Physiological comparison of Pseudomonas putida between two growth phases during cometabolism of 4-chlorophenol in presence of phenol and glutamate: A proteomics approach

Journal of Chemical Technology and Biotechnology

Volumn 84, Issue 8, 2009, Pages 1178-1185

  Cao, Bin ^a   Loh, Kai Cee ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

2 DE; 4 Chlorophenol; Biodegradation; Cometabolism; MALDI TOF; Pseudomonas putida

Indexed keywords

2-DE; 4-CHLOROPHENOL; COMETABOLISM; MALDI-TOF; PSEUDOMONAS PUTIDA;

BIOCHEMISTRY; BIODEGRADATION; BIOINFORMATICS; CARBOHYDRATES; CATALYSTS; DATA PROCESSING; DEGRADATION; DENSITY (SPECIFIC GRAVITY); DETOXIFICATION; ELECTROPHORESIS; ENZYMES; GELATION; GELS; GROWTH KINETICS; METABOLISM; MICROBIOLOGY; MOLECULAR BIOLOGY; PHENOLS; SODIUM;

SUBSTRATES;

4 CHLOROPHENOL; BACTERIAL ENZYME; GLUTAMIC ACID; OXIDOREDUCTASE; PHENOL; XENOBIOTIC AGENT;

ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL STRAIN; CARBOHYDRATE METABOLISM; CULTURE MEDIUM; DETOXIFICATION; ENERGY METABOLISM; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS; PSEUDOMONAS PUTIDA; QUANTITATIVE ANALYSIS; STRESS; TWO DIMENSIONAL GEL ELECTROPHORESIS;

PSEUDOMONAS PUTIDA;

EID: 67650895633     PISSN: 02682575     EISSN: 10974660     Source Type: Journal    
DOI: 10.1002/jctb.2155     Document Type: Article

References (25)

1. Wang SJ and Loh KC, New cell growth pattern on mixed substrates and substrate utilization in cometabolic transformation of 4-chlorophenol. Water Res 34:3786-3794 (2000).
2. Loh KC and Wu TT, Cometabolic transformation of 2-chlorophenol and 4-chlorophenol in the presence of phenol by Pseudomonas putida. Can J Chem Eng 84:356-367 (2006).
3. Yu YG and Loh KC, Inhibition of p-cresol on aerobic biodegradation of carbazole, and sodium salicylate by Pseudomonas putida. Water Res 36:1794-1802 (2002).
4. Wang SJ, Loh KC and Chua SS, Prediction of critical cell growth behavior of Pseudomonas putida to maximize the cometabolism of 4-chlorophenol with phenol and sodium glutamate as carbon sources. Enzyme Microb Technol 32:422-430 (2003).
5. Reardon KF and Kim KH, Two-dimensional electrophoresis analysis of protein production during growth of Pseudomonas putida F1 on toluene, phenol, and their mixture. Electrophoresis 23:2233-2241 (2002).
6. 54 in response to gentisate induction in Pseudomonas alcaligenes NCIMB 9867. Proteomics 5:1868-1876 (2005).
7. Zhao B, Yeo CC, Lee CC, Geng A, Chew FT and Poh CL, Proteome analysis of gentisate-induced response in Pseudomonas alcaligenes NCIB 9867. Proteomics 4:2028-2036 (2004).
8. Shevchenko A, Wilm M, Vorm O and Mann M, Mass spectrometric sequencing of proteins from silver stained polyacrylamide gels. Anal Chem 68:850-858 (1996).
9. Sonawane A, Kloppner U, Hovel S, Volker U and Rohm K-H, Identification of Pseudomonas proteins coordinately induced by acidic amino acids and their amides: a two-dimensional electrophoresis study. Microbiology 149:2909-2918 (2003).
10. Diamant S, Eliahu N, Rosenthal D and Goloubinoff P, Chemical chaperones regulate molecular chaperones in vitro and in cells under combined salt and heat stresses. J Biol Chem 276:39586-39591 (2001).
11. Santos PM, Benndorf D and Sa-Correia I, Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics. Proteomics 4:2640-2652 (2004).
12. Segura A, Godoy P, van Dillewijn P, Hurtado A, Arroyo N, Santacruz S et al., Proteomic analysis reveals the participation of energy- and stress-related proteins in the response of Pseudomonas putida DOT-T1E to toluene. J Bacteriol 187:5937-5945 (2005).
13. Ellis RJ and Hemmingsen SM, Molecular chaperones - Proteins essential for the biogenesis of some macromolecular structures. Trends Biochem Sci 14:339-342 (1989).
14. Hendrick JP and Hartl FU, Molecular chaperone functions of heatshock proteins. Annu Rev Biochem 62:349-384 (1993).
15. Benndorf D, Loffhagen N and BabelW, Protein synthesis patterns in Acinetobacter calcoaceticus induced by phenol and catechol show specificities of responses to chemostress. FEMS Microbiol Lett 200:247-252 (2001).
16. Kurbatov L, Albrecht D, Herrmann H and Petruschka L, Analysis of the proteome of Pseudomonas putida KT2440 grown on different sources of carbon and energy. Environ Microbiol 8:466-478 (2006).
17. Wieser M, Eberspacher J, Vogler B and Lingens F, Metabolism of 4-chlorophenol by Azotobacter sp GP1 - Structure of the meta cleavage product of 4-chlorocatechol. FEMS Microbiol Lett 116:73-78 (1994).
18. Griese JJ, Jakob RP, Schwarzinger S and Dobbek H, Xenobiotic reductase A in the degradation of quinoline by Pseudomonas putida 86: physiological function, structure and mechanism of 8-hydroxycoumarin reduction. J Mol Biol 361:140-152 (2006).
19. Blehert DS, Knoke KL, Fox BG and Chambliss GH, Regioselectivity of nitroglycerin denitration by flavoprotein nitroester reductases purified from two Pseudomonas species. J Bacteriol 179:6912-6920 (1997).
20. Jimenez JI, Minambres B, Garcia JL and Diaz E, Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440. Environ Microbiol 4:824-841 (2002).
21. Blehert DS, Fox BG and Chambliss GH, Cloning and sequence analysis of two Pseudomonas flavoprotein xenobiotic reductases. J Bacteriol 181:6254-6263 (1999).
22. Kohli RM and Massey V, The oxidative half-reaction of old yellow enzyme - The role of tyrosine 196. J Biol Chem 273:32763-32770 (1998).
23. Yoshida M, Muneyuki E and Hisabori T, ATP synthase - a marvellous rotary engine of the cell. Nat Rev Mol Cell Biol 2:669-677 (2001).
24. Santos PM, Benndorf D and Sa-Correia I, Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics. Proteomics 4:2640-2652 (2004).
25. Cohen GN, Microbial Biochemistry. Springer (2004).