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Volumn 27, Issue 10, 2011, Pages 1390-1396

Integrative network alignment reveals large regions of global network similarity in yeast and human

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); HERPESVIRIDAE; SACCHAROMYCES CEREVISIAE;

EID: 79955751671     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr127     Document Type: Article
Times cited : (231)

References (36)
  • 1
    • 17444387503 scopus 로고    scopus 로고
    • Comparative analysis of the saccharomyces cerevisiae and caenorhabditis elegans protein interaction networks
    • Agrafioti, I. et al. (2005) Comparative analysis of the saccharomyces cerevisiae and caenorhabditis elegans protein interaction networks. BMC Evol. Biol., 5, 23.
    • (2005) BMC Evol. Biol. , vol.5 , pp. 23
    • Agrafioti, I.1
  • 2
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul, S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
    • (1990) J. Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 3
    • 77955495879 scopus 로고    scopus 로고
    • Local optimization for global alignment of protein interaction networks
    • Chindelevitch, L. et al. (2010) Local optimization for global alignment of protein interaction networks. In Pacific Symposium on Biocomputing, pp. 123-132.
    • (2010) Pacific Symposium on Biocomputing , pp. 123-132
    • Chindelevitch, L.1
  • 4
    • 34147121646 scopus 로고    scopus 로고
    • Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
    • Collins, S.R. et al. (2007) Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae. Mol. Cell Proteomics, 6, 439-450.
    • (2007) Mol. Cell Proteomics , vol.6 , pp. 439-450
    • Collins, S.R.1
  • 6
    • 0000122573 scopus 로고
    • Phylip-phylogeny inference package (version 3 2)
    • Felsenstein, J. (1989) Phylip-phylogeny inference package (version 3.2). Cladistics, 5, 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 7
    • 33748257786 scopus 로고    scopus 로고
    • Graemlin: general and robust alignment of multiple large interaction networks
    • Flannick, J. et al. (2006) Graemlin: general and robust alignment of multiple large interaction networks. Genome Res., 16, 1169-1181.
    • (2006) Genome Res. , vol.16 , pp. 1169-1181
    • Flannick, J.1
  • 9
    • 70349677166 scopus 로고    scopus 로고
    • Evolutionarily conserved herpesviral protein interaction networks
    • Fossum, E. et al. (2009) Evolutionarily conserved herpesviral protein interaction networks. PLoS Pathog., 5, e1000570.
    • (2009) PLoS Pathog. , vol.5
    • Fossum, E.1
  • 10
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • Ho, Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature, 415, 180-183.
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1
  • 11
    • 3442886313 scopus 로고    scopus 로고
    • PathBLAST: a tool for alignment of protein interaction networks
    • Kelley, B. et al. (2004) PathBLAST: a tool for alignment of protein interaction networks. Nucleic Acids Res., 32, 83-88.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 83-88
    • Kelley, B.1
  • 12
    • 60849107715 scopus 로고    scopus 로고
    • Anew graph-based method for pairwise global network alignment
    • Klau, G. (2009)Anew graph-based method for pairwise global network alignment. BMC Bioinformatics, 10, S59.
    • (2009) BMC Bioinformatics , vol.10
    • Klau, G.1
  • 13
    • 33645985807 scopus 로고    scopus 로고
    • Pairwise alignment of protein interaction networks
    • Koyuturk, M. et al. (2006) Pairwise alignment of protein interaction networks. J. Comput. Biol., 13, 182-199.
    • (2006) J. Comput. Biol. , vol.13 , pp. 182-199
    • Koyuturk, M.1
  • 14
    • 33645453254 scopus 로고    scopus 로고
    • Global landscape of protein complexes in the yeast saccharomyces cerevisiae
    • Krogan, N.J. et al. (2006) Global landscape of protein complexes in the yeast saccharomyces cerevisiae. Nature, 440, 637-643.
    • (2006) Nature , vol.440 , pp. 637-643
    • Krogan, N.J.1
  • 15
    • 77956576710 scopus 로고    scopus 로고
    • Topological network alignment uncovers biological function and phylogeny
    • Kuchaiev, O. et al. (2010) Topological network alignment uncovers biological function and phylogeny. J. R. Soc. Interface, 7, 1341-1354.
    • (2010) J. R. Soc. Interface , vol.7 , pp. 1341-1354
    • Kuchaiev, O.1
  • 16
    • 34547579706 scopus 로고    scopus 로고
    • Web services at the european bioinformatics institute
    • Labarga, A. et al. (2007) Web services at the european bioinformatics institute. Nucleic Acids Res., 35, W6-W11.
    • (2007) Nucleic Acids Res. , vol.35
    • Labarga, A.1
  • 17
    • 66349108229 scopus 로고    scopus 로고
    • IsorankN: spectral methods for global alignment of multiple protein networks
    • Liao, C.-S. et al. (2009) IsorankN: spectral methods for global alignment of multiple protein networks. Bioinformatics, 25, 253-258.
    • (2009) Bioinformatics , vol.25 , pp. 253-258
    • Liao, C.-S.1
  • 18
    • 11144244968 scopus 로고    scopus 로고
    • Integrating reptilian herpesviruses into the family herpesviridae
    • McGeoch, D.J. and Gatherer, D. (2005) Integrating reptilian herpesviruses into the family herpesviridae. J. Virol., 79, 725-731.
    • (2005) J. Virol. , vol.79 , pp. 725-731
    • McGeoch, D.J.1    Gatherer, D.2
  • 19
    • 33645054794 scopus 로고    scopus 로고
    • Topics in herpesvirus genomics and evolution
    • McGeoch, D. et al. (2006) Topics in herpesvirus genomics and evolution. Virus Res., 117, 90-104.
    • (2006) Virus Res. , vol.117 , pp. 90-104
    • McGeoch, D.1
  • 20
    • 49649109285 scopus 로고    scopus 로고
    • Uncovering biological network function via graphlet degree signatures
    • Milenkovic, T. and Pržulj, N. (2008) Uncovering biological network function via graphlet degree signatures. Cancer Informat., 6, 257-273.
    • (2008) Cancer Informat. , vol.6 , pp. 257-273
    • Milenkovic, T.1    Pržulj, N.2
  • 21
    • 77955499935 scopus 로고    scopus 로고
    • Optimal network alignment with graphlet degree vectors
    • Milenkovic, T. et al. (2010) Optimal network alignment with graphlet degree vectors. Cancer Informat., 9, 121-137.
    • (2010) Cancer Informat. , vol.9 , pp. 121-137
    • Milenkovic, T.1
  • 22
    • 1542287343 scopus 로고    scopus 로고
    • Superfamilies of evolved and designed networks
    • Milo, R. et al. (2004) Superfamilies of evolved and designed networks. Science, 303, 1538-1542.
    • (2004) Science , vol.303 , pp. 1538-1542
    • Milo, R.1
  • 23
    • 38549161592 scopus 로고    scopus 로고
    • A proteome-wide protein interaction map for Campylobacter jejuni
    • Parrish, J.R. et al. (2007) A proteome-wide protein interaction map for Campylobacter jejuni. Genome Biol., 8, R130.
    • (2007) Genome Biol. , vol.8
    • Parrish, J.R.1
  • 24
    • 73549083239 scopus 로고    scopus 로고
    • The modular organization of protein interactions in Escherichia coli
    • Peregrin-Alvarez, J.M. et al. (2009) The modular organization of protein interactions in Escherichia coli. PLoS Comput. Biol., 5, e1000523.
    • (2009) PLoS Comput. Biol. , vol.5
    • Peregrin-Alvarez, J.M.1
  • 25
    • 47349128648 scopus 로고    scopus 로고
    • An integrated approach to inferring gene-disease associations in humans
    • Radivojac, P. et al. (2008) An integrated approach to inferring gene-disease associations in humans. Proteins, 72, 1030-1037.
    • (2008) Proteins , vol.72 , pp. 1030-1037
    • Radivojac, P.1
  • 26
    • 39749105401 scopus 로고    scopus 로고
    • A large-scale protein protein interaction analysis in Synechocystis sp
    • Sato, S. et al. (2007) A large-scale protein protein interaction analysis in Synechocystis sp. PCC6803. DNA Res., 14, 207-216.
    • (2007) PCC6803. DNA Res. , vol.14 , pp. 207-216
    • Sato, S.1
  • 27
    • 13844314048 scopus 로고    scopus 로고
    • Conserved patterns of protein interaction in multiple species
    • Sharan, R. et al. (2005) Conserved patterns of protein interaction in multiple species. Proc. Natl Acad. Sci. USA, 102, 1974-1979.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 1974-1979
    • Sharan, R.1
  • 28
    • 73549094892 scopus 로고    scopus 로고
    • A large scale analysis of protein-protein interactions in the nitrogen-fixing bacterium Mesorhizobium loti
    • Shimoda, Y. et al. (2008) A large scale analysis of protein-protein interactions in the nitrogen-fixing bacterium Mesorhizobium loti. DNA Res., 15, 13-23.
    • (2008) DNA Res. , vol.15 , pp. 13-23
    • Shimoda, Y.1
  • 29
    • 58149218155 scopus 로고    scopus 로고
    • Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network
    • Simonis, N. et al. (2009) Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Nat. Methods, 6, 47-54.
    • (2009) Nat. Methods , vol.6 , pp. 47-54
    • Simonis, N.1
  • 30
    • 34547416529 scopus 로고    scopus 로고
    • Pairwise global alignment of protein interaction networks by matching neighborhood topology
    • Springer, Berlin
    • Singh, R. et al. (2007) Pairwise global alignment of protein interaction networks by matching neighborhood topology. In Research in Computational Molecular Biology, Springer, Berlin, pp. 16-31.
    • (2007) Research in Computational Molecular Biology , pp. 16-31
    • Singh, R.1
  • 31
    • 40549129437 scopus 로고    scopus 로고
    • Global alignment of multiple protein interaction networks
    • Singh, R. et al. (2008) Global alignment of multiple protein interaction networks. In Proceedings of Pacific Symposium on Biocomputing, pp. 303-314.
    • (2008) Proceedings of Pacific Symposium on Biocomputing , pp. 303-314
    • Singh, R.1
  • 32
    • 25144498379 scopus 로고    scopus 로고
    • A human protein-protein interaction network: a resource for annotating the proteome
    • Stelzl, U. et al. (2005) A human protein-protein interaction network: a resource for annotating the proteome. Cell, 122, 957-968.
    • (2005) Cell , vol.122 , pp. 957-968
    • Stelzl, U.1
  • 33
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium (2000) Gene ontology: tool for the unification of biology. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
  • 34
    • 61949276439 scopus 로고    scopus 로고
    • Pairwise alignment of interaction networks by fast identification of maximal conserved patterns
    • Tian, W. and Samatova, N. (2009) Pairwise alignment of interaction networks by fast identification of maximal conserved patterns. In Pacific Symposium on Biocomputing, pp. 99-110.
    • (2009) Pacific Symposium on Biocomputing , pp. 99-110
    • Tian, W.1    Samatova, N.2
  • 35
    • 0003736078 scopus 로고    scopus 로고
    • 2nd edn. Prentice Hall, Upper Saddle River, NJ, USA
    • West, D.B. (2001) Introduction to Graph Theory, 2nd edn. Prentice Hall, Upper Saddle River, NJ, USA.
    • (2001) Introduction to Graph Theory
    • West, D.B.1
  • 36
    • 66349109783 scopus 로고    scopus 로고
    • Global alignment of protein-protein interaction networks by graph matching methods
    • Zaslavskiy, M. et al. (2009) Global alignment of protein-protein interaction networks by graph matching methods. Bioinformatics, 25, i259-i267.
    • (2009) Bioinformatics , vol.25
    • Zaslavskiy, M.1


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