Insights into enzyme secretion by filamentous fungi: Comparative proteome analysis of Trichoderma reesei grown on different carbon sources

Journal of Proteomics

Volumn 89, Issue , 2013, Pages 191-201

  Jun, He ^a   Guangye, Han ^b   Daiwen, Chen ^a  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTE OF BOTANY   (China)

Author keywords

Carbon source; Enzyme; Proteome; Regulation; Trichoderma reesei

Indexed keywords

CARBON; CELLULASE; CELLULOSE 1,4 BETA CELLOBIOSIDASE; D XYLOSE REDUCTASE; OXIDOREDUCTASE; PROTEOME; UNCLASSIFIED DRUG; XYLOSE; ALDEHYDE REDUCTASE; FUNGAL PROTEIN; LACTOSE;

ARTICLE; CARBON METABOLISM; CARBON SOURCE; CATABOLISM; CITRIC ACID CYCLE; CONTROLLED STUDY; ENZYME RELEASE; ENZYME SYNTHESIS; FUNGUS GROWTH; GLYCOLYSIS; HYPOCREA JECORINA; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEOMICS; COMPARATIVE STUDY; ENZYMOLOGY; GROWTH, DEVELOPMENT AND AGING; METABOLISM; SECRETION (PROCESS); TRICHODERMA;

ALDEHYDE REDUCTASE; CARBOHYDRATE DEHYDROGENASES; CELLULOSE 1,4-BETA-CELLOBIOSIDASE; FUNGAL PROTEINS; LACTOSE; PROTEOME; TRICHODERMA; XYLOSE;

EID: 84880365451     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2013.06.014     Document Type: Article

References (42)

1. Patel-Predd P. Overcoming the hurdles to producing ethanol from cellulose. Environ Sci Technol 2006, 40:4052-4053.
2. Durand H., Clanet M., Tiraby G. Genetic improvement of Trichoderma reesei for large scale cellulase production. Enzyme Microbiol Technol 1988, 10:341-345.
3. Zaldivar J., Nielsen J., Olsson L. Fuel ethanol production from lignocellulose: a challenge for metabolic engineering and process integration. Appl Microbiol Biotechnol 2001, 56:17-34.
4. Muthuvelayudham R., Viruthagiri T. Fermentative production and kinetics of cellulose protein on Trichoderma reesei using sugar cane bagasse and rice straw. Afri J Biotechnol 2006, 5:1873-1881.
5. Juhasz T., Szengyel Z., Reczey K., Siika-Aho M., Viikari L. Characterization of cellulases and hemicellulases produced by Trichoderma reesei on various carbon sources. Process Biochem 2005, 40:3519-3525.
6. Foreman P.K., Brown D., Dankmeyer L., Dean R., Diener S., Dunn-Coleman N.S., et al. Transcriptional regulation of biomass-degrading enzymes in the filamentous fungus Trichoderma reesei. J Biol Chem 2003, 278:31988-31997.
7. Stricker A.R., Mach R.L., de Graaff L.H. Regulation of transcription of cellulase- and hemicellulase-encoding genes in Aspergillus niger and Hypocrea jecorina (Trichoderma reesei). Appl Microbiol Biotechnol 2008, 78:211-220.
8. Saloheimo M., Nakari-Setala T., Tenkanen M., Penttila M. cDNA cloning of a Trichoderma reesei cellulase and demonstration of endoglucanase activity by expression in yeast. Eur J Biochem 1997, 249:584-595.
9. Olsson L., Christensen T.M.I.E., Hansen K.P., Palmqvist E.A. Influence of the carbon source on production of cellulases, hemicellulases and pectinases by Trichoderma reesei RUT C-30. Enzyme Microb Technol 2003, 33:612-619.
10. Nogawa M., Goto M., Okada H., Morikawa Y. l-Sorbose induces cellulase gene transcription in the cellulolytic fungus Trichoderma reesei. Curr Genet 2001, 38:329-334.
11. Penttila M., Saloheimo A., Ilmen M., Salminen E., Knowles J. Regulation of the expression of Trichoderma cellulases at mRNA and promoter level. Proceedings of the 2nd TRICEL Symposium on Trichoderma reesei cellulases and other hydrolases 1993, 189-197. Foundation for Biotechnical and Industrial Fermentation Research, Espoo, Finland. P. Suominen, T. Reinikainen (Eds.).
12. Martinez D., Berka R.M., Henrissat B., Saloheimo M., Arvas M., Baker S.E., et al. Genome sequencing and analysis of the biomass degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nat Biotechnol 2008, 26:553-560.
13. Margolles-Clark E., Tenkanen M., Nakari-Setala T., Penttila M. Cloning of genes encoding alpha-l-arabinofuranosidase and beta-xylosidase from Trichoderma reesei by expression in Saccharomyces cerevisiae. Appl Environ Microbiol 1996, 62:3840-3846.
14. Kristufek D., Zeilinger S., Kubicek C.P. Regulation of β-xylosidase formation by xylose in Trichoderma reesei. Appl Microbiol Biotechnol 1995, 42:713-717.
15. Xiong H., Turunen O., Pastinen O., Leisola M., Von Weymarn N. Improved xylanase production by Trichoderma reesei grown on l-arabinose and lactose or d-glucose mixtures. Appl Microbiol Biotechnol 2004, 64:353-358.
16. Royer J.C., Nakas J.P. Interrelationships of xylanase induction and cellulase induction of Trichoderma longibrachiatum. Appl Environ Microbiol 1990, 56:2535-2539.
17. Purkarthofer H., Steiner W. Induction of endo-β-xylanase in the fungus Thermomyces lanuginosus. Enzyme Microb Technol 1995, 17:114-118.
18. Kolkman A., Olsthoorn M.M.A., Heeremans C.E.M., Heck A.J.R., Slijper M. Comparative proteome analysis of Saccharomyces cerevisiae grown in chemostat cultures limited for glucose or ethanol. Mol Cellular Proteomics 2005, 4:1-11.
19. Mach R.L., Schindler M., Kubicek C.P. Transformation of Trichoderma reesei based on hygromycin B resistance using homologous expression signals. Curr Genet 1994, 25:567-570.
20. Gruber F., Visser J., Kubicek C.P., de Graaf L.H. Cloning of the Trichoderma reesei pyrG-gene and its use as a homologous marker for a high-frequency transformation system. Curr Genet 1990, 18:447-451.
21. Penttila M., Nevalainen H., Rattö M., Salminen E., Knowles J. A versatile transformation system for the cellulolytic filamentous fungus Trichoderma reesei. Gene 1987, 61:155-164.
22. Hartner F.S., Ruth C., Langenegger D., Johnson S.N., Hyka P., Lin-Cereghino G.P., et al. Promoter library designed for fine-tuned gene expression in Pichia pastoris. Nucleic Acids Res 2008, 36:e76.
23. Zhu T., Guo M., Tang Z., Zhuang Y., Chu J., Zhang S. Efficient generation of multi-copy strains for optimizing secretory expression of porcine insulin precursor in yeast Pichia pastoris. J Appl Microbiol 2009, 107:954-963.
24. Pfaffl M.W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 2001, 29:e45.
25. Ghose T.K. Measurement of cellulase activities. Pure Appl Chem 1987, 59:257-268.
26. Bailey M.J., Biely P., Poutanen K. Interlaboratory testing of methods for assay of xylanase activity. J Biotechnol 1992, 23:257-270.
27. Miller G.L., Blum R., Glennon W.E., Burton A.L. Measurement of carboxymethylcellulase activity. Anal Biochem 1960, 2:127-132.
28. Jun H., Kieselbach T., Jönsson L.J. Enzyme production by filamentous fungi: analysis of the secretome of Trichoderma reesei grown on unconventional carbon source. Microbial Cell Fact 2011, 10:68.
29. Fowler T., Brown R.D. The bgl1 gene encoding extracellular β-glucosidase from Trichoderma reesei is required for rapid induction of the cellulose complex. Mol Microbiol 1992, 6:3225-3235.
30. Seiboth B., Hartl L., Salovuori N., Lanthaler K., Robson G.D., Vehmaanpera J., et al. Role of the bga1-encoded extracellular-galactosidase of Hypocrea jecorina in cellulase induction by lactose. Appl Environ Microbiol 2005, 71:851-857.
31. Herpoel-Gimbert I., Margeot A., Dolla A., Jan G., Molle D., Lignon S., et al. Comparative secretome analyses of two Trichoderma reesei RUT-C30 and CL847 hypersecretory strains. Biotechnol Biofuels 2008, 1:18.
32. Webb S.R., Lee H. Regulation of d-xylose utilization by hexoses in pentose-fermenting yeasts. Biotechnol Adv 1990, 8:685-697.
33. Seiboth B., Gamaut C., Pail M., Hartl L., Kubicek C.P. The d-xylose reductase of Hypocrea jecorina is the major aldose reductase in pentose and d-galactose catabolism and necessary for β-galactose and cellulase induction by lactose. Mol Microbiol 2007, 66:890-900.
34. Holden H.M., Rayment I., Thoden J.B. Structure and function of enzymes of the Leloir pathway for galactose metabolism. J Biol Chem 2003, 278:43885-43888.
35. Seiboth B., Hartl L., Pail M., Fekete E., Karaffa L., Kubicek C.P. The galactokinase of Hypocrea jecorina is essential for cellulase induction by lactose but dispensable for growth on d-galactose. Mol Microbiol 2004, 51:1015-1025.
36. Bouffard G.G., Rudd K.E., Adhya S.L. Dependence of lactose metabolism upon mutarotase encoded in the gal operon in Escherichia coli. J Mol Biol 1994, 244:269-278.
37. Fekete E., Seiboth B., Kubicek C., Szentirmai A., Karaffa L. Lack of aldose 1-epimerase in Hypocrea jecorina (anamorph Trichoderma reesei): a key to cellulase gene expression on lactose. Proc Natl Acad Sci U S A 2008, 105:7141-7146.
38. Greiner E.F., Guppy M., Brand K. Glucose is essential for proliferation and the glycolytic enzymes induction that provokes a transition to glycolytic energy production. J Biol Chem 1994, 269:31484-31490.
39. Lu X., Sun J.B., Nimtz M., Wissing J., Zeng A.P., Rinas U. The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate. Microbial Cell Fact 2010, 9:23.
40. Walfridsson M., Anderlund M., Bao X., Haha-Hägerdal B. Expression of different levels of enzymes from the Pichia stipitis XYL1 and XYL2 genes in Saccharomyces cerevisiae and its effects on product formation during xylose utilization. Appl Microbiol Biotechnol 1997, 48:218-224.
41. Jun H., Jiayi C. Metabolic engineering of Saccharomyces cerevisae for increased bioconversion of lignocellulose to ethanol. Indian J Microbiol 2012, 52:442-448.
42. Karaffa L., Fekete E., Gamauf C., Szentirmai A., Kubicek C.P., Swiboth d-Galactose induces cellulase gene expression in Hypocrea jecorina at low growth rates. Microbiol 2006, 152:1507-1514.