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Volumn 3, Issue , 2006, Pages

Nucleotide mismatches between the VP7 gene and the primer are associated with genotyping failure of a specific lineage from G1 rotavirus strains

Author keywords

[No Author keywords available]

Indexed keywords

ACUTE DIARRHEA; ARTICLE; GENE; GENE DELETION; GENE INSERTION; GENE SEQUENCE; GENOTYPE; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POINT MUTATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; VIRUS STRAIN; VP7 GENE;

EID: 33745298729     PISSN: 1743422X     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-3-35     Document Type: Article
Times cited : (19)

References (29)
  • 2
    • 0001581287 scopus 로고    scopus 로고
    • Rotaviruses and their replication
    • Edited by: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B and Straus SE. Philadelphia, Pa, Lippincott/Williams & Wilkins
    • Estes M: Rotaviruses and their replication. In Fields virology 4th edition. Edited by: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B and Straus SE. Philadelphia, Pa, Lippincott/Williams & Wilkins; 2001:1747-1785.
    • (2001) Fields Virology 4th Edition , pp. 1747-1785
    • Estes, M.1
  • 6
    • 0033046447 scopus 로고    scopus 로고
    • Genetic and antigenic variation of capsid protein VP7 of serotype G1 human rotavirus isolates
    • Diwakarla CS, Palombo EA: Genetic and antigenic variation of capsid protein VP7 of serotype G1 human rotavirus isolates. J Gen Virol 1999, 80:341-344.
    • (1999) J Gen Virol , vol.80 , pp. 341-344
    • Diwakarla, C.S.1    Palombo, E.A.2
  • 8
    • 17544396312 scopus 로고    scopus 로고
    • Diversity within the VP4 gene of rotavirus P[8] strains: Implications for reverse transcription-PCR genotyping
    • Iturriza-Gomara M, Green J, Brown DW, Desselberger U, Gray JJ: Diversity within the VP4 gene of rotavirus P[8] strains: implications for reverse transcription-PCR genotyping. J Clin Microbiol 2000, 38:898-901.
    • (2000) J Clin Microbiol , vol.38 , pp. 898-901
    • Iturriza-Gomara, M.1    Green, J.2    Brown, D.W.3    Desselberger, U.4    Gray, J.J.5
  • 9
    • 4644268839 scopus 로고    scopus 로고
    • Sequencing and phylogenetic analysis of human genotype P[6] rotavirus strains detected in Hungary provides evidence for genetic heterogeneity within the P[6] VP4 gene
    • Banyai K, Martella V, Jakab F, Melegh B, Szucs G: Sequencing and phylogenetic analysis of human genotype P[6] rotavirus strains detected in Hungary provides evidence for genetic heterogeneity within the P[6] VP4 gene. J Clin Microbiol 2004, 42:4338-4343.
    • (2004) J Clin Microbiol , vol.42 , pp. 4338-4343
    • Banyai, K.1    Martella, V.2    Jakab, F.3    Melegh, B.4    Szucs, G.5
  • 10
    • 0036263034 scopus 로고    scopus 로고
    • Genetic variation of capsid protein VP7 in genotype g4 human rotavirus strains: Simultaneous emergence and spread of different lineages in Argentina
    • Bok K, Matson DO, Gomez JA: Genetic variation of capsid protein VP7 in genotype g4 human rotavirus strains: simultaneous emergence and spread of different lineages in Argentina. J Clin Microbiol 2002, 40:2016-2022.
    • (2002) J Clin Microbiol , vol.40 , pp. 2016-2022
    • Bok, K.1    Matson, D.O.2    Gomez, J.A.3
  • 11
    • 0032990271 scopus 로고    scopus 로고
    • Identification of two lineages (WA-like and F45-like) within the major rotavirus genotype P[8]
    • Gouvea V, Lima RC, Linhares RE, Clark HF, Nosawa CM, Santos N: Identification of two lineages (WA-like and F45-like) within the major rotavirus genotype P[8]. Virus Res 1999, 59:141-147.
    • (1999) Virus Res , vol.59 , pp. 141-147
    • Gouvea, V.1    Lima, R.C.2    Linhares, R.E.3    Clark, H.F.4    Nosawa, C.M.5    Santos, N.6
  • 12
    • 0347695009 scopus 로고    scopus 로고
    • Antigenic and genetic characterization of serotype G2 human rotavirus strains from South Africa from 1984 to 1998
    • Page NA, Steele AD: Antigenic and genetic characterization of serotype G2 human rotavirus strains from South Africa from 1984 to 1998. J Med Virol 2004, 72:320-327.
    • (2004) J Med Virol , vol.72 , pp. 320-327
    • Page, N.A.1    Steele, A.D.2
  • 13
    • 11244302672 scopus 로고    scopus 로고
    • Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine
    • Santos N, Hoshino Y: Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 2005, 15:29-56.
    • (2005) Rev Med Virol , vol.15 , pp. 29-56
    • Santos, N.1    Hoshino, Y.2
  • 14
    • 0032743584 scopus 로고    scopus 로고
    • Genetic and antigenic diversity of human rotaviruses: Potential impact on the success of candidate vaccines
    • Palombo EA: Genetic and antigenic diversity of human rotaviruses: potential impact on the success of candidate vaccines. FEMS Microbiol Lett 1999, 181:1-8.
    • (1999) FEMS Microbiol Lett , vol.181 , pp. 1-8
    • Palombo, E.A.1
  • 17
    • 5644234201 scopus 로고    scopus 로고
    • Rotavirus genotyping: Keeping up with an evolving population of human rotaviruses
    • Iturriza-Gomara M, Kang G, Gray J: Rotavirus genotyping: keeping up with an evolving population of human rotaviruses. J Clin Virol 2004, 31:259-265.
    • (2004) J Clin Virol , vol.31 , pp. 259-265
    • Iturriza-Gomara, M.1    Kang, G.2    Gray, J.3
  • 21
    • 0030779855 scopus 로고    scopus 로고
    • Nigerian rotavirus serotype G8 could not be typed by PCR due to nucleotide mutation at the 3′ end of the primer binding site
    • Adah MI, Rohwedder A, Olaleyle OD, Werchau H: Nigerian rotavirus serotype G8 could not be typed by PCR due to nucleotide mutation at the 3′ end of the primer binding site. Arch Virol 1997, 142:1881-1887.
    • (1997) Arch Virol , vol.142 , pp. 1881-1887
    • Adah, M.I.1    Rohwedder, A.2    Olaleyle, O.D.3    Werchau, H.4
  • 26
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
    • Kumar S, Tamura K, Nei M: MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 2004, 5:150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 27
    • 23744461888 scopus 로고    scopus 로고
    • Predominance of rotavirus genotype G9 during the 1999, 2000, and 2002 seasons among hospitalized children in the city of Salvador, Bahia, Brazil: Implications for future vaccine strategies
    • Santos N, Volotao EM, Soares CC, Campos GS, Sardi SI, Hoshino Y: Predominance of rotavirus genotype G9 during the 1999, 2000, and 2002 seasons among hospitalized children in the city of Salvador, Bahia, Brazil: implications for future vaccine strategies. J Clin Microbiol 2005, 43:4064-4069.
    • (2005) J Clin Microbiol , vol.43 , pp. 4064-4069
    • Santos, N.1    Volotao, E.M.2    Soares, C.C.3    Campos, G.S.4    Sardi, S.I.5    Hoshino, Y.6
  • 28
    • 0036308528 scopus 로고    scopus 로고
    • Detection and genotyping of human group A rotaviruses by oligonucleotide microarray hybridization
    • Chizhikov V, Wagner M, Ivshina A, Hoshino Y, Kapikian AZ, Chumakov K: Detection and genotyping of human group A rotaviruses by oligonucleotide microarray hybridization. J Clin Microbiol 2002, 40:2398-2407.
    • (2002) J Clin Microbiol , vol.40 , pp. 2398-2407
    • Chizhikov, V.1    Wagner, M.2    Ivshina, A.3    Hoshino, Y.4    Kapikian, A.Z.5    Chumakov, K.6
  • 29
    • 0242677606 scopus 로고    scopus 로고
    • Microarrays for genotyping human group a rotavirus by multiplex capture and type-specific primer extension
    • Lovmar L, Fock C, Espinoza F, Bucardo F, Syvanen AC, Bondeson K: Microarrays for genotyping human group a rotavirus by multiplex capture and type-specific primer extension. J Clin Microbiol 2003, 41:5153-5158.
    • (2003) J Clin Microbiol , vol.41 , pp. 5153-5158
    • Lovmar, L.1    Fock, C.2    Espinoza, F.3    Bucardo, F.4    Syvanen, A.C.5    Bondeson, K.6


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