메뉴 건너뛰기




Volumn 8, Issue 1, 2008, Pages 94-99

Genetic diversity of the VP4 and VP7 genes affects the genotyping of rotaviruses: Analysis of Paraguayan strains

Author keywords

Genetic diversity; Genotyping; Rotavirus

Indexed keywords

NUCLEOTIDE; PROTEIN VP4; PROTEIN VP7; VIRUS PROTEIN;

EID: 36749075566     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2007.08.003     Document Type: Article
Times cited : (17)

References (40)
  • 1
    • 0030779855 scopus 로고    scopus 로고
    • Nigerian rotavirus serotype G8 could not be typed by PCR due to nucleotide mutation at the 3′ end of the primer binding site
    • Adah M.I., Rohwedder A., Olaleyle O.D., and Werchau H. Nigerian rotavirus serotype G8 could not be typed by PCR due to nucleotide mutation at the 3′ end of the primer binding site. Arch. Virol. 142 (1997) 1881-1887
    • (1997) Arch. Virol. , vol.142 , pp. 1881-1887
    • Adah, M.I.1    Rohwedder, A.2    Olaleyle, O.D.3    Werchau, H.4
  • 5
    • 4644268839 scopus 로고    scopus 로고
    • Sequencing and phylogenetic analysis of human genotype P[6] rotavirus strains detected in Hungary provides evidence for genetic heterogeneity within the P[6] VP4 gene
    • Banyai K., Martella V., Jakab F., Melegh B., and Szucs G. Sequencing and phylogenetic analysis of human genotype P[6] rotavirus strains detected in Hungary provides evidence for genetic heterogeneity within the P[6] VP4 gene. J. Clin. Microbiol. 42 (2004) 4338-4343
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 4338-4343
    • Banyai, K.1    Martella, V.2    Jakab, F.3    Melegh, B.4    Szucs, G.5
  • 7
    • 0036246241 scopus 로고    scopus 로고
    • Detection, subgroup specificity, and genotype diversity of rotavirus strains in children with acute diarrhea in Paraguay
    • Coluchi N., Munford V., Manzur J., Vazquez C., Escobar M., Weber E., Marmol P., and Racz M.L. Detection, subgroup specificity, and genotype diversity of rotavirus strains in children with acute diarrhea in Paraguay. J. Clin. Microbiol. 40 (2002) 1709-1714
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 1709-1714
    • Coluchi, N.1    Munford, V.2    Manzur, J.3    Vazquez, C.4    Escobar, M.5    Weber, E.6    Marmol, P.7    Racz, M.L.8
  • 12
    • 1542374059 scopus 로고    scopus 로고
    • Rotavirus typing methods and algorithms
    • Fischer T.K., and Gentsch J.R. Rotavirus typing methods and algorithms. Rev. Med. Virol. 14 (2004) 71-82
    • (2004) Rev. Med. Virol. , vol.14 , pp. 71-82
    • Fischer, T.K.1    Gentsch, J.R.2
  • 15
    • 0034788177 scopus 로고    scopus 로고
    • Amino acid substitution within the VP7 protein of G2 rotavirus strains associated with failure to serotype
    • Gomara M.I., Cubitt D., Desselberger U., and Gray J. Amino acid substitution within the VP7 protein of G2 rotavirus strains associated with failure to serotype. J. Clin. Microbiol. 39 (2001) 3796-3798
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 3796-3798
    • Gomara, M.I.1    Cubitt, D.2    Desselberger, U.3    Gray, J.4
  • 17
    • 0028268868 scopus 로고
    • Identification of bovine and porcine rotavirus G types by PCR
    • Gouvea V., Santos N., and Timenetsky Mdo C. Identification of bovine and porcine rotavirus G types by PCR. J. Clin. Microbiol. 32 (1994) 1338-1340
    • (1994) J. Clin. Microbiol. , vol.32 , pp. 1338-1340
    • Gouvea, V.1    Santos, N.2    Timenetsky Mdo, C.3
  • 18
    • 0028349166 scopus 로고
    • VP4 typing of bovine and porcine group A rotaviruses by PCR
    • Gouvea V., Santos N., and Timenetsky Mdo C. VP4 typing of bovine and porcine group A rotaviruses by PCR. J. Clin. Microbiol. 32 (1994) 1333-1337
    • (1994) J. Clin. Microbiol. , vol.32 , pp. 1333-1337
    • Gouvea, V.1    Santos, N.2    Timenetsky Mdo, C.3
  • 19
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41 (1999) 95-98
    • (1999) Nucl. Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.1
  • 20
    • 17544396312 scopus 로고    scopus 로고
    • Diversity within the VP4 gene of rotavirus P[8] strains: implications for reverse transcription-PCR genotyping
    • Iturriza-Gomara M., Green J., Brown D.W., Desselberger U., and Gray J.J. Diversity within the VP4 gene of rotavirus P[8] strains: implications for reverse transcription-PCR genotyping. J. Clin. Microbiol. 38 (2000) 898-901
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 898-901
    • Iturriza-Gomara, M.1    Green, J.2    Brown, D.W.3    Desselberger, U.4    Gray, J.J.5
  • 21
    • 5644234201 scopus 로고    scopus 로고
    • Rotavirus genotyping: keeping up with an evolving population of human rotaviruses
    • Iturriza-Gomara M., Kang G., and Gray J. Rotavirus genotyping: keeping up with an evolving population of human rotaviruses. J. Clin. Virol. 31 (2004) 259-265
    • (2004) J. Clin. Virol. , vol.31 , pp. 259-265
    • Iturriza-Gomara, M.1    Kang, G.2    Gray, J.3
  • 22
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5 (2004) 150-163
    • (2004) Brief Bioinform. , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 23
    • 0025305576 scopus 로고
    • Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies
    • Kwok S., Kellogg D.E., McKinney N., Spasic D., Goda L., Levenson C., and Sninsky J.J. Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies. Nucleic Acids Res. 18 (1990) 999-1005
    • (1990) Nucleic Acids Res. , vol.18 , pp. 999-1005
    • Kwok, S.1    Kellogg, D.E.2    McKinney, N.3    Spasic, D.4    Goda, L.5    Levenson, C.6    Sninsky, J.J.7
  • 28
    • 0347695009 scopus 로고    scopus 로고
    • Antigenic and genetic characterization of serotype G2 human rotavirus strains from South Africa from 1984 to 1998
    • Page N.A., and Steele A.D. Antigenic and genetic characterization of serotype G2 human rotavirus strains from South Africa from 1984 to 1998. J. Med. Virol. 72 (2004) 320-327
    • (2004) J. Med. Virol. , vol.72 , pp. 320-327
    • Page, N.A.1    Steele, A.D.2
  • 30
    • 27744543467 scopus 로고    scopus 로고
    • Molecular characterization and genetic variation of the VP7 gene of human rotaviruses isolated in Paraguay
    • Parra G.I., Bok K., Martinez V., Russomando G., and Gomez J. Molecular characterization and genetic variation of the VP7 gene of human rotaviruses isolated in Paraguay. J. Med. Virol. 77 (2005) 579-586
    • (2005) J. Med. Virol. , vol.77 , pp. 579-586
    • Parra, G.I.1    Bok, K.2    Martinez, V.3    Russomando, G.4    Gomez, J.5
  • 31
    • 33745298729 scopus 로고    scopus 로고
    • Nucleotide mismatches between the VP7 gene and the primer are associated with genotyping failure of a specific lineage from G1 rotavirus strains
    • Parra G.I., and Espinola E.E. Nucleotide mismatches between the VP7 gene and the primer are associated with genotyping failure of a specific lineage from G1 rotavirus strains. Virol. J. 3 (2006) 35
    • (2006) Virol. J. , vol.3 , pp. 35
    • Parra, G.I.1    Espinola, E.E.2
  • 32
    • 34548674905 scopus 로고    scopus 로고
    • Parra, G.I., Espinola, E.E., Amarilla, A.A., Stupka, J., Martinez, M., Zunini, M., Galeano, M.E., Gomes, K., Russomando, G., Arbiza, J., in press. Diversity of group A rotavirus strains circulating in Paraguay from 2002 to 2005: detection of an atypical G1 in South America. J. Clin. Virol. doi:10.1016/j.jcv.2007.07.006.
  • 33
    • 33846578827 scopus 로고    scopus 로고
    • Genetic characterization of group A rotavirus strains circulating among children with acute gastroenteritis in Japan in 2004-2005
    • Phan T.G., Khamrin P., Trinh D.Q., Dey S.K., Yagyu F., Okitsu S., Nishio O., and Ushijima H. Genetic characterization of group A rotavirus strains circulating among children with acute gastroenteritis in Japan in 2004-2005. Infect. Genet. Evol. 7 (2007) 247-253
    • (2007) Infect. Genet. Evol. , vol.7 , pp. 247-253
    • Phan, T.G.1    Khamrin, P.2    Trinh, D.Q.3    Dey, S.K.4    Yagyu, F.5    Okitsu, S.6    Nishio, O.7    Ushijima, H.8
  • 35
    • 11244302672 scopus 로고    scopus 로고
    • Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine
    • Santos N., and Hoshino Y. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev. Med. Virol. 15 (2005) 29-56
    • (2005) Rev. Med. Virol. , vol.15 , pp. 29-56
    • Santos, N.1    Hoshino, Y.2
  • 36
    • 0031821128 scopus 로고    scopus 로고
    • Detection of rotavirus types G8 and G10 among Brazilian children with diarrhea
    • Santos N., Lima R.C., Pereira C.F., and Gouvea V. Detection of rotavirus types G8 and G10 among Brazilian children with diarrhea. J. Clin. Microbiol. 36 (1998) 2727-2729
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 2727-2729
    • Santos, N.1    Lima, R.C.2    Pereira, C.F.3    Gouvea, V.4
  • 38
    • 0024376686 scopus 로고
    • Minimal homology requirements for PCR primers
    • Sommer R., and Tautz D. Minimal homology requirements for PCR primers. Nucleic Acids Res. 17 (1989) 6749
    • (1989) Nucleic Acids Res. , vol.17 , pp. 6749
    • Sommer, R.1    Tautz, D.2
  • 39
    • 34248202280 scopus 로고    scopus 로고
    • Detection of human rotavirus G9P[8] strains circulating in Argentina: phylogenetic analysis of VP7 and NSP4 genes
    • Stupka J.A., Parra G.I., Gomez J., and Arbiza J. Detection of human rotavirus G9P[8] strains circulating in Argentina: phylogenetic analysis of VP7 and NSP4 genes. J. Med. Virol. 79 (2007) 838-842
    • (2007) J. Med. Virol. , vol.79 , pp. 838-842
    • Stupka, J.A.1    Parra, G.I.2    Gomez, J.3    Arbiza, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.