메뉴 건너뛰기




Volumn 24, Issue 5, 2013, Pages 615-630

Quantitative proteomic analysis of ibuprofen-degrading Patulibacter sp. strain I11

Author keywords

Aromatic compounds; Degradation; Ibuprofen; Patulibacter sp.; Quantitative proteomics

Indexed keywords

BACTERIAL PROTEOMES; BIOLOGICAL PROCESS; IBUPROFEN; PATULIBACTER SP; PHARMACEUTICAL DRUGS; PROTEIN IDENTIFICATION; QUANTITATIVE PROTEOMIC ANALYSIS; QUANTITATIVE PROTEOMICS;

EID: 84880946541     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10532-012-9610-5     Document Type: Article
Times cited : (66)

References (57)
  • 2
    • 73249116888 scopus 로고    scopus 로고
    • Software tool for researching annotations of proteins: open-source protein annotation software with data visualization
    • Bhatia VN, Perlman DH, Costello CE, McComb ME (2009) Software tool for researching annotations of proteins: open-source protein annotation software with data visualization. Anal Chem 81: 9819-9823.
    • (2009) Anal Chem , vol.81 , pp. 9819-9823
    • Bhatia, V.N.1    Perlman, D.H.2    Costello, C.E.3    McComb, M.E.4
  • 3
    • 0033178848 scopus 로고    scopus 로고
    • Occurrence and environmental behavior of the chiral pharmaceutical drug ibuprofen in surface waters and in wastewater
    • Buser HR, Poiger T, Muller MD (1999) Occurrence and environmental behavior of the chiral pharmaceutical drug ibuprofen in surface waters and in wastewater. Environ Sci Technol 33: 2529-2535.
    • (1999) Environ Sci Technol , vol.33 , pp. 2529-2535
    • Buser, H.R.1    Poiger, T.2    Muller, M.D.3
  • 4
    • 67650895633 scopus 로고    scopus 로고
    • Physiological comparison of Pseudomonas putida between two growth phases during cometabolism of 4-chlorophenol in presence of phenol and glutamate: a proteomics approach
    • Cao B, Loh K-C (2009) Physiological comparison of Pseudomonas putida between two growth phases during cometabolism of 4-chlorophenol in presence of phenol and glutamate: a proteomics approach. J Chem Technol Biotechnol 84: 1178-1185.
    • (2009) J Chem Technol Biotechnol , vol.84 , pp. 1178-1185
    • Cao, B.1    Loh, K.-C.2
  • 5
    • 0028219711 scopus 로고
    • Microbial transformation of ibuprofen by a Nocardia Species
    • Chen YJ, Rosazza JPN (1994) Microbial transformation of ibuprofen by a Nocardia Species. Appl Environ Microbiol 60: 1292-1296.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 1292-1296
    • Chen, Y.J.1    Rosazza, J.P.N.2
  • 6
    • 65549135131 scopus 로고    scopus 로고
    • Inducer responses of BenM, a LysR-type transcriptional regulator from Acinetobacter baylyi ADP1
    • Craven SH, Ezezika OC, Haddad S, Hall RA, Momany C, Neidle EL (2009) Inducer responses of BenM, a LysR-type transcriptional regulator from Acinetobacter baylyi ADP1. Mol Microbiol 72: 881-894.
    • (2009) Mol Microbiol , vol.72 , pp. 881-894
    • Craven, S.H.1    Ezezika, O.C.2    Haddad, S.3    Hall, R.A.4    Momany, C.5    Neidle, E.L.6
  • 7
    • 0033383635 scopus 로고    scopus 로고
    • Pharmaceuticals and personal care products in the environment: agents of subtle change?
    • Daughton CG, Ternes TA (1999) Pharmaceuticals and personal care products in the environment: agents of subtle change? Environ Health Perspect 107: 907-938.
    • (1999) Environ Health Perspect , vol.107 , pp. 907-938
    • Daughton, C.G.1    Ternes, T.A.2
  • 8
    • 0032476062 scopus 로고    scopus 로고
    • Catabolism of phenylacetic acid in Escherichia coli: characterization of a new aerobic hybrid pathway
    • Ferrandez A, Minambres B, Garcia B, Olivera ER, Luengo JM, Garcia JL, Diaz E (1998) Catabolism of phenylacetic acid in Escherichia coli: characterization of a new aerobic hybrid pathway. J Biol Chem 273: 25974-25986.
    • (1998) J Biol Chem , vol.273 , pp. 25974-25986
    • Ferrandez, A.1    Minambres, B.2    Garcia, B.3    Olivera, E.R.4    Luengo, J.M.5    Garcia, J.L.6    Diaz, E.7
  • 9
    • 0034029015 scopus 로고    scopus 로고
    • Aromatic hydrocarbon dioxygenases in environmental biotechnology
    • Gibson DT, Parales RE (2000) Aromatic hydrocarbon dioxygenases in environmental biotechnology. Curr Opin Biotechnol 11: 236-243.
    • (2000) Curr Opin Biotechnol , vol.11 , pp. 236-243
    • Gibson, D.T.1    Parales, R.E.2
  • 10
    • 70449622561 scopus 로고    scopus 로고
    • Media containing aromatic compounds induce peculiar proteins in Acinetobacter radioresistens, as revealed by proteome analysis
    • Giuffrida MG, Pessione E, Mazzoli R, Dellavalle G, Barello C, Conti A, Giunta C (2001) Media containing aromatic compounds induce peculiar proteins in Acinetobacter radioresistens, as revealed by proteome analysis. Electrophoresis 22: 1705-1711.
    • (2001) Electrophoresis , vol.22 , pp. 1705-1711
    • Giuffrida, M.G.1    Pessione, E.2    Mazzoli, R.3    Dellavalle, G.4    Barello, C.5    Conti, A.6    Giunta, C.7
  • 11
    • 68049101430 scopus 로고    scopus 로고
    • Physiological adaptation of Corynebacterium glutamicum to benzoate as alternative carbon source-a membrane proteome-centric view
    • Haussmann U, Qi S-W, Wolters D, Roegner M, Liu S-J, Poetsch A (2009) Physiological adaptation of Corynebacterium glutamicum to benzoate as alternative carbon source-a membrane proteome-centric view. Proteomics 9: 3635-3651.
    • (2009) Proteomics , vol.9 , pp. 3635-3651
    • Haussmann, U.1    Qi, S.-W.2    Wolters, D.3    Roegner, M.4    Liu, S.-J.5    Poetsch, A.6
  • 12
    • 0037052865 scopus 로고    scopus 로고
    • Occurrence, fate, and removal of pharmaceutical residues in the aquatic environment: a review of recent research data
    • Heberer T (2002) Occurrence, fate, and removal of pharmaceutical residues in the aquatic environment: a review of recent research data. Toxicol Lett 131: 5-17.
    • (2002) Toxicol Lett , vol.131 , pp. 5-17
    • Heberer, T.1
  • 14
    • 0036892449 scopus 로고    scopus 로고
    • Prediction of novel archaeal enzymes from sequence-derived features
    • Jensen LJ, Skovgaard M, Brunak S (2002) Prediction of novel archaeal enzymes from sequence-derived features. Protein Sci 11: 2894-2898.
    • (2002) Protein Sci , vol.11 , pp. 2894-2898
    • Jensen, L.J.1    Skovgaard, M.2    Brunak, S.3
  • 16
    • 10644256477 scopus 로고    scopus 로고
    • Identification of proteins induced by polycyclic aromatic hydrocarbon in Mycobacterium vanbaalenii PYR-1 using two-dimensional polyacrylamide gel electrophoresis and de novo sequencing methods
    • Kim SJ, Jones RC, Cha CJ, Kweon O, Edmondson RD, Cerniglia CE (2004) Identification of proteins induced by polycyclic aromatic hydrocarbon in Mycobacterium vanbaalenii PYR-1 using two-dimensional polyacrylamide gel electrophoresis and de novo sequencing methods. Proteomics 4: 3899-3908.
    • (2004) Proteomics , vol.4 , pp. 3899-3908
    • Kim, S.J.1    Jones, R.C.2    Cha, C.J.3    Kweon, O.4    Edmondson, R.D.5    Cerniglia, C.E.6
  • 17
    • 34648822321 scopus 로고    scopus 로고
    • A proteomics strategy for the analysis of bacterial biodegradation pathways
    • Kim SI, Choi JS, Kahng HY (2007) A proteomics strategy for the analysis of bacterial biodegradation pathways. OMICS 11: 280-294.
    • (2007) Omics , vol.11 , pp. 280-294
    • Kim, S.I.1    Choi, J.S.2    Kahng, H.Y.3
  • 18
    • 66349136181 scopus 로고    scopus 로고
    • Proteomic applications to elucidate bacterial aromatic hydrocarbon metabolic pathways
    • Kim SJ, Kweon O, Cerniglia CE (2009) Proteomic applications to elucidate bacterial aromatic hydrocarbon metabolic pathways. Curr Opin Microbiol 12: 301-309.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 301-309
    • Kim, S.J.1    Kweon, O.2    Cerniglia, C.E.3
  • 19
  • 20
    • 67349114112 scopus 로고    scopus 로고
    • The presence of pharmaceuticals in the environment due to human use -present knowledge and future challenges
    • Kummerer K (2009) The presence of pharmaceuticals in the environment due to human use -present knowledge and future challenges. J Environ Manage 90: 2354-2366.
    • (2009) J Environ Manage , vol.90 , pp. 2354-2366
    • Kummerer, K.1
  • 23
    • 0036499301 scopus 로고    scopus 로고
    • A new quantitative method of real time reverse transcription polymerase chain reaction assay based on simulation of polymerase chain reaction kinetics
    • Liu W, Saint DA (2002) A new quantitative method of real time reverse transcription polymerase chain reaction assay based on simulation of polymerase chain reaction kinetics. Anal Biochem 302: 52-59.
    • (2002) Anal Biochem , vol.302 , pp. 52-59
    • Liu, W.1    Saint, D.A.2
  • 24
    • 43949102015 scopus 로고    scopus 로고
    • Paradigm in biodegradation using Pseudomonas putida-a review of proteomics studies
    • Loh K-C, Cao B (2008) Paradigm in biodegradation using Pseudomonas putida-a review of proteomics studies. Enzyme Microb Technol 43: 1-12.
    • (2008) Enzyme Microb Technol , vol.43 , pp. 1-12
    • Loh, K.-C.1    Cao, B.2
  • 25
    • 84880926632 scopus 로고    scopus 로고
    • The catabolism of phenylacetic acid and other related molecules in Pseudomonas putida U
    • A. Filloux and J.-L. Ramos (Eds.), New York: Springer
    • Luengo JM, Arias S, Olivera R (2007) The catabolism of phenylacetic acid and other related molecules in Pseudomonas putida U. In: Filloux A, Ramos J-L (eds) Pseudomonas, vol 2. Springer, New York, pp 147-192.
    • (2007) Pseudomonas, Vol 2 , pp. 147-192
    • Luengo, J.M.1    Arias, S.2    Olivera, R.3
  • 26
    • 0025253038 scopus 로고
    • Purification and biochemical characterization of phenylacetyl-CoA ligase from Pseudomonas putida-a specific enzyme for the catabolism of phenylacetic acid
    • Martinez-Blanco H, Reglero A, Rodriguez-Aparicio LB, Luengo JM (1990) Purification and biochemical characterization of phenylacetyl-CoA ligase from Pseudomonas putida-a specific enzyme for the catabolism of phenylacetic acid. J Biol Chem 265: 7084-7090.
    • (1990) J Biol Chem , vol.265 , pp. 7084-7090
    • Martinez-Blanco, H.1    Reglero, A.2    Rodriguez-Aparicio, L.B.3    Luengo, J.M.4
  • 27
    • 26844479893 scopus 로고    scopus 로고
    • Formation of catechols via removal of acid side chains from ibuprofen and related aromatic acids
    • Murdoch RW, Hay AG (2005) Formation of catechols via removal of acid side chains from ibuprofen and related aromatic acids. Appl Environ Microbiol 71: 6121-6125.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 6121-6125
    • Murdoch, R.W.1    Hay, A.G.2
  • 28
    • 77957709353 scopus 로고    scopus 로고
    • Prioritizing research for trace pollutants and emerging contaminants in the freshwater environment
    • Murray KE, Thomas SM, Bodour AA (2010) Prioritizing research for trace pollutants and emerging contaminants in the freshwater environment. Environ Pollut 158: 3462-3471.
    • (2010) Environ Pollut , vol.158 , pp. 3462-3471
    • Murray, K.E.1    Thomas, S.M.2    Bodour, A.A.3
  • 29
    • 0038559504 scopus 로고    scopus 로고
    • Bacterial conversion of hydroxylamino aromatic compounds by both lyase and mutase enzymes involves intramolecular transfer of hydroxyl groups
    • Nadeau LJ, He Z, Spain JC (2003) Bacterial conversion of hydroxylamino aromatic compounds by both lyase and mutase enzymes involves intramolecular transfer of hydroxyl groups. Appl Environ Microbiol 69: 2786-2793.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2786-2793
    • Nadeau, L.J.1    He, Z.2    Spain, J.C.3
  • 30
    • 21144442133 scopus 로고    scopus 로고
    • Phenylacetate catabolism in Rhodococcus sp strain RHA1: a central pathway for degradation of aromatic compounds
    • Navarro-Llorens JM, Patrauchan MA, Stewart GR, Davies JE, Eltis LD, Mohn WW (2005) Phenylacetate catabolism in Rhodococcus sp strain RHA1: a central pathway for degradation of aromatic compounds. J Bacteriol 187: 4497-4504.
    • (2005) J Bacteriol , vol.187 , pp. 4497-4504
    • Navarro-Llorens, J.M.1    Patrauchan, M.A.2    Stewart, G.R.3    Davies, J.E.4    Eltis, L.D.5    Mohn, W.W.6
  • 32
    • 67349227886 scopus 로고    scopus 로고
    • Biodegradation and removal of pharmaceuticals and personal care products in treatment systems: a review
    • Onesios KM, Yu JT, Bouwer EJ (2009) Biodegradation and removal of pharmaceuticals and personal care products in treatment systems: a review. Biodegradation 20: 441-466.
    • (2009) Biodegradation , vol.20 , pp. 441-466
    • Onesios, K.M.1    Yu, J.T.2    Bouwer, E.J.3
  • 33
    • 77958113394 scopus 로고    scopus 로고
    • Impacts of emerging organic contaminants on freshwater resources: review of recent occurrences, sources, fate and effects
    • Pal A, Gin KY, Lin AY, Reinhard M (2010) Impacts of emerging organic contaminants on freshwater resources: review of recent occurrences, sources, fate and effects. Sci Total Environ 408: 6062-6069.
    • (2010) Sci Total Environ , vol.408 , pp. 6062-6069
    • Pal, A.1    Gin, K.Y.2    Lin, A.Y.3    Reinhard, M.4
  • 34
    • 33846990172 scopus 로고    scopus 로고
    • Characterization of beta-ketoadipate pathway from multi-drug resistance bacterium, Acinetobacter baumannii DU202 by proteomic approach
    • Park S-H, Kim J-W, Yun S-H, Leem SH, Kahng H-Y, Kim SI (2006) Characterization of beta-ketoadipate pathway from multi-drug resistance bacterium, Acinetobacter baumannii DU202 by proteomic approach. J Microbiol 44: 632-640.
    • (2006) J Microbiol , vol.44 , pp. 632-640
    • Park, S.-H.1    Kim, J.-W.2    Yun, S.-H.3    Leem, S.H.4    Kahng, H.-Y.5    Kim, S.I.6
  • 35
    • 20444506446 scopus 로고    scopus 로고
    • Catabolism of benzoate and phthalate in Rhodococcus sp strain RHA1: redundancies and convergence
    • Patrauchan MA, Florizone C, Dosanjh M, Molm WW, Davies J, Eltis LD (2005) Catabolism of benzoate and phthalate in Rhodococcus sp strain RHA1: redundancies and convergence. J Bacteriol 187: 4050-4063.
    • (2005) J Bacteriol , vol.187 , pp. 4050-4063
    • Patrauchan, M.A.1    Florizone, C.2    Dosanjh, M.3    Molm, W.W.4    Davies, J.5    Eltis, L.D.6
  • 38
    • 21744460381 scopus 로고    scopus 로고
    • Pathways and metabolites of microbial degradation of selected acidic pharmaceutical and their occurrence in municipal wastewater treated by a membrane bioreactor
    • Quintana JB, Weiss S, Reemtsma T (2005) Pathways and metabolites of microbial degradation of selected acidic pharmaceutical and their occurrence in municipal wastewater treated by a membrane bioreactor. Water Res 39: 2654-2664.
    • (2005) Water Res , vol.39 , pp. 2654-2664
    • Quintana, J.B.1    Weiss, S.2    Reemtsma, T.3
  • 39
    • 77953122046 scopus 로고    scopus 로고
    • Response of Pseudomonas putida KT2440 to phenol at the level of membrane proteome
    • Roma-Rodrigues C, Santos PM, Benndorf D, Rapp E, Sa-Correia I (2010) Response of Pseudomonas putida KT2440 to phenol at the level of membrane proteome. J Proteomics 73: 1461-1478.
    • (2010) J Proteomics , vol.73 , pp. 1461-1478
    • Roma-Rodrigues, C.1    Santos, P.M.2    Benndorf, D.3    Rapp, E.4    Sa-Correia, I.5
  • 40
    • 78751472540 scopus 로고    scopus 로고
    • Analysis of 65 pharmaceuticals and personal care products in 5 wastewater treatment plants in Portugal using a simplified analytical methodology
    • Salgado R, Noronha JP, Oehmen A, Carvalho G, Reis MA (2010) Analysis of 65 pharmaceuticals and personal care products in 5 wastewater treatment plants in Portugal using a simplified analytical methodology. Water Sci Technol 62: 2862-2871.
    • (2010) Water Sci Technol , vol.62 , pp. 2862-2871
    • Salgado, R.1    Noronha, J.P.2    Oehmen, A.3    Carvalho, G.4    Reis, M.A.5
  • 41
    • 80052318234 scopus 로고    scopus 로고
    • Assessing the diurnal variability of pharmaceutical and personal care products in a full-scale activated sludge plant
    • Salgado R, Marques R, Noronha JP, Mexia JT, Carvalho G, Oehmen A, Reis MA (2011) Assessing the diurnal variability of pharmaceutical and personal care products in a full-scale activated sludge plant. Environ Poll 159: 2359-2367.
    • (2011) Environ Poll , vol.159 , pp. 2359-2367
    • Salgado, R.1    Marques, R.2    Noronha, J.P.3    Mexia, J.T.4    Carvalho, G.5    Oehmen, A.6    Reis, M.A.7
  • 42
    • 84863220986 scopus 로고    scopus 로고
    • Assessing the removal of pharmaceuticals and personal care products in a full-scale activated sludge plant
    • Salgado R, Marques R, Noronha JP, Carvalho G, Oehmen A, Reis MA (2012) Assessing the removal of pharmaceuticals and personal care products in a full-scale activated sludge plant. Environ Sci Poll Res Int 19: 1818-1827.
    • (2012) Environ Sci Poll Res Int , vol.19 , pp. 1818-1827
    • Salgado, R.1    Marques, R.2    Noronha, J.P.3    Carvalho, G.4    Oehmen, A.5    Reis, M.A.6
  • 44
    • 44949231424 scopus 로고    scopus 로고
    • Analyzing real-time PCR data by the comparative C(T) method
    • Schmittgen TD, Livak KJ (2008) Analyzing real-time PCR data by the comparative C(T) method. Nat Protoc 3: 1101-1108.
    • (2008) Nat Protoc , vol.3 , pp. 1101-1108
    • Schmittgen, T.D.1    Livak, K.J.2
  • 45
    • 34548178909 scopus 로고    scopus 로고
    • In-gel digestion for mass spectrometric characterization of proteins and proteomes
    • Shevchenko A, Tomas H, Havlis J, Olsen JV, Mann M (2006) In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat Protoc 1: 2856-2860.
    • (2006) Nat Protoc , vol.1 , pp. 2856-2860
    • Shevchenko, A.1    Tomas, H.2    Havlis, J.3    Olsen, J.V.4    Mann, M.5
  • 50
    • 33750591905 scopus 로고    scopus 로고
    • Proteomic and transcriptional characterization of aromatic degradation pathways in Rhodoccocus sp. strain TFB
    • Tomas-Gallardo L, Canosa I, Santero E, Camafeita E, Calvo E, Lopez JA, Floriano B (2006) Proteomic and transcriptional characterization of aromatic degradation pathways in Rhodoccocus sp. strain TFB. Proteomics 6: 119-132.
    • (2006) Proteomics , vol.6 , pp. 119-132
    • Tomas-Gallardo, L.1    Canosa, I.2    Santero, E.3    Camafeita, E.4    Calvo, E.5    Lopez, J.A.6    Floriano, B.7
  • 51
    • 60749119754 scopus 로고    scopus 로고
    • Functional analysis of natural microbial consortia using community proteomics
    • VerBerkmoes N, Denef V, Hettich R, Banfield J (2009) Functional analysis of natural microbial consortia using community proteomics. Nat Rev Microbiol 7: 196-205.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 196-205
    • VerBerkmoes, N.1    Denef, V.2    Hettich, R.3    Banfield, J.4
  • 52
    • 0034912325 scopus 로고    scopus 로고
    • Selective degradation of ibuprofen and clofibric acid in two model river biofilm systems
    • Winkler M, Lawrence JR, Neu TR (2001) Selective degradation of ibuprofen and clofibric acid in two model river biofilm systems. Water Res 35: 3197-3205.
    • (2001) Water Res , vol.35 , pp. 3197-3205
    • Winkler, M.1    Lawrence, J.R.2    Neu, T.R.3
  • 53
    • 68949184363 scopus 로고    scopus 로고
    • Occurrence and removal of pharmaceutically active compounds in sewage treatment plants with different technologies
    • Ying G-G, Kookana RS, Kolpin DW (2009) Occurrence and removal of pharmaceutically active compounds in sewage treatment plants with different technologies. J Environ Monit 11: 1498-1505.
    • (2009) J Environ Monit , vol.11 , pp. 1498-1505
    • Ying, G.-G.1    Kookana, R.S.2    Kolpin, D.W.3
  • 54
  • 56
    • 0038277458 scopus 로고    scopus 로고
    • Short-term tests with a pilot sewage plant and biofilm reactors for the biological degradation of the pharmaceutical compounds clofibric acid, ibuprofen, and diclofenac
    • Zwiener C, Frimmel FH (2003) Short-term tests with a pilot sewage plant and biofilm reactors for the biological degradation of the pharmaceutical compounds clofibric acid, ibuprofen, and diclofenac. Sci Total Environ 309: 201-211.
    • (2003) Sci Total Environ , vol.309 , pp. 201-211
    • Zwiener, C.1    Frimmel, F.H.2
  • 57
    • 0036244798 scopus 로고    scopus 로고
    • Metabolites from the biodegradation of pharmaceutical residues of ibuprofen in biofilm reactors and batch experiments
    • Zwiener C, Seeger S, Glauner T, Frimmel FH (2002) Metabolites from the biodegradation of pharmaceutical residues of ibuprofen in biofilm reactors and batch experiments. Anal Bioanal Chem 372: 569-575.
    • (2002) Anal Bioanal Chem , vol.372 , pp. 569-575
    • Zwiener, C.1    Seeger, S.2    Glauner, T.3    Frimmel, F.H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.