-
1
-
-
0034056597
-
Temperature-regulated expression of bacterial virulence genes
-
Konkel ME, Tilly K, (2000) Temperature-regulated expression of bacterial virulence genes. Microbes Infect 2: 157-166.
-
(2000)
Microbes Infect
, vol.2
, pp. 157-166
-
-
Konkel, M.E.1
Tilly, K.2
-
2
-
-
84871502341
-
Hidden killers: human fungal infections
-
Brown GD, Denning DW, Gow NA, Levitz SM, Netea MG, et al. (2012) Hidden killers: human fungal infections. Sci Transl Med 4: 165rv113.
-
(2012)
Sci Transl Med
, vol.4
-
-
Brown, G.D.1
Denning, D.W.2
Gow, N.A.3
Levitz, S.M.4
Netea, M.G.5
-
3
-
-
34548654789
-
Dimorphism and virulence in fungi
-
Klein BS, Tebbets B, (2007) Dimorphism and virulence in fungi. Curr Opin Microbiol 10: 314-319.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 314-319
-
-
Klein, B.S.1
Tebbets, B.2
-
4
-
-
33846535287
-
Histoplasmosis: a clinical and laboratory update
-
Kauffman CA, (2007) Histoplasmosis: a clinical and laboratory update. Clin Microbiol Rev 20: 115-132.
-
(2007)
Clin Microbiol Rev
, vol.20
, pp. 115-132
-
-
Kauffman, C.A.1
-
5
-
-
42449127140
-
Temperature-induced switch to the pathogenic yeast form of Histoplasma capsulatum requires Ryp1, a conserved transcriptional regulator
-
Nguyen VQ, Sil A, (2008) Temperature-induced switch to the pathogenic yeast form of Histoplasma capsulatum requires Ryp1, a conserved transcriptional regulator. Proc Natl Acad Sci U S A 105: 4880-4885.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4880-4885
-
-
Nguyen, V.Q.1
Sil, A.2
-
6
-
-
55749094360
-
Conserved factors Ryp2 and Ryp3 control cell morphology and infectious spore formation in the fungal pathogen Histoplasma capsulatum
-
Webster RH, Sil A, (2008) Conserved factors Ryp2 and Ryp3 control cell morphology and infectious spore formation in the fungal pathogen Histoplasma capsulatum. Proc Natl Acad Sci U S A 105: 14573-14578.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 14573-14578
-
-
Webster, R.H.1
Sil, A.2
-
7
-
-
33748077784
-
Bistable expression of WOR1, a master regulator of white-opaque switching in Candida albicans
-
Huang G, Wang H, Chou S, Nie X, Chen J, et al. (2006) Bistable expression of WOR1, a master regulator of white-opaque switching in Candida albicans. Proc Natl Acad Sci U S A 103: 12813-12818.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 12813-12818
-
-
Huang, G.1
Wang, H.2
Chou, S.3
Nie, X.4
Chen, J.5
-
8
-
-
33750401562
-
TOS9 regulates white-opaque switching in Candida albicans
-
Srikantha T, Borneman AR, Daniels KJ, Pujol C, Wu W, et al. (2006) TOS9 regulates white-opaque switching in Candida albicans. Eukaryot Cell 5: 1674-1687.
-
(2006)
Eukaryot Cell
, vol.5
, pp. 1674-1687
-
-
Srikantha, T.1
Borneman, A.R.2
Daniels, K.J.3
Pujol, C.4
Wu, W.5
-
9
-
-
33748030763
-
Epigenetic properties of white-opaque switching in Candida albicans are based on a self-sustaining transcriptional feedback loop
-
Zordan RE, Galgoczy DJ, Johnson AD, (2006) Epigenetic properties of white-opaque switching in Candida albicans are based on a self-sustaining transcriptional feedback loop. Proc Natl Acad Sci U S A 103: 12807-12812.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 12807-12812
-
-
Zordan, R.E.1
Galgoczy, D.J.2
Johnson, A.D.3
-
10
-
-
84857403915
-
A conserved transcriptional regulator governs fungal morphology in widely diverged species
-
Cain CW, Lohse MB, Homann OR, Sil A, Johnson AD, (2012) A conserved transcriptional regulator governs fungal morphology in widely diverged species. Genetics 190: 511-521.
-
(2012)
Genetics
, vol.190
, pp. 511-521
-
-
Cain, C.W.1
Lohse, M.B.2
Homann, O.R.3
Sil, A.4
Johnson, A.D.5
-
11
-
-
84863687977
-
The Wor1-like protein Fgp1 regulates pathogenicity, toxin synthesis and reproduction in the phytopathogenic fungus Fusarium graminearum
-
doi:10.1371/journal.ppat.1002724
-
Jonkers W, Dong Y, Broz K, Kistler HC, (2012) The Wor1-like protein Fgp1 regulates pathogenicity, toxin synthesis and reproduction in the phytopathogenic fungus Fusarium graminearum. PLoS Pathog 8: e1002724 doi:10.1371/journal.ppat.1002724.
-
(2012)
PLoS Pathog
, vol.8
-
-
Jonkers, W.1
Dong, Y.2
Broz, K.3
Kistler, H.C.4
-
12
-
-
80051599105
-
The Botrytis cinerea Reg1 protein, a putative transcriptional regulator, is required for pathogenicity, conidiogenesis, and the production of secondary metabolites
-
Michielse CB, Becker M, Heller J, Moraga J, Collado IG, et al. (2011) The Botrytis cinerea Reg1 protein, a putative transcriptional regulator, is required for pathogenicity, conidiogenesis, and the production of secondary metabolites. Mol Plant Microbe Interact 24: 1074-1085.
-
(2011)
Mol Plant Microbe Interact
, vol.24
, pp. 1074-1085
-
-
Michielse, C.B.1
Becker, M.2
Heller, J.3
Moraga, J.4
Collado, I.G.5
-
13
-
-
73449103950
-
The nuclear protein Sge1 of Fusarium oxysporum is required for parasitic growth
-
doi:10.1371/journal.ppat.1000637
-
Michielse CB, van Wijk R, Reijnen L, Manders EM, Boas S, et al. (2009) The nuclear protein Sge1 of Fusarium oxysporum is required for parasitic growth. PLoS Pathog 5: e1000637 doi:10.1371/journal.ppat.1000637.
-
(2009)
PLoS Pathog
, vol.5
-
-
Michielse, C.B.1
van Wijk, R.2
Reijnen, L.3
Manders, E.M.4
Boas, S.5
-
14
-
-
77956271587
-
Distinct class of DNA-binding domains is exemplified by a master regulator of phenotypic switching in Candida albicans
-
Lohse MB, Zordan RE, Cain CW, Johnson AD, (2010) Distinct class of DNA-binding domains is exemplified by a master regulator of phenotypic switching in Candida albicans. Proc Natl Acad Sci U S A 107: 14105-14110.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 14105-14110
-
-
Lohse, M.B.1
Zordan, R.E.2
Cain, C.W.3
Johnson, A.D.4
-
15
-
-
0036392324
-
The veA gene activates sexual development in Aspergillus nidulans
-
Kim H, Han K, Kim K, Han D, Jahng K, et al. (2002) The veA gene activates sexual development in Aspergillus nidulans. Fungal Genet Biol 37: 72-80.
-
(2002)
Fungal Genet Biol
, vol.37
, pp. 72-80
-
-
Kim, H.1
Han, K.2
Kim, K.3
Han, D.4
Jahng, K.5
-
16
-
-
0013790534
-
Origins of translocations in Aspergillus nidulans
-
Kafer E, (1965) Origins of translocations in Aspergillus nidulans. Genetics 52: 217-232.
-
(1965)
Genetics
, vol.52
, pp. 217-232
-
-
Kafer, E.1
-
17
-
-
83355169636
-
Coordination of secondary metabolism and development in fungi: the velvet family of regulatory proteins
-
Bayram O, Braus GH, (2012) Coordination of secondary metabolism and development in fungi: the velvet family of regulatory proteins. FEMS Microbiol Rev 36: 1-24.
-
(2012)
FEMS Microbiol Rev
, vol.36
, pp. 1-24
-
-
Bayram, O.1
Braus, G.H.2
-
18
-
-
84866450421
-
VEA1 is required for cleistothecial formation and virulence in Histoplasma capsulatum
-
Laskowski-Peak MC, Calvo AM, Rohrssen J, Smulian AG, (2012) VEA1 is required for cleistothecial formation and virulence in Histoplasma capsulatum. Fungal Genet Biol 49: 838-846.
-
(2012)
Fungal Genet Biol
, vol.49
, pp. 838-846
-
-
Laskowski-Peak, M.C.1
Calvo, A.M.2
Rohrssen, J.3
Smulian, A.G.4
-
19
-
-
45849147020
-
VelB/VeA/LaeA complex coordinates light signal with fungal development and secondary metabolism
-
Bayram O, Krappmann S, Ni M, Bok JW, Helmstaedt K, et al. (2008) VelB/VeA/LaeA complex coordinates light signal with fungal development and secondary metabolism. Science 320: 1504-1506.
-
(2008)
Science
, vol.320
, pp. 1504-1506
-
-
Bayram, O.1
Krappmann, S.2
Ni, M.3
Bok, J.W.4
Helmstaedt, K.5
-
20
-
-
0037632910
-
Identifying phase-specific genes in the fungal pathogen Histoplasma capsulatum using a genomic shotgun microarray
-
Hwang L, Hocking-Murray D, Bahrami AK, Andersson M, Rine J, et al. (2003) Identifying phase-specific genes in the fungal pathogen Histoplasma capsulatum using a genomic shotgun microarray. Mol Biol Cell 14: 2314-2326.
-
(2003)
Mol Biol Cell
, vol.14
, pp. 2314-2326
-
-
Hwang, L.1
Hocking-Murray, D.2
Bahrami, A.K.3
Andersson, M.4
Rine, J.5
-
21
-
-
0034680884
-
Intracellular parasitism by Histoplasma capsulatum: fungal virulence and calcium dependence
-
Sebghati TS, Engle JT, Goldman WE, (2000) Intracellular parasitism by Histoplasma capsulatum: fungal virulence and calcium dependence. Science 290: 1368-1372.
-
(2000)
Science
, vol.290
, pp. 1368-1372
-
-
Sebghati, T.S.1
Engle, J.T.2
Goldman, W.E.3
-
22
-
-
34249909212
-
RNA interference-mediated silencing of the YPS3 gene of Histoplasma capsulatum reveals virulence defects
-
Bohse ML, Woods JP, (2007) RNA interference-mediated silencing of the YPS3 gene of Histoplasma capsulatum reveals virulence defects. Infect Immun 75: 2811-2817.
-
(2007)
Infect Immun
, vol.75
, pp. 2811-2817
-
-
Bohse, M.L.1
Woods, J.P.2
-
23
-
-
84863692804
-
Extracellular superoxide dismutase protects Histoplasma yeast cells from host-derived oxidative stress
-
doi:10.1371/journal.ppat.1002713
-
Youseff BH, Holbrook ED, Smolnycki KA, Rappleye CA, (2012) Extracellular superoxide dismutase protects Histoplasma yeast cells from host-derived oxidative stress. PLoS Pathog 8: e1002713 doi:10.1371/journal.ppat.1002713.
-
(2012)
PLoS Pathog
, vol.8
-
-
Youseff, B.H.1
Holbrook, E.D.2
Smolnycki, K.A.3
Rappleye, C.A.4
-
24
-
-
33750480548
-
An alpha-(1,4)-amylase is essential for alpha-(1,3)-glucan production and virulence in Histoplasma capsulatum
-
Marion CL, Rappleye CA, Engle JT, Goldman WE, (2006) An alpha-(1,4)-amylase is essential for alpha-(1,3)-glucan production and virulence in Histoplasma capsulatum. Mol Microbiol 62: 970-983.
-
(2006)
Mol Microbiol
, vol.62
, pp. 970-983
-
-
Marion, C.L.1
Rappleye, C.A.2
Engle, J.T.3
Goldman, W.E.4
-
25
-
-
79961103495
-
Discovery of a role for Hsp82 in Histoplasma virulence through a quantitative screen for macrophage lethality
-
Edwards JA, Zemska O, Rappleye CA, (2011) Discovery of a role for Hsp82 in Histoplasma virulence through a quantitative screen for macrophage lethality. Infect Immun 79: 3348-3357.
-
(2011)
Infect Immun
, vol.79
, pp. 3348-3357
-
-
Edwards, J.A.1
Zemska, O.2
Rappleye, C.A.3
-
26
-
-
79953675108
-
Definition of the extracellular proteome of pathogenic-phase Histoplasma capsulatum
-
Holbrook ED, Edwards JA, Youseff BH, Rappleye CA, (2011) Definition of the extracellular proteome of pathogenic-phase Histoplasma capsulatum. J Proteome Res 10: 1929-1943.
-
(2011)
J Proteome Res
, vol.10
, pp. 1929-1943
-
-
Holbrook, E.D.1
Edwards, J.A.2
Youseff, B.H.3
Rappleye, C.A.4
-
27
-
-
77957348024
-
The transcriptomes of two heritable cell types illuminate the circuit governing their differentiation
-
doi:10.1371/journal.pgen.1001070
-
Tuch BB, Mitrovich QM, Homann OR, Hernday AD, Monighetti CK, et al. (2010) The transcriptomes of two heritable cell types illuminate the circuit governing their differentiation. PLoS Genet 6: e1001070 doi:10.1371/journal.pgen.1001070.
-
(2010)
PLoS Genet
, vol.6
-
-
Tuch, B.B.1
Mitrovich, Q.M.2
Homann, O.R.3
Hernday, A.D.4
Monighetti, C.K.5
-
28
-
-
80053174446
-
Experimental annotation of the human pathogen Histoplasma capsulatum transcribed regions using high-resolution tiling arrays
-
Voorhies M, Foo CK, Sil A, (2011) Experimental annotation of the human pathogen Histoplasma capsulatum transcribed regions using high-resolution tiling arrays. BMC Microbiol 11: 216.
-
(2011)
BMC Microbiol
, vol.11
, pp. 216
-
-
Voorhies, M.1
Foo, C.K.2
Sil, A.3
-
29
-
-
0036089920
-
A regulator gene for acetate utilisation from Neurospora crassa
-
Bibbins M, Crepin VF, Cummings NJ, Mizote T, Baker K, et al. (2002) A regulator gene for acetate utilisation from Neurospora crassa. Mol Genet Genomics 267: 498-505.
-
(2002)
Mol Genet Genomics
, vol.267
, pp. 498-505
-
-
Bibbins, M.1
Crepin, V.F.2
Cummings, N.J.3
Mizote, T.4
Baker, K.5
-
30
-
-
0024345433
-
Isolation and analysis of the acetate regulatory gene, facB, from Aspergillus nidulans
-
Katz ME, Hynes MJ, (1989) Isolation and analysis of the acetate regulatory gene, facB, from Aspergillus nidulans. Mol Cell Biol 9: 5696-5701.
-
(1989)
Mol Cell Biol
, vol.9
, pp. 5696-5701
-
-
Katz, M.E.1
Hynes, M.J.2
-
31
-
-
68349098966
-
Physiological characterisation of acuB deletion in Aspergillus niger
-
Meijer S, de Jongh WA, Olsson L, Nielsen J, (2009) Physiological characterisation of acuB deletion in Aspergillus niger. Appl Microbiol Biotechnol 84: 157-167.
-
(2009)
Appl Microbiol Biotechnol
, vol.84
, pp. 157-167
-
-
Meijer, S.1
de Jongh, W.A.2
Olsson, L.3
Nielsen, J.4
-
32
-
-
0031259678
-
Molecular characterization of mutants of the acetate regulatory gene facB of Aspergillus nidulans
-
Todd RB, Kelly JM, Davis MA, Hynes MJ, (1997) Molecular characterization of mutants of the acetate regulatory gene facB of Aspergillus nidulans. Fungal Genet Biol 22: 92-102.
-
(1997)
Fungal Genet Biol
, vol.22
, pp. 92-102
-
-
Todd, R.B.1
Kelly, J.M.2
Davis, M.A.3
Hynes, M.J.4
-
33
-
-
0030998445
-
The acetate regulatory gene facB of Aspergillus nidulans encodes a Zn(II)2Cys6 transcriptional activator
-
Todd RB, Murphy RL, Martin HM, Sharp JA, Davis MA, et al. (1997) The acetate regulatory gene facB of Aspergillus nidulans encodes a Zn(II)2Cys6 transcriptional activator. Mol Gen Genet 254: 495-504.
-
(1997)
Mol Gen Genet
, vol.254
, pp. 495-504
-
-
Todd, R.B.1
Murphy, R.L.2
Martin, H.M.3
Sharp, J.A.4
Davis, M.A.5
-
34
-
-
33646229522
-
Practical strategies for discovering regulatory DNA sequence motifs
-
doi:10.1371/journal.pcbi.0020036
-
MacIsaac KD, Fraenkel E, (2006) Practical strategies for discovering regulatory DNA sequence motifs. PLoS Comput Biol 2: e36 doi:10.1371/journal.pcbi.0020036.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
MacIsaac, K.D.1
Fraenkel, E.2
-
35
-
-
33749236250
-
A fungal family of transcriptional regulators: the zinc cluster proteins
-
MacPherson S, Larochelle M, Turcotte B, (2006) A fungal family of transcriptional regulators: the zinc cluster proteins. Microbiol Mol Biol Rev 70: 583-604.
-
(2006)
Microbiol Mol Biol Rev
, vol.70
, pp. 583-604
-
-
MacPherson, S.1
Larochelle, M.2
Turcotte, B.3
-
36
-
-
0031164761
-
Evolution of a fungal regulatory gene family: the Zn(II)2Cys6 binuclear cluster DNA binding motif
-
Todd RB, Andrianopoulos A, (1997) Evolution of a fungal regulatory gene family: the Zn(II)2Cys6 binuclear cluster DNA binding motif. Fungal Genet Biol 21: 388-405.
-
(1997)
Fungal Genet Biol
, vol.21
, pp. 388-405
-
-
Todd, R.B.1
Andrianopoulos, A.2
-
37
-
-
33646253928
-
Global control of dimorphism and virulence in fungi
-
Nemecek JC, Wuthrich M, Klein BS, (2006) Global control of dimorphism and virulence in fungi. Science 312: 583-588.
-
(2006)
Science
, vol.312
, pp. 583-588
-
-
Nemecek, J.C.1
Wuthrich, M.2
Klein, B.S.3
-
38
-
-
41549112943
-
A novel regulator couples sporogenesis and trehalose biogenesis in Aspergillus nidulans
-
doi:10.1371/journal.pone.0000970
-
Ni M, Yu JH, (2007) A novel regulator couples sporogenesis and trehalose biogenesis in Aspergillus nidulans. PLoS One 2: e970 doi:10.1371/journal.pone.0000970.
-
(2007)
PLoS One
, vol.2
-
-
Ni, M.1
Yu, J.H.2
-
39
-
-
80052371641
-
Coevolution of morphology and virulence in Candida species
-
Thompson DS, Carlisle PL, Kadosh D, (2011) Coevolution of morphology and virulence in Candida species. Eukaryot Cell 10: 1173-1182.
-
(2011)
Eukaryot Cell
, vol.10
, pp. 1173-1182
-
-
Thompson, D.S.1
Carlisle, P.L.2
Kadosh, D.3
-
40
-
-
77954095162
-
Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity
-
Noble SM, French S, Kohn LA, Chen V, Johnson AD, (2010) Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity. Nat Genet 42: 590-598.
-
(2010)
Nat Genet
, vol.42
, pp. 590-598
-
-
Noble, S.M.1
French, S.2
Kohn, L.A.3
Chen, V.4
Johnson, A.D.5
-
41
-
-
37349082128
-
Introduction of DNA into yeast cells
-
Chapter 13: Unit13 17
-
Becker DM, Lundblad V, (2001) Introduction of DNA into yeast cells. Curr Protoc Mol Biol Chapter 13: Unit13 17.
-
(2001)
Curr Protoc Mol Biol
-
-
Becker, D.M.1
Lundblad, V.2
-
42
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi JL, Iyer VR, Brown PO, (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
43
-
-
33747894577
-
TM4 microarray software suite
-
Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V, et al. (2006) TM4 microarray software suite. Methods Enzymol 411: 134-193.
-
(2006)
Methods Enzymol
, vol.411
, pp. 134-193
-
-
Saeed, A.I.1
Bhagabati, N.K.2
Braisted, J.C.3
Liang, W.4
Sharov, V.5
-
44
-
-
0037311919
-
TM4: a free, open-source system for microarray data management and analysis
-
Saeed AI, Sharov V, White J, Li J, Liang W, et al. (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34: 374-378.
-
(2003)
Biotechniques
, vol.34
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liang, W.5
-
45
-
-
30744458073
-
A Bayesian method for analysing spotted microarray data
-
Meiklejohn CD, Townsend JP, (2005) A Bayesian method for analysing spotted microarray data. Brief Bioinform 6: 318-330.
-
(2005)
Brief Bioinform
, vol.6
, pp. 318-330
-
-
Meiklejohn, C.D.1
Townsend, J.P.2
-
46
-
-
75549090164
-
The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community
-
Arnaud MB, Chibucos MC, Costanzo MC, Crabtree J, Inglis DO, et al. (2010) The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community. Nucleic Acids Res 38: D420-D427.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Arnaud, M.B.1
Chibucos, M.C.2
Costanzo, M.C.3
Crabtree, J.4
Inglis, D.O.5
-
47
-
-
84862232618
-
The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata
-
Inglis DO, Arnaud MB, Binkley J, Shah P, Skrzypek MS, et al. (2012) The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata. Nucleic Acids Res 40: D667-D674.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Inglis, D.O.1
Arnaud, M.B.2
Binkley, J.3
Shah, P.4
Skrzypek, M.S.5
-
48
-
-
0031858914
-
SGD: Saccharomyces Genome Database
-
Cherry JM, Adler C, Ball C, Chervitz SA, Dwight SS, et al. (1998) SGD: Saccharomyces Genome Database. Nucleic Acids Res 26: 73-79.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 73-79
-
-
Cherry, J.M.1
Adler, C.2
Ball, C.3
Chervitz, S.A.4
Dwight, S.S.5
-
49
-
-
0034800374
-
InterProScan-an integration platform for the signature-recognition methods in InterPro
-
Zdobnov EM, Apweiler R, (2001) InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17: 847-848.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
50
-
-
12344269924
-
TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
-
Boyle EI, Weng S, Gollub J, Jin H, Botstein D, et al. (2004) TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20: 3710-3715.
-
(2004)
Bioinformatics
, vol.20
, pp. 3710-3715
-
-
Boyle, E.I.1
Weng, S.2
Gollub, J.3
Jin, H.4
Botstein, D.5
-
52
-
-
67249148362
-
Exploring network structure, dynamics, and function using NetworkX
-
In: Varoquaux G, Vaught T, Millman J, editors. Pasadena, CA USA
-
Hagberg AA, Schult DA, Swart PJ (2008) Exploring network structure, dynamics, and function using NetworkX. In: Varoquaux G, Vaught T, Millman J, editors. Proceedings of the 7th Python in Science Conference (SciPy2008). Pasadena, CA USA. pp. 11-15.
-
(2008)
Proceedings of the 7th Python in Science Conference (SciPy2008)
, pp. 11-15
-
-
Hagberg, A.A.1
Schult, D.A.2
Swart, P.J.3
-
53
-
-
77956054182
-
Genetics and molecular biology in Candida albicans
-
Hernday AD, Noble SM, Mitrovich QM, Johnson AD, (2010) Genetics and molecular biology in Candida albicans. Methods Enzymol 470: 737-758.
-
(2010)
Methods Enzymol
, vol.470
, pp. 737-758
-
-
Hernday, A.D.1
Noble, S.M.2
Mitrovich, Q.M.3
Johnson, A.D.4
-
54
-
-
40149098862
-
The evolution of combinatorial gene regulation in fungi
-
doi:10.1371/journal.pbio.0060038
-
Tuch BB, Galgoczy DJ, Hernday AD, Li H, Johnson AD, (2008) The evolution of combinatorial gene regulation in fungi. PLoS Biol 6: e38 doi:10.1371/journal.pbio.0060038.
-
(2008)
PLoS Biol
, vol.6
-
-
Tuch, B.B.1
Galgoczy, D.J.2
Hernday, A.D.3
Li, H.4
Johnson, A.D.5
-
55
-
-
84954964873
-
LOWESS: a program for smoothing scatterplots by robust locally weighted regression
-
Cleveland WS, (1981) LOWESS: a program for smoothing scatterplots by robust locally weighted regression. The American Statistician 35: 54.
-
(1981)
The American Statistician
, vol.35
, pp. 54
-
-
Cleveland, W.S.1
-
56
-
-
77951042893
-
MochiView: versatile software for genome browsing and DNA motif analysis
-
Homann OR, Johnson AD, (2010) MochiView: versatile software for genome browsing and DNA motif analysis. BMC Biol 8: 49.
-
(2010)
BMC Biol
, vol.8
, pp. 49
-
-
Homann, O.R.1
Johnson, A.D.2
-
57
-
-
2142657817
-
A combined transmembrane topology and signal peptide prediction method
-
Kall L, Krogh A, Sonnhammer EL, (2004) A combined transmembrane topology and signal peptide prediction method. J Mol Biol 338: 1027-1036.
-
(2004)
J Mol Biol
, vol.338
, pp. 1027-1036
-
-
Kall, L.1
Krogh, A.2
Sonnhammer, E.L.3
-
58
-
-
0035228215
-
BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
-
Liu X, Brutlag DL, Liu JS, (2001) BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pac Symp Biocomput pp. 127-138.
-
(2001)
Pac Symp Biocomput
, pp. 127-138
-
-
Liu, X.1
Brutlag, D.L.2
Liu, J.S.3
-
59
-
-
0031877016
-
Combining evidence using p-values: application to sequence homology searches
-
Bailey TL, Gribskov M, (1998) Combining evidence using p-values: application to sequence homology searches. Bioinformatics 14: 48-54.
-
(1998)
Bioinformatics
, vol.14
, pp. 48-54
-
-
Bailey, T.L.1
Gribskov, M.2
-
60
-
-
67849122320
-
MEME SUITE: tools for motif discovery and searching
-
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, et al. (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37: W202-W208.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
|