Emergence and characterization of serotype G9 rotavirus strains from africa

Journal of Infectious Diseases

Volumn 202, Issue SUPPL. 1, 2010, Pages

  Page, Nicola ^a,b,k   Esona, Mathew ^b,d   Armah, George ^b,e   Nyangao, James ^f   Mwenda, Jason ^g   Sebunya, Theresa ^h   Basu, Gorav ^h   Pyndiah, Naidu ⁱ   Potgieter, Natasha ^c   Geyer, Annelise ^b   Steele, A Duncan ^b,j  

^a National Institute for Communicable Diseases   (Australia)

^b UNIVERSITY OF LIMPOPO   (South Africa)

^c UNIVERSITY OF VENDA   (South Africa)

^d CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^e University of Ghana   (Ghana)

^f KENYA MEDICAL RESEARCH INSTITUTE   (Kenya)

^g INSTITUTE OF PRIMATE RESEARCH   (Kenya)

^h UNIVERSITY OF BOTSWANA   (Botswana)

ⁱ Central Health Laboratory   (Mauritius)

^j WORLD HEALTH ORGANIZATION   (Switzerland)

^k NONE   (South Africa)

more..

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; MONOCLONAL ANTIBODY;

AFRICA; AMINO ACID SEQUENCE; ARTICLE; CHILD; GENETIC REASSORTMENT; GENOTYPE; HUMAN; INDIA; JAPAN; MAJOR CLINICAL STUDY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYLOGEOGRAPHY; PRESCHOOL CHILD; PRIORITY JOURNAL; ROTAVIRUS; SEROTYPE; SOUTH AFRICA; VIRUS STRAIN;

EID: 77955668308     PISSN: 00221899     EISSN: None     Source Type: Journal    
DOI: 10.1086/653551     Document Type: Article

References (63)

1. Cunliffe NA, Kilgore PE, Bresee JS, et al. Epidemiology of rotavirus diarrhoea in Africa: a review of studies to anticipate rotavirus immunization. Bull WHO 1998; 76:525-537.
2. Bern C, Glass RI. Impact of diarrheal diseases worldwide. In: Kapikian AZ, ed. Viral infections of the gastrointestinal tract. 2nd ed. New York: Marcel Dekker, 1994:1-26.
3. Dennehy PH. Rotavirus vaccines: an overview. Clin Microbiol Rev 2008; 21:198-208.
4. Desselberger U, Iturriza-Gómara M, Gray JJ. Rotavirus epidemiology and surveillance. Novartis Found Symp 2001; 238:125-147; discussion, 147-152.
5. Gentsch JR, Laird AR, Bielfelt B, et al. Serotype diversity and reassortment between human and animal rotavirus strains: implications for rotavirus vaccine programs. J Infect Dis 2005; 192 (Suppl 1): S146-S159.
6. Rao CD, Gowda K, Reddy BS. Sequence analysis of VP4 and VP7 genes of nontypeable strains identifies a new pair of outer capsid proteins representing novel P and G genotypes in bovine rotaviruses. Virology 2000; 276:104-113.
7. Khamrin P, Maneekarn N, Peerakome S, et al. Novel porcine rotavirus of genotype P[27] shares new phylogenetic lineage with G2 porcine rotavirus strain. Virology 2007; 361:243-252.
8. Green KY, Midthun K, Gorziglia M, et al. Comparison of the amino acid sequences of the major neutralization protein of four human rotavirus serotypes. Virology 1987; 161:153-159.
9. Coulson BS, Kirkwood CD, Masendycz PJ, Bishop RF, Gerna G. Amino acids involved in distinguishing between monotypes of rotavirus G serotypes 2 and 4. J Gen Virol 1996; 77:239-245.
10. Dyall-Smith ML, Lazdins I, Tregear GW, Holmes IH. Location of major antigenic sites involved in rotavirus serotype-specific neutralization. Proc Nat Acad Sci USA 1986; 83:3465-3468.
11. Georges-Courbot MC, Beraud AM, Beards GM, et al. Subgroups, serotypes, and electropherotypes of rotaviruses isolated from children in Bangui, Central African Republic. J Clin Microbiol 1988; 26:668-671.
12. Rowland M, Goh S, Williams K, et al. Epidemiological aspects of rotavirus infection in young Gambian children. Ann Trop Paediatr 1985; 5:23-28.
13. Urasawa T, Urasawa S, Chiba Y, Taniguchi K, Kobayashi N, Bosu K. Antigenic characterization of rotaviruses isolated in Kenya from 1982 to 1983. J Clin Microbiol 1987; 25:1891-1896.
14. Avery RM, Shelton AP, Beards GM, Omotade OO, Oyejide OC, Olaleye DO. Viral agents associated with infantile gastroenteritis in Nigeria: Relative prevalence of adenovirus serotypes 40 and 41, astrovirus, and rotavirus serotypes 1 to 4. J Diarrhoeal Dis Res 1992; 10:105-108.
15. Steele AD, van Niekerk MC, Mphahlele MJ. Geographic distribution of human rotavirus VP4 genotypes and VP7 serotypes in five South African regions. J Clin Microbiol 1995; 33:1516-1519.
16. Cunliffe NA, Gondwe JS, Broadhead RL, et al. Rotavirus G and P types in children with acute diarrhoea in Blantyre, Malawi, from 1997 to 1998: predominance of novel P[6]G8 strains. J Med Virol 1999; 57: 308-312.
17. Nakata S, Gatheru Z, Ukae S, et al. Epidemiological study of the G serotype distribution of group A rotaviruses in Kenya from 1991 to 1994. J Med Virol 1999; 58:296-303.
18. Asmah RH, Green J, Armah GE, et al. Rotavirus G and P genotypes in rural Ghana. J Clin Microbiol 2001; 39:1981-1984.
19. Fischer TK, Steinsland H, Mølbak K, et al. Genotype profiles of rotavirus strains from children in a suburban community in Guinea- Bissau, Western Africa. J Clin Microbiol 2000; 38:264-267.
20. Fischer T, Page N, Griffen D, et al. Characterization of nontypeable rotavirus strains from Guinea-Bissau: identification of uncommon G8 and G9 types and a high frequency of mixed infections. Virology 2003; 311:125-133.
21. Steele AD, Ivanoff B; African Rotavirus Network. Rotavirus strains circulating in Africa during 1996-1999: emergence of G9 strains and P[6] strains. Vaccine 2003; 21:361-367.
22. Clark HF, Hoshino Y, Bell LM, et al. Rotavirus isolate WI61 representing a presumptive new human serotype. J Clin Microbiol 1987; 25:1757-1762.
23. Nakagomi T, Akatani K, Ikegami N, Katsushima N, Nakagomi O. Occurrence of changes in human rotavirus serotypes with concurrent changes in genomic RNA electropherotypes. J Clin Microbiol 1988; 26:2586-2592.
24. Nakagomi T, Ohshima A, Akatani K, Ikegami N, Katsushima N, Nakagomi O. Isolation and molecular characterization of a serotype 9 human rotavirus strain. Microbiol Immunol 1990; 34:77-82.
25. Urasawa S, Hasegawa A, Urasawa T, et al. Antigenic and genetic analyses of human rotaviruses in Chiang Mai, Thailand: evidence for a close relationship between human and animal rotaviruses. J Infect Dis 1992; 166:227-234.
26. Das BK, Gentsch JR, Cicirello HG, et al. Characterization of rotavirus strains from newborns in New Delhi, India. J Clin Microbiol 1994; 32: 1820-1822.
27. Ramachandran M, Das BK, Vij A, et al. Unusual diversity of human G and P genotypes in India. J Clin Microbiol 1996; 34:436-439.
28. Laird AR, Gentsch JR, Nakagomi T, Nakagomi O, Glass RI. Characterization of serotype G9 rotavirus strains isolated in the United States and India from 1993 to 2001. J Clin Microbiol 2003; 41:3100-3111.
29. Araujo IT, Ferreira MSR, Fialho AM, et al. Rotavirus genotypes, P[4]G9, P[6]G9, and P[8]G9 in hospitalised children with acute gastroenteritis in Rio da Janeiro, Brazil. J Clin Microbiol 2001; 39:1999-2001.
30. Bok K, Palacios G, Sijvarger K, Matson D, Gomez J. Emergence of G9P[6] human rotaviruses in Argentina: phylogenetic relationships among G9 strains. J Clin Microbiol 2001; 39:4020-4025.
31. Coluchi N, Munford V, Manzur J, et al. Detection, subgroup specificity, and genotype diversity of rotavirus strains in children with acute diarrhea in Paraguay. J Clin Microbiol 2002; 40:1709-1714.
32. Cunliffe NA, Dove W, Bunn JEG, et al. Expanding global distribution of rotavirus serotype G9: Detection in Libya, Kenya and Cuba. Emerg Infect Dis 2001; 7:890-892.
33. Fang Z, Yang H, Qi J, et al. Diversity of rotavirus strains among children with acute diarrhea in China: 1998-2000 surveillance study. J Clin Microbiol 2002; 40:1875-1878.
34. Santos N, Lima RCC, Nozawa CM, Linhares RE, Gouvea V. Detection of porcine rotavirus type G9 and of a mixture of types G1 and G5 associated with Wa-like VP4 specificity: evidence for natural humanporcine reassortment. J Clin Microbiol 1999; 37:2734-2736.
35. Fitzgerald TA, Munoz M, Wood AR, Snodgrass DR. Serological and genomic characterization of group A rotavirus from lamb. Arch Virol 1995; 140:1541-1548.
36. Ruiz-Palacios GM, Pérez-Schael M, Velásquez FR, et al.; Human Rotavirus Vaccine Study Group. Safety and efficacy of an attenuated vaccine against severe rotavirus gastroenteritis. N Engl J Med 2006; 354: 11-22.
37. Vesikari T, Matson DO, Dennehy P, et al. Safety and efficacy of a pentavalent human-bovine (WC3) reassortant rotavirus vaccine. N Engl J Med 2006; 354:23-33.
38. Steele AD, Alexander JJ. Molecular epidemiology of rotavirus in black infants in South Africa. J Clin Microbiol 1987; 25:2384-2387.
39. Steele AD, Alexander JJ. The relative frequency of subgroup I and II rotaviruses in black infants in South Africa. J Med Virol 1988; 24: 321-327.
40. Steele AD, Peenze I, de Beer MC, et al. Anticipating rotavirus vaccines: epidemiology and surveillance of rotavirus in South Africa. Vaccine 2003; 21:354-360.
41. Armah GE, Steele AD, Binka FN, et al. Changing patterns of rotavirus genotypes in Ghana: emergence of human rotavirus G9 as a major cause of diarrhea in children. J Clin Microbiol 2003; 41:2317-2322.
42. Esona M, Armah GE, Steele AD. Molecular epidemiology of rotavirus infection in western Cameroon. J Trop Pediatr 2003; 49:160-163.
43. Nyangao J, Pager C, Peenze I, et al. Molecular epidemiology of human rotavirus strains present in Kenya. In: Program and abstracts of the Virology Congress of Southern Africa (Cape Town). 28-30 October 1998. Poster 62.
44. Gouvea V, Glass RI, Woods P, et al. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 1990; 28:276-282.
45. Gentsch JR, Glass RI,Woods P, et al. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 1992; 30: 1365-1373.
46. Beards GM, Campbell AD, Cottrell R, et al. Enzyme-linked immunosorbent assay based on polyclonal and monoclonal antibodies for rotavirus detection. J Clin Microbiol 1984; 19:248-254.
47. Greenberg HB, McAuliffe V, Valdesuso J, et al. Serological analysis of the subgroup protein of rotavirus, using monoclonal antibodies. Infect Immun 1983; 39:91-99.
48. Herring AJ, Inglis NF, Ojeh CK, Snodgrass DR, Menzies JD. Rapid diagnosis of rotavirus infection by direct detection of viral nucleic acid in silver-stained polyacrylamide gels. J Clin Microbiol 1982; 16: 473-477.
49. Page RMD. TreeView: An application to display phylogenetic trees on personal computers. Comput App Biosc 1996; 12:357-358.
50. Taniguchi K, Urasawa T, Morita Y, Greenberg HB, Urasawa S. Direct serotyping of human rotavirus in stools by enzyme-linked immunosorbent assay using serotype 1-, 2-, 3-, and 4-specific monoclonal antibodies to VP7. J Infect Dis 1987; 155:1159-1166.
51. Shaw RD, Stoner-Ma DL, Estes MK, Greenberg HB. Specific enzymelinked immunoassay for rotavirus serotypes 1 and 3. J Clin Microbiol 1985; 22:286-291.
52. Coulson BS, Gentsch JR, Das BK, Glass RI. Comparison of enzyme immunoassay and reverse transcriptase PCR for identification of serotype G9 rotaviruses. J Clin Microbiol 1999; 37:3187-3193.
53. Driessen M, de Villiers FPR, Peenze I, de Beer M, Steele AD. The clinical significance of the endemic neonatal rotavirus infection in the neonatal unit, Ga-Rankuwa Hospital. In: Program and abstracts of the International Congress of the World Federation of Associations of Paediatric Surgeons (Cape Town). 2-6 February 1998.
54. Green KY, Hoshino Y, Ikegami N. Sequence analysis of the gene encoding the serotype-specific glycoprotein (VP7) of two new human rotavirus serotypes. Virology 1989; 168:429-433.
55. Das BK, Gentsch JR, Hoshino Y, et al. Characterization of the G serotype and genogroup of New Delhi newborn rotavirus strains 116E. Virology 1993; 197:99-107.
56. Unicomb LE, Podder G, Gentsch JR, et al. Evidence of high-frequency genomic reassortment of group A rotavirus strains in Bangladesh: Emergence of type G9 in 1995. J Clin Microbiol 1999; 37:1885-1891.
57. Ramachandran M, Kirkwood CD, Unicomb L, et al. Molecular characterization of serotype G9 rotavirus strains from a global collection. Virology 2000; 278:436-444.
58. Oka T, Nakagomi T, Nakagomi O. Apparent re-emergence of serotype G9 in 1995 among rotaviruses recovered from Japanese children hospitalized with acute gastroenteritis. Microbiol Immunol 2000; 44: 957-961.
59. Zhou Y, Supawadee J, Khamwan C, et al. Characterization of human rotavirus serotype G9 isolated in Japan and Thailand from 1995 to 1997. J Med Virol 2001; 65:619-628.
60. Iturriza-Gómara M, Cubitt D, Steele AD, et al. Characterization of rotavirus G9 strains isolated in the UK between 1995 and 1998. J Med Virol 2000; 61:510-517.
61. Phan TG, Okitsu S, Maneekarn N, Ushijima H. Genetic heterogeneity, evolution and recombination in emerging G9 rotaviruses. Infect Genet Evol 2007; 7:656-663.
62. Hoshino Y, Jones RW, Ross J, et al. Rotavirus serotype G9 strains belonging to VP7 gene phylogenetic sequence lineage 1 may be more suitable for serotype G9 vaccine candidates than those belonging to lineage 2 or 3. J Virol 2004; 78:7795-7802.
63. Vesikari T, Karvonen A, Puustinen L, et al. Efficacy of RIX 4414 live attenuated human rotavirus vaccine in Finnish infants. Pediatr Infect Dis 2004; 23:937-943.