RT-PCR based diagnosis revealed importance of human group B rotavirus infection in childhood diarrhoea

Journal of Clinical Virology

Volumn 36, Issue 3, 2006, Pages 222-227

  Barman, P ^a   Ghosh, S ^a   Samajdar, S ^a   Mitra, U ^a   Dutta, P ^a   Bhattacharya, S K ^a   Krishnan, T ^a   Kobayashi, N ^b   Naik, T N ^a  

^a NATIONAL INSTITUTE OF CHOLERA AND ENTERIC DISEASES   (India)

^b SAPPORO MEDICAL UNIVERSITY SCHOOL OF MEDICINE   (Japan)

Author keywords

Children; Human group B rotavirus; Nonisotopic dot blot hybridization; PAGE; RT PCR; Sequence analysis

Indexed keywords

BIOTIN; PSORALEN; VIRUS RNA;

ARTICLE; CHILDHOOD DISEASE; DIARRHEA; DOT HYBRIDIZATION; ELECTROPHORESIS; GROUP B ROTAVIRUS; HEALTH SURVEY; HUMAN; INDIA; INFANT; MAJOR CLINICAL STUDY; MOLECULAR PROBE; NEWBORN; NUCLEOTIDE SEQUENCE; PEDIATRIC HOSPITAL; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRESCHOOL CHILD; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ANALYSIS; ROTAVIRUS; VIRUS DETECTION; VIRUS INFECTION;

CHILD, PRESCHOOL; DIARRHEA; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HUMANS; INCIDENCE; INDIA; INFANT; INFANT, NEWBORN; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA;

EID: 33745141545     PISSN: 13866532     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jcv.2006.02.009     Document Type: Article

References (30)

1. Ahmed M.U., Kobayashi N., Wakuda M., Sanekata T., Taniguchi K., Kader A., et al. Genetic analysis of group B human rotaviruses detected in Bangladesh in 2000 and 2001. J Med Virol 72 (2004) 149-155
2. Alfieri A.A., Leite J.P., Alfieri A.F., Jiang B., Glass R.I., and Gentsch J.R. Detection of field isolates of human and animal group C rotavirus by reverse transcription-polymerase chain reaction and digoxigenin-labeled oligonucleotide probes. J Virol Methods 83 (1999) 35-43
3. Barman P., Ghosh S., Das S., Varghese V., Chaudhuri S., Sarkar S., et al. Sequencing and sequence analysis of VP7 and NSP5 genes reveal emergence of a new genotype of bovine group B rotaviruses in India. J Clin Microbiol 42 (2004) 2816-2818
4. Chang K.O., Nielsen P.R., Ward L.A., and Saif L.J. Dual infection of gnotobiotic calves with bovine strains of group A and porcine-like group C rotaviruses influences pathogenesis of the group C rotavirus. J Virol 73 (1999) 9284-9293
5. Dai G.Z., Sun M.S., Liu S.Q., Ding X.F., Chen Y.D., Wang L.C., et al. First report of an epidemic of diarrhoea in human neonates involving the new rotavirus and biological characteristics of the epidemic virus strain (KMB/R85). J Med Virol 22 (1987) 365-373
6. Das S., Sen A., Uma G., Varghese V., Chaudhury S., Bhattacharya S.K., et al. Genomic diversity of group A rotavirus strains infecting humans in eastern India. J Clin Microbiol 40 (2002) 146-149
7. Eiden J., Vonderfecht S., Theil K., Torres-Medina A., and Yolken R.H. Genetic and antigenic relatedness of human and animal strains of antigenically distinct rotaviruses. J Infect Dis 154 (1986) 972-982
8. Eiden J.J., Firoozmand F., Sato S., Vonderfecht S.L., Yin F.Z., and Yolken R.H. Detection of group B rotavirus in fecal specimens by dot hybridization with a cloned cDNA probe. J Clin Microbiol 27 (1989) 422-426
9. Fang Z.Y., Ye Q., Ho M.S., Dong H., Qing S., Penaranda M.E., et al. Investigation of an outbreak of adult diarrhea rotavirus in China. J Infect Dis 160 (1989) 948-953
10. Flores J., Boegeman E., Purcell R.H., Sereno M., Perez I., White L., et al. A dot hybridization assay for detection of rotavirus. Lancet ii (1983) 555-558
11. Gouvea V., Allen J.R., Glass R.I., Fang Z.Y., Bremont M., Cohen J., et al. Detection of group B and C rotaviruses by polymerase chain reaction. J Clin Microbiol 29 (1991) 519-523
12. Herring A.J., Inglis N.F., Ojeh C.K., Snodgrass D.R., and Menzies J.D. Rapid diagnosis of rotavirus infection by direct detection of viral nucleic acid in silver-stained polyacrylamide gels. J Clin Microbiol 16 (1982) 473-477
13. Hung T., Chen G., Wang C., Chou Z., Chao T., Ye W., et al. Rotavirus-like agent in adult non-bacterial diarrhoea in China. Lancet ii (1983) 1078-1079
14. Hung T., Chen G.M., Wang C.G., Yao H.L., Fang Z.Y., Chao T.X., et al. Waterborne outbreak of rotavirus diarrhoea in adults in China caused by a novel rotavirus. Lancet ii (1984) 1139-1142
15. Jiang B., Dennehy P.H., Spangenberger S., Gentsch J.R., and Glass R.I. First detection of group C rotavirus in fecal specimens of children with diarrhea in the United States. J Infect Dis 172 (1995) 45-50
16. Kapikian A.Z., Hoshino Y., and Chanock R.M. Rotaviruses. In: Knipe D.M., Howley P.M., Griffin D.E., Lamb R.A., Martin M.A., Roizman B., and Straus S.E. (Eds). Field's virology. 4th ed. (2001), Lippincott. Williams and Wilkins, Philadelphia 1787-1833
17. Kelkar S.D., and Zade J.K. Group B rotaviruses similar to strain CAL-1, have been circulating in Western India since 1991. Epidemiol Infect 132 (2004) 745-749
18. Kim Y., Chang K.O., Straw B., and Saif L.J. Characterization of group C rotaviruses associated with diarrhea outbreaks in feeder pigs. J Clin Microbiol 37 (1999) 1484-1488
19. Krishnan T., Sen A., Choudhury J.S., Das S., Naik T.N., and Bhattacharya S.K. Emergence of adult diarrhoea rotavirus in Calcutta India. Lancet 353 (1999) 380-381
20. MacKow E.R. Group B and C rotaviruses. In: Blaser M.J., Smith P.D., Ravdin J.I., Greenberg H.B., and Guerrant R.L. (Eds). Infections of the gastrointestinal tract (1995), Raven Press Ltd., NY 983-1008
21. Phan T.G., Nishimura S., Okame M., Nguyen T.A., Khamrin P., Okitsu S., et al. Virus diversity and an outbreak of group C rotavirus among infants and children with diarrhea in Maizuru city Japan during 2002-2003. J Med Virol 74 (2004) 173-179
22. Rosa E Silva M.L., Pires De Carvalho I., and Gouvea V. 1998-1999 rotavirus seasons in Juiz de Fora, Minas Gerais, Brazil: detection of an unusual G3P[4] epidemic strain. J Clin Microbiol 40 (2002) 2837-2842
23. Saif L.J., and Jiang B. Non group A rotaviruses of humans and animals. In: Ramig R.F. (Ed). Rotaviruses (1994), Springer-Verlag, New York 339-371
24. Sanekata T., Kuwamoto Y., Akamatsu S., Sakon N., Oseto M., Taniguchi K., et al. Isolation of group B porcine rotavirus in cell culture. J Clin Microbiol 34 (1996) 759-761
25. Sanekata T., Ahmed M.U., Kader A., Taniguchi K., and Kobayashi N. Human group B rotavirus infections cause severe diarrhea in children and adults in Bangladesh. J Clin Microbiol 41 (2003) 2187-2190
26. Sen A., Kobayashi N., Das S., Krishnan T., Bhattacharya S.K., Urasawa S., et al. Amplification of various genes of human group B rotavirus from stool specimens by RT-PCR. J Clin Virol 17 (2000) 177-181
27. Sen A., Kobayashi N., Bhattacharya S.K., and Naik T.N. Molecular characterization and epidemiology of group B rotaviruses. In: Raghunath D., and Nayak R. (Eds). Diarrhoeal diseases, current status, research trends and field studies (2003), Tata McGraw-Hill Publishing Co. Ltd, New Delhi 137-178
28. Sigolo de San Juan C., Bellinzoni R.C., Mattion N., La Torre J., and Scodeller E.A. Incidence of group A and atypical rotaviruses in Brazilian pig herds. Res Vet Sci 41 (1986) 270-272
29. Varghese V., Das S., Singh Ng.B., Kojima K., Bhattacharya S.K., Krishnan T., et al. Molecular characterization of a human rotavirus reveals porcine characteristics in most of the genes including VP6 and NSP4. Arch Virol 149 (2004) 155-172
30. Yang J.H., Kobayashi N., Wang Y.H., Zhou X., Li Y., Zhou D.J., et al. Phylogenetic analysis of a human group B rotavirus WH-1 detected in China in 2002. J Med Virol 74 (2004) 662-667