Biol 4:31.
-
(2006)
BMC Biol
, vol.4
, pp. 31
-
-
Rice, D.W.1
Palmer, J.D.2
-
6
-
-
0031671173
-
Transcription of plastid-derived tRNA genes in rice mitochondria
-
DOI 10.1007/s002940050389
-
Miyata S, Nakazono M, Hirai A (1998) Transcription of plastid-derived tRNA genes in rice mitochondria. Curr Genet 34:216-220. (Pubitemid 28458490)
-
(1998)
Current Genetics
, vol.34
, Issue.3
, pp. 216-220
-
-
Miyata, S.-I.1
Nakazono, M.2
Hirai, A.3
-
7
-
-
0029809949
-
A chloroplast-derived sequence is utilized as a source of promoter sequences for the gene for subunit 9 of NADH dehydrogenase (nad9) in rice mitochondria
-
Nakazono M, Nishiwaki S, Tsutsumi N, Hirai A (1996) A chloroplast-derived sequence is utilized as a source of promoter sequences for the gene for subunit 9 of NADH dehydrogenase (nad9) in rice mitochondria. Mol Gen Genet 252:371-378. (Pubitemid 126450902)
-
(1996)
Molecular Genetics and Genomics
, vol.252
, Issue.4
, pp. 371-378
-
-
Nakazono, M.1
Nishiwaki, S.2
Tsutsumi, N.3
Hirai, A.4
-
8
-
-
0023462635
-
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
-
Wolfe KH, Li WH, Sharp PM (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci USA 84:9054-9058.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 9054-9058
-
-
Wolfe, K.H.1
Li, W.H.2
Sharp, P.M.3
-
9
-
-
34548568981
-
Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants
-
DOI 10.1186/1471-2148-7-135
-
Mower JP, Touzet P, Gummow JS, Delph LF, Palmer JD (2007) Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants. BMC Evol Biol 7:135. (Pubitemid 350092576)
-
(2007)
BMC Evolutionary Biology
, vol.7
, pp. 135
-
-
Mower, J.P.1
Touzet, P.2
Gummow, J.S.3
Delph, L.F.4
Palmer, J.D.5
-
10
-
-
0032709783
-
DNA sequence similarity requirements for interspecific recombination in Bacillus
-
Majewski J, Cohan FM (1999) DNA sequence similarity requirements for interspecific recombination in Bacillus. Genetics 153:1525-1533.
-
(1999)
Genetics
, vol.153
, pp. 1525-1533
-
-
Majewski, J.1
Cohan, F.M.2
-
11
-
-
34548743476
-
Gene conversion: Mechanisms, evolution and human disease
-
DOI 10.1038/nrg2193, PII NRG2193
-
Chen JM, Cooper DN, Chuzhanova N, Ferec C, Patrinos GP (2007) Gene conversion: Mechanisms, evolution and human disease. Nat Rev Genet 6:762-777. (Pubitemid 47429210)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.10
, pp. 762-775
-
-
Chen, J.-M.1
Cooper, D.N.2
Chuzhanova, N.3
Ferec, C.4
Patrinos, G.P.5
-
12
-
-
0036301764
-
Gene conversion and the evolution of euryarchaeal chaperonins: Amaximum likelihood-based method for detecting conflicting phylogenetic signals
-
Archibald JM, Roger AJ (2002) Gene conversion and the evolution of euryarchaeal chaperonins: Amaximum likelihood-based method for detecting conflicting phylogenetic signals. J Mol Evol 55:232-245.
-
(2002)
J Mol Evol
, vol.55
, pp. 232-245
-
-
Archibald, J.M.1
Roger, A.J.2
-
13
-
-
14144251065
-
Discovery of a free-living chlorophyll d-producing cyanobacterium with a hybrid proteobacterial/cyanobacterial small-subunit rRNA gene
-
Miller SR, et al. (2005) Discovery of a free-living chlorophyll d-producing cyanobacterium with a hybrid proteobacterial/cyanobacterial small-subunit rRNA gene. Proc Natl Acad Sci USA 102:850-855.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 850-855
-
-
Miller, S.R.1
-
14
-
-
33645214579
-
Recombination between elongation factor 1α genes from distantly related archaeal lineages
-
Inagaki Y, Susko E, Roger AJ (2006) Recombination between elongation factor 1α genes from distantly related archaeal lineages. Proc Natl Acad Sci USA 103:4528-4533.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 4528-4533
-
-
Inagaki, Y.1
Susko, E.2
Roger, A.J.3
-
15
-
-
0035845578
-
Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase
-
Keeling PJ, Palmer JD (2001) Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase. Proc Natl Acad Sci USA 98:10745-10750.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 10745-10750
-
-
Keeling, P.J.1
Palmer, J.D.2
-
16
-
-
0037819441
-
Widespread horizontal transfer of mitochondrial genes in flowering plants
-
DOI 10.1038/nature01743
-
Bergthorsson U, Adams KL, Thomason B, Palmer JD (2003) Widespread horizontal transfer of mitochondrial genes in flowering plants. Nature 424:197-201. (Pubitemid 36858687)
-
(2003)
Nature
, vol.424
, Issue.6945
, pp. 197-201
-
-
Bergthorsson, U.1
Adams, K.L.2
Thomason, B.3
Palmer, J.D.4
-
17
-
-
39049101019
-
Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants
-
Barkman TJ, et al. (2007) Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants. BMC Evol Biol 7:248.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 248
-
-
Barkman, T.J.1
-
18
-
-
8144231087
-
A farewell to Bonferroni: The problems of low statistical power and publication bias
-
Nakagawa S (2004) A farewell to Bonferroni: The problems of low statistical power and publication bias. Behav Ecol 15:1044-1045.
-
(2004)
Behav Ecol
, vol.15
, pp. 1044-1045
-
-
Nakagawa, S.1
-
19
-
-
33845904639
-
Horizontal gene transfer in plants
-
Richardson AO, Palmer JD (2007) Horizontal gene transfer in plants. J Exp Bot 58:1-9.
-
(2007)
J Exp Bot
, vol.58
, pp. 1-9
-
-
Richardson, A.O.1
Palmer, J.D.2
-
20
-
-
0037162534
-
Punctuated evolution of mitochondrial gene content: High and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution
-
DOI 10.1073/pnas.042694899
-
Adams KL, Qiu YL, Stoutemyer M, Palmer JD (2002) Punctuated evolution of mitochondrial gene content: High and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution. Proc Natl Acad Sci USA 99:9905-9912. (Pubitemid 34831145)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.15
, pp. 9905-9912
-
-
Adams, K.L.1
Qiu, Y.-L.2
Stoutemyer, M.3
Palmer, J.D.4
-
21
-
-
0033793019
-
Rare genomic changes as a tool for phylogenetics
-
DOI 10.1016/S0169-5347(00)01967-4, PII S0169534700019674
-
Rokas A, Holland PW (2000) Rare genomic changes as a tool for phylogenetics. Trends Ecol Evol 15:454-459. (Pubitemid 30802813)
-
(2000)
Trends in Ecology and Evolution
, vol.15
, Issue.11
, pp. 454-459
-
-
Rokas, A.1
Holland, P.W.H.2
-
22
-
-
0021264854
-
Tripartite structure of the Brassica campestris mitochondrial genome
-
Palmer JD, Shields CR (1984) Tripartite structure of the Brassica campestris mitochondrial genome. Nature 307:437-440.
-
(1984)
Nature
, vol.307
, pp. 437-440
-
-
Palmer, J.D.1
Shields, C.R.2
-
23
-
-
0021768590
-
The physical map and organization of the mitochondrial genome from the fertile cytoplasm of maize
-
Lonsdale DM, Hodge TP, Fauron CMR (1984) The physical map and organization of the mitochondrial genome from the fertile cytoplasm of maize. Nucleic Acids Res 12:9249-9261.
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 9249-9261
-
-
Lonsdale, D.M.1
Hodge, T.P.2
Fauron, C.M.R.3
-
24
-
-
31144457022
-
Mitochondrial mutations in plants
-
eds Day DA, Millar AH, Whelan J (Kluwer, Dordrecht, The Netherlands)
-
Newton KJ, Gabay-Laughnan S, De Paepe R (2004) Mitochondrial mutations in plants. Plant Mitochondria: From Genome to Function, eds Day DA, Millar AH, Whelan J (Kluwer, Dordrecht, The Netherlands), pp 121-142.
-
(2004)
Plant Mitochondria: From Genome to Function
, pp. 121-142
-
-
Newton, K.J.1
Gabay-Laughnan, S.2
De Paepe, R.3
-
25
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
DOI 10.1093/nar/gkh340
-
Edgar RC (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797. (Pubitemid 38832724)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
26
-
-
0242578620
-
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
-
DOI 10.1080/10635150390235520
-
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704. (Pubitemid 37365050)
-
(2003)
Systematic Biology
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
27
-
-
0033824415
-
RDP: Detection of recombination amongst aligned sequences
-
Martin D, Rybicki E (2000) RDP: Detection of recombination amongst aligned sequences. Bioinformatics 16:562-563.
-
(2000)
Bioinformatics
, vol.16
, pp. 562-563
-
-
Martin, D.1
Rybicki, E.2
-
28
-
-
0030928378
-
Seq-gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
-
Rambaut A, Grassly NC (1997) Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput Appl Biosci 13:235-238. (Pubitemid 27249927)
-
(1997)
Computer Applications in the Biosciences
, vol.13
, Issue.3
, pp. 235-238
-
-
Rambaut, A.1
Grassly, N.C.2
|