메뉴 건너뛰기




Volumn 23, Issue 13, 2007, Pages 1631-1639

Alignment of molecular networks by integer quadratic programming

Author keywords

[No Author keywords available]

Indexed keywords

ACETYLORNITHINE ACETYLTRANSFERASE; ACETYLORNITHINE DEACETYLASE; ACYLTRANSFERASE; DROSOPHILA PROTEIN; ESCHERICHIA COLI PROTEIN; HOMOSERINE; HOMOSERINE ACETYLTRANSFERASE; HOMOSERINE SUCCINYLTRANSFERASE; METHIONINE; ORNITHINE CARBAMOYLTRANSFERASE; SACCHAROMYCES CEREVISIAE PROTEIN; UNCLASSIFIED DRUG;

EID: 34547852210     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm156     Document Type: Conference Paper
Times cited : (90)

References (30)
  • 1
    • 84956630545 scopus 로고    scopus 로고
    • An introduction to systems biology: Design principles of biological circuits
    • Chapman &Hall/CRC, Taylor and Francis Group
    • Alon,U. (2006) An introduction to systems biology: Design principles of biological circuits. Boca Raton, FLA, Chapman &Hall/CRC, Taylor and Francis Group.
    • (2006) Boca Raton, FLA
    • Alon, U.1
  • 2
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Bader,G.D. and Hogue,C.W. (2003) An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics, 4, 2.
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2
  • 3
    • 0347473809 scopus 로고    scopus 로고
    • Gaining confidence in high-throughput protein interaction networks
    • Bader,J.S., et al. (2004) Gaining confidence in high-throughput protein interaction networks. Nat. Biotechnol., 22, 78-85.
    • (2004) Nat. Biotechnol , vol.22 , pp. 78-85
    • Bader, J.S.1
  • 4
    • 33644656793 scopus 로고    scopus 로고
    • Systematic identification of functional orthologs based on protein network comparison
    • Bandyopadhyay,S., et al. (2006) Systematic identification of functional orthologs based on protein network comparison. Genome Res. 16, 428-435.
    • (2006) Genome Res , vol.16 , pp. 428-435
    • Bandyopadhyay, S.1
  • 5
    • 6944240088 scopus 로고    scopus 로고
    • Local graph algorithm and motif search in biological networks
    • Berg,J. and Läsig,M. (2004) Local graph algorithm and motif search in biological networks. Proc. Natl Acad. Sci. USA, 101, 14689-14694.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 14689-14694
    • Berg, J.1    Läsig, M.2
  • 6
    • 33746616867 scopus 로고    scopus 로고
    • Cross-species analysis of biological networks by Bayesian alignment
    • Berg,J. and Läsig,M. (2006) Cross-species analysis of biological networks by Bayesian alignment. PNAS, 103, 10967-10972.
    • (2006) PNAS , vol.103 , pp. 10967-10972
    • Berg, J.1    Läsig, M.2
  • 7
    • 37649029024 scopus 로고    scopus 로고
    • Dynamics of gene regulatory networks with cell division cycle
    • Chen,L., et al. (2004) Dynamics of gene regulatory networks with cell division cycle. Phys. Rev. E, 70, 011909.
    • (2004) Phys. Rev. E , vol.70 , pp. 011909
    • Chen, L.1
  • 8
    • 20744444887 scopus 로고    scopus 로고
    • Noise-induced cooperative behavior in a multi-cell system
    • Chen,L., et al. (2005) Noise-induced cooperative behavior in a multi-cell system. Bioinformatics, 21, 2722-2729.
    • (2005) Bioinformatics , vol.21 , pp. 2722-2729
    • Chen, L.1
  • 9
    • 33644835242 scopus 로고    scopus 로고
    • Inferring protein interactions from experimental data by association probabilistic method
    • Chen,L., et al. (2006) Inferring protein interactions from experimental data by association probabilistic method. Proteins, 62, 833-837.
    • (2006) Proteins , vol.62 , pp. 833-837
    • Chen, L.1
  • 10
    • 9144256665 scopus 로고    scopus 로고
    • Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
    • Christie,K.R. et al. (2004) Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res., 32, D311-D314.
    • (2004) Nucleic Acids Res , vol.32
    • Christie, K.R.1
  • 11
    • 0037482108 scopus 로고    scopus 로고
    • Assessment of the reliability of protein-protein interactions and protein function prediction
    • Deng,M., et al. (2003) Assessment of the reliability of protein-protein interactions and protein function prediction. Pac. Symp. Biocomput., 8, 140-151.
    • (2003) Pac. Symp. Biocomput , vol.8 , pp. 140-151
    • Deng, M.1
  • 13
    • 0033518234 scopus 로고    scopus 로고
    • From molecular to modular cell biology
    • Hartwell,L.H., et al. (1999) From molecular to modular cell biology. Nature, 402, C47-C52.
    • (1999) Nature , vol.402
    • Hartwell, L.H.1
  • 14
    • 0141593601 scopus 로고    scopus 로고
    • Conserved pathways within bacteria and yeast as revealed by global protein network alignment
    • Kelley,B.P. et al. (2003) Conserved pathways within bacteria and yeast as revealed by global protein network alignment. Proc. Natl Acad. Sci. USA., 100, 11394-11399.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 11394-11399
    • Kelley, B.P.1
  • 15
    • 3442886313 scopus 로고    scopus 로고
    • PathBLAST: A tool for alignment of protein interaction networks
    • Kelley,P.B. et al. (2004) PathBLAST: A tool for alignment of protein interaction networks. Nucleic Acids Res., 32, 83-88.
    • (2004) Nucleic Acids Res , vol.32 , pp. 83-88
    • Kelley, P.B.1
  • 16
    • 26444593028 scopus 로고    scopus 로고
    • Pairwise local alignment of protein interaction network guided by models of evolution. RECOM 2005
    • Koyutürk,M., et al. (2005) Pairwise local alignment of protein interaction network guided by models of evolution. RECOM 2005, LNBI 3500, 48-65.
    • (2005) LNBI , vol.3500 , pp. 48-65
    • Koyutürk, M.1
  • 17
    • 6944256505 scopus 로고    scopus 로고
    • The E.coli EcoCyc Database: No longer just a metabolic pathway database
    • Karp,P.D. et al. (2004) The E.coli EcoCyc Database: No longer just a metabolic pathway database. ASM News, 70, 25-30.
    • (2004) ASM News , vol.70 , pp. 25-30
    • Karp, P.D.1
  • 18
    • 9444239213 scopus 로고    scopus 로고
    • A probabilistic functional network of yeast genes
    • Lee,I., et al. (2004) A probabilistic functional network of yeast genes. Science, 306, 1555-1558.
    • (2004) Science , vol.306 , pp. 1555-1558
    • Lee, I.1
  • 19
    • 0037012880 scopus 로고    scopus 로고
    • Specificity and stability in topology of protein networks
    • Maslov,S. and Sneppen,K. (2002) Specificity and stability in topology of protein networks. Science, 296, 910-913.
    • (2002) Science , vol.296 , pp. 910-913
    • Maslov, S.1    Sneppen, K.2
  • 20
    • 0034667776 scopus 로고    scopus 로고
    • A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters
    • Ogata,H., et al. (2000) A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters. Nucleic Acids Res., 28, 4021-4028.
    • (2000) Nucleic Acids Res , vol.28 , pp. 4021-4028
    • Ogata, H.1
  • 21
    • 0033657259 scopus 로고    scopus 로고
    • Sensitive sequence comparison as protein function predictor
    • Pawlowski,K., et al. (2000) Sensitive sequence comparison as protein function predictor. Pac. Symp. Biocomput., 5, 42-53.
    • (2000) Pac. Symp. Biocomput , vol.5 , pp. 42-53
    • Pawlowski, K.1
  • 22
    • 24044488288 scopus 로고    scopus 로고
    • Alignment of metabolic pathways
    • Pinter,R.Y., et al. (2005) Alignment of metabolic pathways, Bioinformatics, 21, 3401-3408.
    • (2005) Bioinformatics , vol.21 , pp. 3401-3408
    • Pinter, R.Y.1
  • 23
    • 0035861990 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and in-paralogs from pairs species comparisons
    • Remm, M., et al. (2001) Automatic clustering of orthologs and in-paralogs from pairs species comparisons, J. Mol. Biol., 314 1041-1052.
    • (2001) J. Mol. Biol , vol.314 , pp. 1041-1052
    • Remm, M.1
  • 24
    • 0037417817 scopus 로고    scopus 로고
    • Modular organization of cellular networks
    • Rives,A.W. and Galitski,T. (2003) Modular organization of cellular networks. Proc. Natl Acad. Sci. USA, 100, 1128-1133.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 1128-1133
    • Rives, A.W.1    Galitski, T.2
  • 25
    • 33645732240 scopus 로고    scopus 로고
    • Modeling cellular machinery through biological network comparison
    • Sharan,R. and Ideker, T. (2006) Modeling cellular machinery through biological network comparison. Nat. Biotechnol., 24, 427-433.
    • (2006) Nat. Biotechnol , vol.24 , pp. 427-433
    • Sharan, R.1    Ideker, T.2
  • 27
    • 84872222974 scopus 로고    scopus 로고
    • Functional alignment of regulatory networks: A study of temerate phages
    • Trusina,A., et al. (2005) Functional alignment of regulatory networks: A study of temerate phages. PLoS Comput. Biol., 1, e74.
    • (2005) PLoS Comput. Biol , vol.1
    • Trusina, A.1
  • 28
    • 18444389980 scopus 로고    scopus 로고
    • Synchronizing genetic oscillators by signalling molecules
    • Wang,R. and Chen,L. (2005) Synchronizing genetic oscillators by signalling molecules. J. Biol. Rhythms, 20, 257-269.
    • (2005) J. Biol. Rhythms , vol.20 , pp. 257-269
    • Wang, R.1    Chen, L.2
  • 29
    • 33750016109 scopus 로고    scopus 로고
    • Inferring gene regulatory networks from multiple microarray datasets
    • Wang,Y., et al. (2006) Inferring gene regulatory networks from multiple microarray datasets. Bioinformatics, 22, 2413-2420.
    • (2006) Bioinformatics , vol.22 , pp. 2413-2420
    • Wang, Y.1
  • 30
    • 34249839449 scopus 로고
    • On affine-scaling algorithm for nonconvex quadratic programming
    • Ye,Y. (1992) On affine-scaling algorithm for nonconvex quadratic programming. Math. Programm., 56, 285-300.
    • (1992) Math. Programm , vol.56 , pp. 285-300
    • Ye, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.