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Volumn 29, Issue 13, 2013, Pages

CAMPways: Constrained alignment framework for the comparative analysis of a pair of metabolic pathways

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; METABOLIC ENGINEERING; METABOLISM; ARTICLE;

EID: 84879975686     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt235     Document Type: Conference Paper
Times cited : (18)

References (31)
  • 1
    • 84863662483 scopus 로고    scopus 로고
    • Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using init
    • Agren, R. et al. (2012) Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using init. PLoS Comput. Biol., 8, e1002518.
    • (2012) PLoS Comput. Biol. , vol.8
    • Agren, R.1
  • 2
    • 84875609301 scopus 로고    scopus 로고
    • Spinal: Scalable protein interaction network alignment
    • Aladaǧ, A.E. and Erten, C. (2013) Spinal: Scalable protein interaction network alignment. Bioinformatics, 29, 917-924.
    • (2013) Bioinformatics , vol.29 , pp. 917-924
    • Aladaǧ, A.E.1    Erten, C.2
  • 3
    • 79952392096 scopus 로고    scopus 로고
    • Submap: Aligning metabolic pathways with subnetwork mappings
    • Ay, F. et al. (2011) Submap: Aligning metabolic pathways with subnetwork mappings. J. Comput. Biol., 18, 219-235.
    • (2011) J. Comput. Biol. , vol.18 , pp. 219-235
    • Ay, F.1
  • 4
    • 84874572467 scopus 로고    scopus 로고
    • Metabolic network alignment in large scale by network compression
    • Ay, F. et al. (2012) Metabolic network alignment in large scale by network compression. BMC Bioinformatics, 13 (Suppl. 3), S2.
    • (2012) BMC Bioinformatics , vol.13 , Issue.SUPPL.3
    • Ay, F.1
  • 5
    • 79960613860 scopus 로고    scopus 로고
    • Belief propagation for weighted b-matchings on arbitrary graphs and its relation to linear programs with integer solutions
    • Bayati, M. et al. (2011) Belief propagation for weighted b-matchings on arbitrary graphs and its relation to linear programs with integer solutions. SIAM J. Discrete Math., 25, 989-1011.
    • (2011) SIAM J Discrete Math. , vol.25 , pp. 989-1011
    • Bayati, M.1
  • 6
    • 59949092688 scopus 로고    scopus 로고
    • Murine and human cathepsin B exhibit similar properties: Possible implications for drug discovery
    • Caglic, D. et al. (2009) Murine and human cathepsin B exhibit similar properties: Possible implications for drug discovery. Biol. Chem., 390, 175-179.
    • (2009) Biol. Chem. , vol.390 , pp. 175-179
    • Caglic, D.1
  • 7
    • 38549117301 scopus 로고    scopus 로고
    • The MetaCyc database of metabolic pathways and enzymes and the biocyc collection of pathway/genome databases
    • Caspi, R. et al. (2008) The MetaCyc database of metabolic pathways and enzymes and the biocyc collection of pathway/genome databases. Nucleic Acids Res., 36, D623-31.
    • (2008) Nucleic Acids Res. , vol.36
    • Caspi, R.1
  • 8
    • 77955495879 scopus 로고    scopus 로고
    • Local optimization for global alignment of protein interaction networks
    • Chindelevitch, L. et al. (2010) Local optimization for global alignment of protein interaction networks. In: Pacific Symposium on Biocomputing. Hawaii, USA, pp. 123-132.
    • (2010) Pacific Symposium on Biocomputing. Hawaii, USA , pp. 123-132
    • Chindelevitch, L.1
  • 9
    • 33846672559 scopus 로고    scopus 로고
    • Phylogenetic reconstruction from non-genomic data
    • Clemente, J.C. et al. (2007) Phylogenetic reconstruction from non-genomic data. Bioinformatics, 23, e110-e115.
    • (2007) Bioinformatics , vol.23
    • Clemente, J.C.1
  • 10
    • 0001214263 scopus 로고
    • Maximum matching and a polyhedron with 0 1-vertices
    • Edmonds, J. (1965) Maximum matching and a polyhedron with 0 1-vertices. J. Res. Natl Bur. Stand. B, 69, 125-130.
    • (1965) J. Res. Natl Bur. Stand. B , vol.69 , pp. 125-130
    • Edmonds, J.1
  • 11
    • 33748257786 scopus 로고    scopus 로고
    • Graemlin: General and robust alignment of multiple large interaction networks
    • Flannick, J. et al. (2006) Graemlin: General and robust alignment of multiple large interaction networks. Genome Res., 16, 1169-1181.
    • (2006) Genome Res. , vol.16 , pp. 1169-1181
    • Flannick, J.1
  • 14
    • 34547830837 scopus 로고    scopus 로고
    • A network-based method for target selection in metabolic networks
    • Guimerà, R. et al. (2007) A network-based method for target selection in metabolic networks. Bioinformatics, 23, 1616-1622.
    • (2007) Bioinformatics , vol.23 , pp. 1616-1622
    • Guimerà, R.1
  • 15
    • 4944219668 scopus 로고    scopus 로고
    • Deriving phylogenetic trees from the similarity analysis of metabolic pathways
    • Heymans, M. and Singh, A. (2003) Deriving phylogenetic trees from the similarity analysis of metabolic pathways. Bioinformatics, 19, 138-146.
    • (2003) Bioinformatics , vol.19 , pp. 138-146
    • Heymans, M.1    Singh, A.2
  • 16
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • Kanehisa, M. et al. (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res., 40, 109-114.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 109-114
    • Kanehisa, M.1
  • 17
    • 3442886313 scopus 로고    scopus 로고
    • Pathblast: A tool for alignment of protein interaction networks
    • Kelley, B.P. et al. (2004) Pathblast: A tool for alignment of protein interaction networks. Nucleic Acids Res., 32, 83-88.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 83-88
    • Kelley, B.P.1
  • 18
    • 33645985807 scopus 로고    scopus 로고
    • Pairwise alignment of protein interaction networks
    • Koyutürk, M. et al. (2006) Pairwise alignment of protein interaction networks. J. Comput. Biol., 13, 182-199.
    • (2006) J. Comput. Biol. , vol.13 , pp. 182-199
    • Koyutürk, M.1
  • 19
    • 79955751671 scopus 로고    scopus 로고
    • Integrative network alignment reveals large regions of global network similarity in yeast and human
    • Kuchaiev, O. and Pržulj, N. (2011) Integrative network alignment reveals large regions of global network similarity in yeast and human. Bioinformatics, 27, 1390-1396.
    • (2011) Bioinformatics , vol.27 , pp. 1390-1396
    • Kuchaiev, O.1    Pržulj, N.2
  • 20
    • 66349108229 scopus 로고    scopus 로고
    • Isorankn: Spectral methods for global alignment of multiple protein networks
    • Liao, C.S. et al. (2009) Isorankn: Spectral methods for global alignment of multiple protein networks. Bioinformatics, 25, i253-i258.
    • (2009) Bioinformatics , vol.25
    • Liao, C.S.1
  • 23
    • 78650490181 scopus 로고    scopus 로고
    • Comparative analysis of metabolic networks provides insight into the evolution of plant pathogenic and non-pathogenic lifestyles in Pseudomonas
    • Mithani, A. et al. (2011) Comparative analysis of metabolic networks provides insight into the evolution of plant pathogenic and non-pathogenic lifestyles in Pseudomonas. Mol. Biol. Evol., 28, 483-499.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 483-499
    • Mithani, A.1
  • 24
    • 24044488288 scopus 로고    scopus 로고
    • Alignment of metabolic pathways
    • Pinter, R.Y. et al. (2005) Alignment of metabolic pathways. Bioinformatics, 21, 3401-3408.
    • (2005) Bioinformatics , vol.21 , pp. 3401-3408
    • Pinter, R.Y.1
  • 25
    • 84867932159 scopus 로고    scopus 로고
    • A note on greedy algorithms for the maximum weighted independent set problem
    • Sakai, S. et al. (2003) A note on greedy algorithms for the maximum weighted independent set problem. Discrete Appl. Math., 126, 313-322.
    • (2003) Discrete Appl. Math. , vol.126 , pp. 313-322
    • Sakai, S.1
  • 26
    • 13844314048 scopus 로고    scopus 로고
    • Conserved patterns of protein interaction in multiple species
    • Sharan, R. et al. (2005) Conserved patterns of protein interaction in multiple species. Proc. Natl Acad. Sci. USA, 102, 1974-1979.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 1974-1979
    • Sharan, R.1
  • 27
    • 40549129437 scopus 로고    scopus 로고
    • Global alignment of multiple protein interaction networks
    • Singh, R. et al. (2008) Global alignment of multiple protein interaction networks. In: Pacific Symposium on Biocomputing. Hawaii, USA, pp. 303-314.
    • (2008) Pacific Symposium on Biocomputing. Hawaii USA , pp. 303-314
    • Singh, R.1
  • 29
    • 34047236483 scopus 로고    scopus 로고
    • Path matching and graph matching in biological networks
    • Yang, Q. and Sze, S.H. (2007) Path matching and graph matching in biological networks. J. Comput. Biol., 14, 56-67.
    • (2007) J. Comput. Biol. , vol.14 , pp. 56-67
    • Yang, Q.1    Sze, S.H.2
  • 30
    • 66349109783 scopus 로고    scopus 로고
    • Global alignment of protein-protein interaction networks by graph matching methods
    • Zaslavskiy, M. et al. (2009) Global alignment of protein-protein interaction networks by graph matching methods. Bioinformatics, 25, 259-267.
    • (2009) Bioinformatics , vol.25 , pp. 259-267
    • Zaslavskiy, M.1
  • 31
    • 34547852210 scopus 로고    scopus 로고
    • Alignment of molecular networks by integer quadratic programming
    • Zhenping, L. et al. (2007) Alignment of molecular networks by integer quadratic programming. Bioinformatics, 23, 1631-1639.
    • (2007) Bioinformatics , vol.23 , pp. 1631-1639
    • Zhenping, L.1


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