Rotavirus genotypes in children in the community with diarrhea in Madagascar

Journal of Medical Virology

Volumn 85, Issue 9, 2013, Pages 1652-1660

  Razafindratsimandresy, Richter ^a   Heraud, Jean Michel ^a   Ramarokoto, Charles Emile ^a   Rabemanantsoa, Sendraharimanana ^a   Randremanana, Rindra ^a   Andriamamonjy, Nelson Seta ^a   Richard, Vincent ^a   Reynes, Jean Marc ^a  

^a INSTITUT PASTEUR DE MADAGASCAR   (Madagascar)

Author keywords

Community; Genotypes; Madagascar; Rotavirus

Indexed keywords

PROTEIN VP4; PROTEIN VP7;

ACUTE DIARRHEA; ANTIGEN DETECTION; ARTICLE; CHILD; CHILDHOOD DISEASE; COMMUNITY; ENZYME LINKED IMMUNOSORBENT ASSAY; FECES ANALYSIS; GENE AMPLIFICATION; GENE INSERTION; GENETIC REASSORTMENT; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HUMAN; MADAGASCAR; MAJOR CLINICAL STUDY; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRESCHOOL CHILD; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; ROTAVIRUS; VIRUS STRAIN;

COMMUNITY; GENOTYPES; MADAGASCAR; ROTAVIRUS;

ANTIGENS, VIRAL; CAPSID PROTEINS; CHILD, PRESCHOOL; CLUSTER ANALYSIS; DIARRHEA; FECES; FEMALE; GENETIC VARIATION; GENOTYPE; HUMANS; INFANT; INFANT, NEWBORN; MADAGASCAR; MALE; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; PHYLOGENY; PREVALENCE; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA;

FELIDAE; ROTAVIRUS; SUS;

EID: 84880329081     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.23631     Document Type: Article

References (62)

1. Adiku TK, Dove W, Grosjean P, Combe P, Nakagomi T, Nakagomi O, Hart CA, Cunliffe NA. 2010. Molecular characterization of rotavirus strains circulating among children with acute gastroenteritis in Madagascar during 2004-2005. J Infect Dis 202:S175-S179.
2. Arista S, Giammanco GM, De Grazia S, Ramirez S, Lo Biundo C, Colomba C, Cascio A, Martella V. 2006. Heterogeneity and temporal dynamics of evolution of G1 human rotaviruses in a settled population. J Virol 80:10724-10733.
3. Arista S, Vizzi E, Alaimo C, Palermo D, Cascio A. 1999. Identification of human rotavirus strains with the P[14] genotype by PCR. J Clin Microbiol 37:2706-2708.
4. Armah GE, Steele AD, Esona MD, Akran VA, Nimzing L, Pennap G. 2010. Diversity of rotavirus strains circulating in west Africa from 1996 to 2000. J Infect Dis 202:S64-S71.
5. Banerjee I, Ramani S, Primrose B, Iturriza-Gomara M, Gray JJ, Brown DW, Kang G. 2007. Modification of rotavirus multiplex RT-PCR for the detection of G12 strains based on characterization of emerging G12 rotavirus strains from South India. J Med Virol 79:1413-1421.
6. Banerjee I, Ramani S, Primrose B, Moses P, Iturriza-Gomara M, Gray JJ, Jaffar S, Monica B, Muliyil JP, Brown DW, Estes MK, Kang G. 2006. Comparative study of the epidemiology of rotavirus in children from a community-based birth cohort and a hospital in South India. J Clin Microbiol 44:2468-2474.
7. Banyai K, Martella V, Jakab F, Melegh B, Szucs G. 2004. Sequencing and phylogenetic analysis of human genotype P[6] rotavirus strains detected in Hungary provides evidence for genetic heterogeneity within the P[6] VP4 gene. J Clin Microbiol 42:4338-4343.
8. Barman P, Ghosh S, Samajdar S, Mitra U, Dutta P, Bhattacharya SK, Krishnan T, Kobayashi N, Naik TN. 2006. RT-PCR based diagnosis revealed importance of human group B rotavirus infection in childhood diarrhoea. J Clin Virol 36:222-227.
9. Bishop RF, Unicomb LE, Barnes GL. 1991. Epidemiology of rotavirus serotypes in Melbourne, Australia, from 1973 to 1989. J Clin Microbiol 29:862-868.
10. Bok K, Palacios G, Sijvarger K, Matson D, Gomez J. 2001. Emergence of G9 P[6] human rotaviruses in Argentina: Phylogenetic relationships among G9 strains. J Clin Microbiol 39:4020-4025.
11. Castello AA, Arguelles MH, Villegas GA, Olthoff A, Glikmann G. 2002. Incidence and prevalence of human group C rotavirus infections in Argentina. J Med Virol 67:106-112.
12. Coluchi N, Munford V, Manzur J, Vazquez C, Escobar M, Weber E, Marmol P, Racz ML. 2002. Detection, subgroup specificity, and genotype diversity of rotavirus strains in children with acute diarrhea in Paraguay. J Clin Microbiol 40:1709-1714.
13. Cubitt WD, Steele AD, Iturriza-Gomara M. 2000. Characterisation of rotaviruses from children treated at a London hospital during 1996: Emergence of strains G9P2A[6] and G3P2A[6]. J Med Virol 61:150-154.
14. Cunliffe NA, Ngwira BM, Dove W, Nakagomi O, Nakagomi T, Perez A, Hart CA, Kazembe PN, Mwansambo CC. 2009. Serotype G12 rotaviruses, Lilongwe, Malawi. Emerg Infect Dis 15:87-90.
15. De Grazia S, Giammanco GM, Martella V, Ramirez S, Colomba C, Cascio A, Arista S. 2008. Rare AU-1-like G3P[9] human rotaviruses with a Kun-like NSP4 gene detected in children with diarrhea in Italy. J Clin Microbiol 46:357-360.
16. De Vos B, Han HH, Bouckenooghe A, Debrus S, Gillard P, Ward R, Cheuvart B. 2009. Live attenuated human rotavirus vaccine, RIX4414, provides clinical protection in infants against rotavirus strains with and without shared G and P genotypes: Integrated analysis of randomized controlled trials. Pediatr Infect Dis J 28:261-266.
17. Desselberger U. 1996. Genome rearrangements of rotaviruses. Adv Virus Res 46:69-95.
18. Desselberger U, Manktelow E, Li W, Cheung W, Iturriza-Gomara M, Gray J. 2009. Rotaviruses and rotavirus vaccines. Br Med Bull 90:37-51.
19. Espinola EE, Parra GI, Russomando G, Arbiza J. 2008. Genetic diversity of the VP4 and VP7 genes affects the genotyping of rotaviruses: Analysis of Paraguayan strains. Infect Genet Evol 8:94-99.
20. Estes MK, Kapikian AZ. 2007. Rotaviruses and their replication. In: Fields BN, Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE, editors. Fields virology. 5th ed. Philadelphia, PA: Lippincott, Williams and Wilkins. pp 1917-1974.
21. Fischer TK, Aaby P, Mølbak K, Rodrigues A. 2010. Rotavirus disease in Guinea-Bissau, west Africa: A review of longitudinal community and hospital studies. J Infect Dis 202:S239-S242.
22. Gentsch JR, Glass RI, Woods P, Gouvea V, Gorziglia M, Flores J, Das BK, Bhan MK. 1992. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 30:1365-1373.
23. Gentsch JR, Laird AR, Bielfelt B, Griffin DD, Banyai K, Ramachandran M, Jain V, Cunliffe NA, Nakagomi O, Kirkwood CD, Fischer TK, Parashar UD, Bresee JS, Jiang B, Glass RI. 2005. Serotype diversity and reassortment between human and animal rotavirus strains: Implications for rotavirus vaccine programs. J Infect Dis 192:S146-S159.
24. Glass RI, Parashar UD, Bresee JS, Turcios R, Fischer TK, Widdowson MA, Jiang B, Gentsch JR. 2006. Rotavirus vaccines: Current prospects and future challenges. Lancet 368:323-332.
25. Gouvea V, Glass RI, Woods P, Taniguchi K, Clark HF, Forrester B, Fang ZY. 1990. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 28:276-282.
26. Iturriza-Gomara M, Cubitt D, Steele D, Green J, Brown D, Kang G, Desselberger U, Gray J. 2000a. Characterisation of rotavirus G9 strains isolated in the UK between 1995 and 1998. J Med Virol 61:510-517.
27. Iturriza-Gomara M, Green J, Brown DW, Desselberger U, Gray JJ. 2000b. Diversity within the VP4 gene of rotavirus P[8] strains: implications for reverse transcription-PCR genotyping. J Clin Microbiol 38:898-901.
28. Iturriza-Gomara M, Isherwood B, Desselberger U, Gray J. 2001. Reassortment in vivo: Driving force for diversity of human rotavirus strains isolated in the United Kingdom between 1995 and 1999. J Virol 75:3696-3705.
29. Iturriza-Gomara M, Kang G, Gray J. 2004. Rotavirus genotyping: Keeping up with an evolving population of human rotaviruses. J Clin Virol 31:259-265.
30. Kabue JP, Peenze I, de Beer M, Esona MD, Lunfungula C, Biamungu M, Simba TR, Muyembe Tamfum JJ, Steele AD. 2010. Characterization of human rotavirus recovered from children with acute diarrhea in Kinshasa, Democratic Republic of Congo. J Infect Dis 202:S193-S197.
31. Kapikian AZ. 2001. A rotavirus vaccine for prevention of severe diarrhoea of infants and young children: Development, utilization, and withdrawal. Novartis Found Symp 238:153-171 discussion 171-159.
32. Khamrin P, Maneekarn N, Peerakome S, Tonusin S, Phan TG, Okitsu S, Ushijima H. 2007. Molecular characterization of rare G3P[9] rotavirus strains isolated from children hospitalized with acute gastroenteritis. J Med Virol 79:843-851.
33. Kheyami AM, Nakagomi T, Nakagomi O, Dove W, Hart CA, Cunliffe NA. 2008. Molecular epidemiology of rotavirus diarrhea among children in Saudi Arabia: first detection of G9 and G12 strains. J Clin Microbiol 46:1185-1191.
34. Kirkwood CD. 2010. Genetic and antigenic diversity of human rotaviruses: Potential impact on vaccination programs. J Infect Dis 202:S43-S48.
35. Leite JP, Carvalho-Costa FA, Linhares AC. 2008. Group A rotavirus genotypes and the ongoing Brazilian experience: A review. Mem Inst Oswaldo Cruz 103:745-753.
36. Martella V, Banyai K, Matthijnssens J, Buonavoglia C, Ciarlet M. 2010. Zoonotic aspects of rotaviruses. Vet Microbiol 140:246-255.
37. Matthijnssens J, Bilcke J, Ciarlet M, Martella V, Banyai K, Rahman M, Zeller M, Beutels P, Van Damme P, Van Ranst M. 2009. Rotavirus disease and vaccination: Impact on genotype diversity. Future Microbiol 4:1303-1316.
38. Matthijnssens J, Ciarlet M, McDonald SM, Attoui H, Banyai K, Brister JR, Buesa J, Esona MD, Estes MK, Gentsch JR, Iturriza-Gomara M, Johne R, Kirkwood CD, Martella V, Mertens PP, Nakagomi O, Parreno V, Rahman M, Ruggeri FM, Saif LJ, Santos N, Steyer A, Taniguchi K, Patton JT, Desselberger U, Van Ranst M. 2011. Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch Virol 156:1397-1413.
39. Matthijnssens J, Ciarlet M, Rahman M, Attoui H, Banyai K, Estes MK, Gentsch JR, Iturriza-Gomara M, Kirkwood CD, Martella V, Mertens PP, Nakagomi O, Patton JT, Ruggeri FM, Saif LJ, Santos N, Steyer A, Taniguchi K, Desselberger U, Van Ranst M. 2008. Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Arch Virol 153:1621-1629.
40. Mphahlele MJ, Peenze I, Steele AD. 1999. Rotavirus strains bearing the VP4P[14] genotype recovered from South African children with diarrhoea. Arch Virol 144:1027-1034.
41. Mulherin E, Bryan J, Beltman M, O'Grady L, Pidgeon E, Garon L, Lloyd A, Bainbridge J, O'Shea H, Whyte P, Fanning S. 2008. Molecular characterisation of a bovine-like rotavirus detected from a giraffe. BMC Vet Res 4:46.
42. Nitiema LW, Nordgren J, Ouermi D, Dianou D, Traore AS, Svensson L, Simpore J. 2011. Burden of rotavirus and other enteropathogens among children with diarrhea in Burkina Faso. Int J Infect Dis 15:e646-e652.
43. Nordgren J, Nitiema LW, Sharma S, Ouermi D, Traore AS, Simpore J, Svensson L. 2012. Emergence of unusual G6P[6] rotaviruses in children, Burkina Faso, 2009-2010. Emerg Infect Dis 18:589-597.
44. Oluwatoyin Japhet M, Adeyemi Adesina O, Famurewa O, Svensson L, Nordgren J. 2012. Molecular epidemiology of rotavirus and norovirus in Ile-Ife, Nigeria: High prevalence of G12P[8] rotavirus strains and detection of a rare norovirus genotype. J Med Virol 84:1489-1496.
45. Page N, Esona M, Armah G, Nyangao J, Mwenda J, Sebunya T, Basu G, Pyndiah N, Potgieter N, Geyer A, Steele AD. 2010. Emergence and characterization of serotype G9 rotavirus strains from Africa. J Infect Dis 202:S55-63.
46. Parashar UD, Burton A, Lanata C, Boschi-Pinto C, Shibuya K, Steele D, Birmingham M, Glass RI. 2009. Global mortality associated with rotavirus disease among children in 2004. J Infect Dis 200:S9-S15.
47. Park S, Oh S, Lee J, Park G, Choi S, Chae Y, Kim H. 2011. Genotypes of rotavirus associated with acute gastroenteritis in Seoul, Korea. Microbiol Immunol 55:641-644.
48. Parra GI, Espinola EE. 2006. Nucleotide mismatches between the VP7 gene and the primer are associated with genotyping failure of a specific lineage from G1 rotavirus strains. Virol J 3:35.
49. Phan TG, Khamrin P, Trinh DQ, Dey SK, Yagyu F, Okitsu S, Nishio O, Ushijima H. 2007. Genetic characterization of group A rotavirus strains circulating among children with acute gastroenteritis in Japan in 2004-2005. Infect Genet Evol 7:247-253.
50. Rahman M, Matthijnssens J, Yang X, Delbeke T, Arijs I, Taniguchi K, Iturriza-Gomara M, Iftekharuddin N, Azim T, Van Ranst M. 2007. Evolutionary history and global spread of the emerging g12 human rotaviruses. J Virol 81:2382-2390.
51. Ramachandran M, Das BK, Vij A, Kumar R, Bhambal SS, Kesari N, Rawat H, Bahl L, Thakur S, Woods PA, Glass RI, Bhan MK, Gentsch JR. 1996. Unusual diversity of human rotavirus G and P genotypes in India. J Clin Microbiol 34:436-439.
52. Ramani S, Kang G. 2007. Burden of disease & molecular epidemiology of group A rotavirus infections in India. Indian J Med Res 125:619-632.
53. Randremanana R, Randrianirina F, Gousseff M, Dubois N, Razafindratsimandresy R, Hariniana ER, Garin B, Randriamanantena A, Rakotonirina HC, Ramparany L, Ramarokoto CE, Rakotomanana F, Ratsitorahina M, Rajatonirina S, Talarmin A, Richard V. 2012. Case-control study of the etiology of infant diarrheal disease in 14 districts in Madagascar. PLoS ONE 7:e44533.
54. Randrianasolo L, Raoelina Y, Ratsitorahina M, Ravolomanana L, Andriamandimby S, Heraud JM, Rakotomanana F, Ramanjato R, Randrianarivo-Solofoniaina AE, Richard V. 2010. Sentinel surveillance system for early outbreak detection in Madagascar. BMC Public Health 10:31.
55. Rodrigues F, Iturriza-Gomara M, Gray J, Januario L, Lemos L. 2007. Epidemiology of rotavirus in Portugal: G9 as a major cause of diarrhoea in non-hospitalised children. J Clin Virol 40:214-217.
56. Santos N, Hoshino Y. 2005. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29-56.
57. Santos N, Volotao EM, Soares CC, Albuquerque MC, da Silva FM, de Carvalho TR, Pereira CF, Chizhikov V, Hoshino Y. 2001. Rotavirus strains bearing genotype G9 or P[9] recovered from Brazilian children with diarrhea from 1997 to 1999. J Clin Microbiol 39:1157-1160.
58. Steele AD, Ivanoff B. 2003. Rotavirus strains circulating in Africa during 1996-1999: Emergence of G9 strains and P[6] strains. Vaccine 21:361-367.
59. Stupka JA, Carvalho P, Amarilla AA, Massana M, Parra GI. 2009. National rotavirus surveillance in Argentina: High incidence of G9P[8] strains and detection of G4P[6] strains with porcine characteristics. Infect Genet Evol 9:1225-1231.
60. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEG A4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599.
61. Taniguchi K, Nishikawa K, Urasawa T, Urasawa S, Midthun K, Kapikian AZ, Gorziglia M. 1989. Complete nucleotide sequence of the gene encoding VP4 of a human rotavirus (strain K8) which has unique VP4 neutralization epitopes. J Virol 63:4101-4106.
62. Vesikari T, Karvonen A, Prymula R, Schuster V, Tejedor JC, Cohen R, Meurice F, Han HH, Damaso S, Bouckenooghe A. 2007. Efficacy of human rotavirus vaccine against rotavirus gastroenteritis during the first 2 years of life in European infants: Randomised, double-blind controlled study. Lancet 370:1757-1763.