Human G9P[8] rotavirus strains circulating in Cameroon, 1999-2000: Genetic relationships with other G9 strains and detection of a new G9 subtype

Infection, Genetics and Evolution

Volumn 18, Issue , 2013, Pages 315-324

  Esona, M D ^a,g   Mijatovic Rustempasic, S ^a   Foytich, K ^a   Roy, S ^a   Banyai, K ^b   Armah, G E ^c   Steele, A D ^d   Volotao E M ^e   Gomez, M M ^e   Silva, M F M ^e   Gautam, R ^a   Quaye, O ^a   Tam, K I ^a   Forbi, J C ^f   Seheri, M ^g   Page, N ^g,h   Nyangao, J ⁱ   Ndze, V N ^j   Aminu, M ^k   Bowen, M D ^a   Gentsch, J R ^a   more..

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^b INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

^c University of Ghana   (Ghana)

^d PATH   (United States)

^e INSTITUTO OSWALDO CRUZ   (Brazil)

^f Innovative Biotech   (Nigeria)

^g SEFAKO MAKGATHO HEALTH SCIENCES UNIVERSITY   (South Africa)

^h NATIONAL INSTITUTE FOR COMMUNICABLE DISEASES   (South Africa)

ⁱ KENYA MEDICAL RESEARCH INSTITUTE   (Kenya)

^j UNIVERSITY OF YAOUNDÉ I   (Cameroon)

^k AHMADU BELLO UNIVERSITY   (Nigeria)

more..

Author keywords

Genomic phylogenetic analysis; Genotype P 8 G9; Non structural proteins; Rotavirus A; Structural proteins

Indexed keywords

PROTEIN VP7;

AMINO ACID SEQUENCE; ARTICLE; CAMEROON; FECES ANALYSIS; GENE SEQUENCE; GENETIC DISTANCE; GENETIC VARIABILITY; HUMAN ROTAVIRUS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; VIRUS DETECTION; VIRUS GENE; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS STRAIN; VP7 GENE;

GENOMIC PHYLOGENETIC ANALYSIS; GENOTYPE P[8]G9; NON-STRUCTURAL PROTEINS; ROTAVIRUS A; STRUCTURAL PROTEINS;

AMINO ACID SEQUENCE; ANTIGENS, VIRAL; CAMEROON; CAPSID PROTEINS; CHILD, PRESCHOOL; GENOME, VIRAL; HUMANS; INFANT; MOLECULAR SEQUENCE DATA; PHYLOGENY; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ALIGNMENT;

EID: 84880314945     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2013.06.005     Document Type: Article

References (58)

1. Aoki S.T., Settembre E.C., Trask S.D., Greenberg H.B., Harrison S.C., Dormitzer P.R. Structure of rotavirus outer-layer protein VP7 bound with a neutralizing Fab. Science 2009, 324:1444-1447.
2. Ball J.M., Tian P., Zeng C.Q., Morris A.P., Estes M.K. Age-dependent diarrhea induced by a rotaviral nonstructural glycoprotein. Science 1996, 272:101-104.
3. Ball J.M., Mitchell D.M., Gibbons T.F., Parr R.D. Rotavirus NSP4: a multifunctional viral enterotoxin. Viral Immunol. 2005, 18:27-40.
4. Banyai K., Gentsch J.R., Martella V., Bogdan A., Havasi V., Kisfali P., Szabo A., Mihaly I., Molnar P., Melegh B., Szucs G. Trends in the epidemiology of human G1P[8] rotaviruses: a hungarian study. J. Infect. Dis. 2009, 200(Suppl. 1):S222-S227.
5. Banyai K., Papp H., Dandar E., Molnar P., Mihaly I., Van Ranst M., Martella V., Matthijnssens J. Whole genome sequencing and phylogenetic analysis of a zoonotic human G8P[14] rotavirus strain. Infect. Genet. Evol. 2010, 10:1140-1144.
6. Banyai K., Mijatovic-Rustempasic S., Hull J.J., Esona M.D., Freeman M.M., Frace A.M., Bowen M.D., Gentsch J.R. Sequencing and phylogenetic analysis of the coding region of six common rotavirus strains: evidence for intragenogroup reassortment among co-circulating G1P[8] and G2P[4] strains from the United States. J. Med. Virol. 2011, 83:532-539.
7. Banyai K., Laszlo B., Duque J., Steele A.D., Nelson E.A., Gentsch J.R., Parashar U.D. Systematic review of regional and temporal trends in global rotavirus strain diversity in the pre rotavirus vaccine era: insights for understanding the impact of rotavirus vaccination programs. Vaccine 2012, 30(Suppl. 1):A122-A130.
8. Boom R., Sol C.J., Salimans M.M., Jansen C.L., Wertheim-van Dillen P.M., van der Noordaa J. Rapid and simple method for purification of nucleic acids. J. Clin. Microbiol. 1990, 28:495-503.
9. Borgan M.A., Mori Y., Ito N., Sugiyama M., Minamoto N. Antigenic analysis of nonstructural protein (NSP) 4 of group A avian rotavirus strain PO-13. Microbiol. Immunol. 2003, 47:661-668.
10. Claeson M., Bos E.R., Mawji T., Pathmanathan I. Reducing child mortality in India in the new millennium. Bull. World Health Organ. 2000, 78:1192-1199.
11. Das B.K., Gentsch J.R., Cicirello H.G., Woods P.A., Gupta A., Ramachandran M., Kumar R., Bhan M.K., Glass R.I. Characterization of rotavirus strains from newborns in New Delhi, India. J. Clin. Microbiol. 1994, 32:1820-1822.
12. Esona M.D., Armah G.E., Steele A.D. Rotavirus VP4 and VP7 genotypes circulating in Cameroon: identification of unusual types. J. Infect. Dis. 2010, 202(Suppl.):S205-S211.
13. Esona M.D., Mijatovic-Rustempasic S., Conrardy C., Tong S., Kuzmin I.V., Agwanda B., Breiman R.F., Banyai K., Niezgoda M., Rupprecht C.E., Gentsch J.R., Bowen M.D. Reassortant group A rotavirus from straw-colored fruit bat (Eidolon helvum). Emerg. Infect. Dis. 2010, 16:1844-1852.
14. Esona M.D., Banyai K., Foytich K., Freeman M., Mijatovic-Rustempasic S., Hull J., Kerin T., Steele A.D., Armah G.E., Geyer A., Page N., Agbaya V.A., Forbi J.C., Aminu M., Gautam R., Seheri L.M., Nyangao J., Glass R., Bowen M.D., Gentsch J.R. Genomic characterization of human rotavirus G10 strains from the African rotavirus network: relationship to animal rotaviruses. Infect. Genet. Evol. 2011, 11:237-241.
15. Estes M.K., Kapikian A. Rotaviruses. Fields Virology 2007, 1917-1974. Kluwer/Lippincott, Williams and Wilkins, Philadelphia, PA. 5th ed. D.M. Knipe, P.M. Howley, D.E. Griffin, R.A. Lamb, M.A. Martin, B. Roizman, S.E. Straus (Eds.).
16. Gentsch J.R., Glass R.I., Woods P., Gouvea V., Gorziglia M., Flores J., Das B.K., Bhan M.K. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J. Clin. Microbiol. 1992, 30:1365-1373.
17. Gentsch J.R., Laird A.R., Bielfelt B., Griffin D.D., Banyai K., Ramachandran M., Jain V., Cunliffe N.A., Nakagomi O., Kirkwood C.D., Fischer T.K., Parashar U.D., Bresee J.S., Jiang B., Glass R.I. Serotype diversity and reassortment between human and animal rotavirus strains: implications for rotavirus vaccine programs. J. Infect. Dis. 2005, 192:S146-S159.
18. Glass R.I., Parashar U.D., Bresee J.S., Turcios R., Fischer T.K., Widdowson M.A., Jiang B., Gentsch J.R. Rotavirus vaccines: current prospects and future challenges. Lancet 2006, 368:323-332.
19. Green K.Y., Sears J.F., Taniguchi K., Midthun K., Hoshino Y., Gorziglia M., Nishikawa K., Urasawa S., Kapikian A.Z., Chanock R.M., et al. Prediction of human rotavirus serotype by nucleotide sequence analysis of the VP7 protein gene. J. Virol. 1988, 62:1819-1823.
20. Green K.Y., Hoshino Y., Ikegami N. Sequence analysis of the gene encoding the serotype-specific glycoprotein (VP7) of two new human rotavirus serotypes. Virology 1989, 168:429-433.
21. Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59:307-321.
22. Iturriza Gomara M., Wong C., Blome S., Desselberger U., Gray J. Molecular characterization of VP6 genes of human rotavirus isolates: correlation of genogroups with subgroups and evidence of independent segregation. J. Virol. 2002, 76:6596-6601.
23. Iturriza-Gomara M., Isherwood B., Desselberger U., Gray J. Reassortment in vivo: driving force for diversity of human rotavirus strains isolated in the United Kingdom between 1995 and 1999. J. Virol. 2001, 75:3696-3705.
24. Kerin T.K., Kane E.M., Glass R.I., Gentsch J.R. Characterization of VP6 genes from rotavirus strains collected in the United States from 1996 to 2002. Virus Genes 2007, 35:489-495.
25. Kirkwood C., Masendycz P.J., Coulson B.S. Characteristics and location of cross-reactive and serotype-specific neutralization sites on VP7 of human G type 9 rotaviruses. Virology 1993, 196:79-88.
26. Kirkwood C., Bogdanovic-Sakran N., Palombo E., Masendycz P., Bugg H., Barnes G., Bishop R. Genetic and antigenic characterization of rotavirus serotype G9 strains isolated in Australia between 1997 and 2001. J. Clin. Microbiol. 2003, 41:3649-3654.
27. Laird A.R., Gentsch J.R., Nakagomi T., Nakagomi O., Glass R.I. Characterization of serotype G9 rotavirus strains isolated in the United States and India from 1993 to 2001. J. Clin. Microbiol. 2003, 41:3100-3111.
28. Leite J.P., Carvalho-Costa F.A., Linhares A.C. Group A rotavirus genotypes and the ongoing Brazilian experience: a review. Mem. Inst. Oswaldo Cruz 2008, 103:745-753.
29. Martinez-Laso J., Roman A., Head J., Cervera I., Rodriguez M., Rodriguez-Avial I., Picazo J.J. Phylogeny of G9 rotavirus genotype: a possible explanation of its origin and evolution. J. Clin. Virol. 2009, 44:52-57.
30. Matthijnssens J., Rahman M., Martella V., Xuelei Y., De Vos S., De Leener K., Ciarlet M., Buonavoglia C., Van Ranst M. Full genomic analysis of human rotavirus strain B4106 and lapine rotavirus strain 30/96 provides evidence for interspecies transmission. J. Virol. 2006, 80:3801-3810.
31. Matthijnssens J., Ciarlet M., Heiman E., Arijs I., Delbeke T., McDonald S.M., Palombo E.A., Iturriza-Gomara M., Maes P., Patton J.T., Rahman M., Van Ranst M. Full genome-based classification of rotaviruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J. Virol. 2008, 82:3204-3219.
32. Matthijnssens J., Ciarlet M., Rahman M., Attoui H., Banyai K., Estes M.K., Gentsch J.R., Iturriza-Gomara M., Kirkwood C.D., Martella V., Mertens P.P., Nakagomi O., Patton J.T., Ruggeri F.M., Saif L.J., Santos N., Steyer A., Taniguchi K., Desselberger U., Van Ranst M. Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Arch. Virol. 2008, 153:1621-1629.
33. Matthijnssens J., Rahman M., Van Ranst M. Two out of the 11 genes of an unusual human G6P[6] rotavirus isolate are of bovine origin. J. Gen. Virol. 2008, 89:2630-2635.
34. Matthijnssens J., Bilcke J., Ciarlet M., Martella V., Banyai K., Rahman M., Zeller M., Beutels P., Van Damme P., Van Ranst M. Rotavirus disease and vaccination: impact on genotype diversity. Future Microbiol. 2009, 4:1303-1316.
35. Matthijnssens J., Heylen E., Zeller M., Rahman M., Lemey P., Van Ranst M. Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread. Mol. Biol. Evol. 2010, 27:2431-2436.
36. Matthijnssens J., Ciarlet M., McDonald S.M., Attoui H., Banyai K., Brister J.R., Buesa J., Esona M.D., Estes M.K., Gentsch J.R., Iturriza-Gomara M., Johne R., Kirkwood C.D., Martella V., Mertens P.P., Nakagomi O., Parreno V., Rahman M., Ruggeri F.M., Saif L.J., Santos N., Steyer A., Taniguchi K., Patton J.T., Desselberger U., Van Ranst M. Uniformity of rotavirus strain nomenclature proposed by the rotavirus classification working group (RCWG). Arch. Virol. 2011, 156:1397-1413.
37. McDonald S.M., Aguayo D., Gonzalez-Nilo F.D., Patton J.T. Shared and group-specific features of the rotavirus RNA polymerase reveal potential determinants of gene reassortment restriction. J. Virol. 2009, 83:6135-6148.
38. McDonald S.M., Davis K., McAllen J.K., Spiro D.J., Patton J.T. Intra-genotypic diversity of archival G4P[8] human rotaviruses from Washington, DC. Infect. Genet. Evol. 2011, 11:1586-1594.
39. Mijatovic-Rustempasic S., Banyai K., Esona M.D., Foytich K., Bowen M.D., Gentsch J.R. Genome sequence based molecular epidemiology of unusual US Rotavirus A G9 strains isolated from Omaha, USA between 1997 and 2000. Infect. Genet. Evol. 2011, 11:522-527.
40. Page N., Esona M., Armah G., Nyangao J., Mwenda J., Sebunya T., Basu G., Pyndiah N., Potgieter N., Geyer A., Steele A.D. Emergence and characterization of serotype G9 rotavirus strains from Africa. J. Infect. Dis. 2010, 202(Suppl.):S55-63.
41. Parashar U.D., Burton A., Lanata C., Boschi-Pinto C., Shibuya K., Steele D., Birmingham M., Glass R.I. Global mortality associated with rotavirus disease among children in 2004. J. Infect. Dis. 2009, 200(Suppl. 1):S9-S15.
42. Parra G.I. Seasonal shifts of group A rotavirus strains as a possible mechanism of persistence in the human population. J. Med. Virol. 2009, 81:568-571.
43. Parra G.I., Bok K., Martinez V., Russomando G., Gomez J. Molecular characterization and genetic variation of the VP7 gene of human rotaviruses isolated in Paraguay. J. Med. Virol. 2005, 77:579-586.
44. Phan T.G., Okitsu S., Maneekarn N., Ushijima H. Genetic heterogeneity, evolution and recombination in emerging G9 rotaviruses. Infect. Genet. Evol. 2007, 7:656-663.
45. Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
46. Rahman M., Sultana R., Ahmed G., Nahar S., Hassan Z.M., Saiada F., Podder G., Faruque A.S., Siddique A.K., Sack D.A., Matthijnssens J., Van Ranst M., Azim T. Prevalence of G2P[4] and G12P[6] rotavirus, Bangladesh. Emerg. Infect. Dis. 2007, 13:18-24.
47. Ramig R.F. Genetics of the rotaviruses. Annu Rev Microbiol 1997, 51:225-255.
48. Santos N., Hoshino Y. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev. Med. Virol. 2005, 15:29-56.
49. Schrodinger, LLC., 2010. The PyMOL Molecular Graphics System, Version 1.3r1.
50. Steele A.D., Ivanoff B. Rotavirus strains circulating in Africa during 1996-1999: emergence of G9 strains and P[6] strains. Vaccine 2003, 21:361-367.
51. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
52. Tate, J., Burton, A., Boschi-Pinto, C., Steele, A., Duque, J., Parashar, U., Global, a.t.W.-c., Network*, R.S., 2011. 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis. Lancet 11, DOI:10.1016/S1473-3099(1011)70253-70255.
53. Tian P., Estes M.K., Hu Y., Ball J.M., Zeng C.Q., Schilling W.P. The rotavirus nonstructural glycoprotein NSP4 mobilizes Ca2+ from the endoplasmic reticulum. J. Virol. 1995, 69:5763-5772.
54. Tian P., Ball J.M., Zeng C.Q., Estes M.K. The rotavirus nonstructural glycoprotein NSP4 possesses membrane destabilization activity. J. Virol. 1996, 70:6973-6981.
55. Vesikari T., Karvonen A., Prymula R., Schuster V., Tejedor J.C., Cohen R., Meurice F., Han H.H., Damaso S., Bouckenooghe A. Efficacy of human rotavirus vaccine against rotavirus gastroenteritis during the first 2years of life in European infants: randomised, double-blind controlled study. Lancet 2007, 370:1757-1763.
56. Wu F.T., Banyai K., Huang J.C., Wu H.S., Chang F.Y., Yang J.Y., Hsiung C.A., Huang Y.C., Lin J.S., Hwang K.P., Jiang B., Gentsch J.R. Diverse origin of P[19] rotaviruses in children with acute diarrhea in Taiwan: detection of novel lineages of the G3, G5, and G9 VP7 genes. J. Med. Virol. 2011, 83:1279-1287.
57. Zhang J. Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes. J. Mol. Evol. 2000, 50:56-68.
58. Zhang M., Zeng C.Q., Dong Y., Ball J.M., Saif L.J., Morris A.P., Estes M.K. Mutations in rotavirus nonstructural glycoprotein NSP4 are associated with altered virus virulence. J. Virol. 1998, 72:3666-3672.