-
1
-
-
33845604556
-
DNA double-strand break repair: All's well that ends well
-
DOI 10.1146/annurev.genet.40.110405.090451
-
Wyman C, Kanaar R (2006) DNA double-strand break repair: All's well that ends well. Annu Rev Genet 40:363-383. (Pubitemid 44956790)
-
(2006)
Annual Review of Genetics
, vol.40
, pp. 363-383
-
-
Wyman, C.1
Kanaar, R.2
-
2
-
-
65549095526
-
Nucleases and helicases take center stage in homologous recombination
-
Mimitou EP, Symington LS (2009) Nucleases and helicases take center stage in homologous recombination. Trends Biochem Sci 34(5):264-272.
-
(2009)
Trends Biochem Sci
, vol.34
, Issue.5
, pp. 264-272
-
-
Mimitou, E.P.1
Symington, L.S.2
-
3
-
-
76749090482
-
The processing of double-stranded DNA breaks for recombinational repair by helicase-nuclease complexes
-
Yeeles JT, Dillingham MS (2010) The processing of double-stranded DNA breaks for recombinational repair by helicase-nuclease complexes. DNA Repair 9(3):276-285.
-
(2010)
DNA Repair
, vol.9
, Issue.3
, pp. 276-285
-
-
Yeeles, J.T.1
Dillingham, M.S.2
-
4
-
-
77449156020
-
Characterization of the mycobacterial AdnAB DNA motor provides insights into the evolution of bacterial motor-nuclease machines
-
Unciuleac MC, Shuman S (2010) Characterization of the mycobacterial AdnAB DNA motor provides insights into the evolution of bacterial motor-nuclease machines. J Biol Chem 285(4):2632-2641.
-
(2010)
J Biol Chem
, vol.285
, Issue.4
, pp. 2632-2641
-
-
Unciuleac, M.C.1
Shuman, S.2
-
5
-
-
57349157777
-
RecBCD enzyme and the repair of double-stranded DNA breaks
-
Dillingham MS, Kowalczykowski SC (2008) RecBCD enzyme and the repair of double-stranded DNA breaks. Microbiol Mol Biol Rev 72(4):642-671.
-
(2008)
Microbiol Mol Biol Rev
, vol.72
, Issue.4
, pp. 642-671
-
-
Dillingham, M.S.1
Kowalczykowski, S.C.2
-
6
-
-
84871340015
-
Bacterial DNA repair: Recent insights into the mechanism of RecBCD, AddAB and AdnAB
-
Wigley DB (2013) Bacterial DNA repair: Recent insights into the mechanism of RecBCD, AddAB and AdnAB. Nat Rev Microbiol 11(1):9-13.
-
(2013)
Nat Rev Microbiol
, vol.11
, Issue.1
, pp. 9-13
-
-
Wigley, D.B.1
-
7
-
-
0027511858
-
The recombination hotspot chi is a regulatory sequence that acts by attenuating the nuclease activity of the E. coli RecBCD enzyme
-
DOI 10.1016/0092-8674(93)90162-J
-
Dixon DA, Kowalczykowski SC (1993) The recombination hotspot chi is a regulatory sequence that acts by attenuating the nuclease activity of the E. coli RecBCD enzyme. Cell 73(1):87-96. (Pubitemid 23115451)
-
(1993)
Cell
, vol.73
, Issue.1
, pp. 87-96
-
-
Dixon, D.A.1
Kowalczykowski, S.C.2
-
8
-
-
79959338446
-
Recombination hotspots and single-stranded DNA binding proteins couple DNA translocation to DNA unwinding by the AddAB helicase-nuclease
-
Yeeles JT, van Aelst K, Dillingham MS, Moreno-Herrero F (2011) Recombination hotspots and single-stranded DNA binding proteins couple DNA translocation to DNA unwinding by the AddAB helicase-nuclease. Mol Cell 42(6):806-816.
-
(2011)
Mol Cell
, vol.42
, Issue.6
, pp. 806-816
-
-
Yeeles, J.T.1
Van Aelst, K.2
Dillingham, M.S.3
Moreno-Herrero, F.4
-
9
-
-
0031444642
-
The translocating RecBCD enzyme stimulates recombination by directing RecA protein onto ssDNA in a chi-regulated manner
-
DOI 10.1016/S0092-8674(00)80315-3
-
Anderson DG, Kowalczykowski SC (1997) The translocating RecBCD enzyme stimulates recombination by directing RecA protein onto ssDNA in a chi-regulated manner. Cell 90(1):77-86. (Pubitemid 28009420)
-
(1997)
Cell
, vol.90
, Issue.1
, pp. 77-86
-
-
Anderson, D.G.1
Kowalczykowski, S.C.2
-
10
-
-
34848880455
-
Identification of DNA motifs implicated in maintenance of bacterial core genomes by predictive modeling
-
DOI 10.1371/journal.pgen.0030153
-
Halpern D, et al. (2007) Identification of DNA motifs implicated in maintenance of bacterial core genomes by predictive modeling. PLoS Genet 3(9):1614-1621. (Pubitemid 47510255)
-
(2007)
PLoS Genetics
, vol.3
, Issue.9
, pp. 1614-1621
-
-
Halpern, D.1
Chiapello, H.2
Schbath, S.3
Robin, S.4
Hennequet-Antier, C.5
Gruss, A.6
El, K.M.7
-
11
-
-
0030917148
-
The recombination hotspot Chi is recognized by the translocating RecBCD enzyme as the single strand of DNA containing the sequence 5?-GCTGGTGG-3?
-
Bianco PR, Kowalczykowski SC (1997) The recombination hotspot Chi is recognized by the translocating RecBCD enzyme as the single strand of DNA containing the sequence 5?-GCTGGTGG-3?. Proc Natl Acad Sci USA 94(13):6706-6711.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, Issue.13
, pp. 6706-6711
-
-
Bianco, P.R.1
Kowalczykowski, S.C.2
-
12
-
-
33745838577
-
The AddAB helicase/ nuclease forms a stable complex with its cognate chi sequence during translocation
-
Chédin F, Handa N, Dillingham MS, Kowalczykowski SC (2006) The AddAB helicase/ nuclease forms a stable complex with its cognate chi sequence during translocation. J Biol Chem 281(27):18610- 18617.
-
(2006)
J Biol Chem
, vol.281
, Issue.27
, pp. 18610-18617
-
-
Chédin, F.1
Handa, N.2
Dillingham, M.S.3
Kowalczykowski, S.C.4
-
13
-
-
0026720049
-
RecBCD enzyme is altered upon cutting DNA at a chi recombination hotspot
-
Taylor AF, Smith GR (1992) RecBCD enzyme is altered upon cutting DNA at a chi recombination hotspot. Proc Natl Acad Sci USA 89(12):5226-5230.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, Issue.12
, pp. 5226-5230
-
-
Taylor, A.F.1
Smith, G.R.2
-
14
-
-
9144271294
-
Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks
-
DOI 10.1038/nature02988
-
Singleton MR, Dillingham MS, Gaudier M, Kowalczykowski SC, Wigley DB (2004) Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks. Nature 432(7014):187-193. (Pubitemid 39545843)
-
(2004)
Nature
, vol.432
, Issue.7014
, pp. 187-193
-
-
Singleton, M.R.1
Dillingham, M.S.2
Gaudier, M.3
Kowalczykowski, S.C.4
Wigley, D.B.5
-
15
-
-
84858796420
-
Insights into Chi recognition from the structure of an AddAB-type helicase-nuclease complex
-
Saikrishnan K, et al. (2012) Insights into Chi recognition from the structure of an AddAB-type helicase-nuclease complex. EMBO J 31(6):1568-1578.
-
(2012)
EMBO J
, vol.31
, Issue.6
, pp. 1568-1578
-
-
Saikrishnan, K.1
-
16
-
-
84861889126
-
Molecular determinants responsible for recognition of the single-stranded DNA regulatory sequence,?, by RecBCD enzyme
-
Handa N, et al. (2012) Molecular determinants responsible for recognition of the single-stranded DNA regulatory sequence, ?, by RecBCD enzyme. Proc Natl Acad Sci USA 109(23):8901-8906.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.23
, pp. 8901-8906
-
-
Handa, N.1
-
17
-
-
84861860703
-
Alteration of? Recognition by RecBCD reveals a regulated molecular latch and suggests a channel-bypass mechanism for biological control
-
Yang L, et al. (2012) Alteration of ? recognition by RecBCD reveals a regulated molecular latch and suggests a channel-bypass mechanism for biological control. Proc Natl Acad Sci USA 109(23):8907-8912.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.23
, pp. 8907-8912
-
-
Yang, L.1
-
18
-
-
79953177394
-
The AddAB helicase-nuclease catalyses rapid and processive DNA unwinding using a single Superfamily 1A motor domain
-
Yeeles JT, Gwynn EJ, Webb MR, Dillingham MS (2011) The AddAB helicase-nuclease catalyses rapid and processive DNA unwinding using a single Superfamily 1A motor domain. Nucleic Acids Res 39(6):2271-2285.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.6
, pp. 2271-2285
-
-
Yeeles, J.T.1
Gwynn, E.J.2
Webb, M.R.3
Dillingham, M.S.4
-
19
-
-
0029937922
-
The elasticity of a single supercoiled DNA molecule
-
Strick TR, Allemand JF, Bensimon D, Bensimon A, Croquette V (1996) The elasticity of a single supercoiled DNA molecule. Science 271(5257):1835-1837. (Pubitemid 26112307)
-
(1996)
Science
, vol.271
, Issue.5257
, pp. 1835-1837
-
-
Strick, T.R.1
Allemand, J.-F.2
Bensimon, D.3
Bensimon, A.4
Croquette, V.5
-
20
-
-
0036111913
-
Magnetic tweezers: Micromanipulation and force measurement at the molecular level
-
Gosse C, Croquette V (2002) Magnetic tweezers: Micromanipulation and force measurement at the molecular level. Biophys J 82(6):3314-3329. (Pubitemid 34547674)
-
(2002)
Biophysical Journal
, vol.82
, Issue.6
, pp. 3314-3329
-
-
Gosse, C.1
Croquette, V.2
-
21
-
-
0141540814
-
A molecular throttle: The recombination hotspot chi controls DNA translocation by the RecBCD helicase
-
DOI 10.1016/S0092-8674(03)00681-0
-
Spies M, et al. (2003) A molecular throttle: The recombination hotspot chi controls DNA translocation by the RecBCD helicase. Cell 114(5):647-654. (Pubitemid 37159260)
-
(2003)
Cell
, vol.114
, Issue.5
, pp. 647-654
-
-
Spies, M.1
Bianco, P.R.2
Dillingham, M.S.3
Handa, N.4
Baskin, R.J.5
Kowalczykowski, S.C.6
-
22
-
-
36049052525
-
RecBCD Enzyme Switches Lead Motor Subunits in Response to chi Recognition
-
DOI 10.1016/j.cell.2007.09.023, PII S0092867407012111
-
Spies M, Amitani I, Baskin RJ, Kowalczykowski SC (2007) RecBCD enzyme switches lead motor subunits in response to chi recognition. Cell 131(4):694-705. (Pubitemid 350087199)
-
(2007)
Cell
, vol.131
, Issue.4
, pp. 694-705
-
-
Spies, M.1
Amitani, I.2
Baskin, R.J.3
Kowalczykowski, S.C.4
-
23
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
SantaLucia J, Jr. (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci USA 95(4):1460-1465.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, Issue.4
, pp. 1460-1465
-
-
SantaLucia Jr., J.1
-
24
-
-
27744507840
-
Velocity and processivity of helicase unwinding of double-stranded nucleic acids
-
DOI 10.1088/0953-8984/17/47/015, PII S0953898405078252
-
Betterton MD, Jülicher F (2005) Velocity and processivity of helicase unwinding of double-stranded nucleic acids. J Phys Condens Matter 17(47):S3851-S3869. (Pubitemid 41607429)
-
(2005)
Journal of Physics Condensed Matter
, vol.17
, Issue.47
-
-
Betterton, M.D.1
Julicher, F.2
-
25
-
-
77956523183
-
Active and passive mechanisms of helicases
-
Manosas M, Xi XG, Bensimon D, Croquette V (2010) Active and passive mechanisms of helicases. Nucleic Acids Res 38(16):5518-5526.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.16
, pp. 5518-5526
-
-
Manosas, M.1
Xi, X.G.2
Bensimon, D.3
Croquette, V.4
-
26
-
-
84861442263
-
Active DNA unwinding dynamics during processive DNA replication
-
Morin JA, et al. (2012) Active DNA unwinding dynamics during processive DNA replication. Proc Natl Acad Sci USA 109(21):8115-8120.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.21
, pp. 8115-8120
-
-
Morin, J.A.1
-
27
-
-
5244325378
-
Dynamical disorder: Passage through a fluctuating bottleneck
-
Zwanzig R (1992) Dynamical disorder: Passage through a fluctuating bottleneck. J Chem Phys 97:3587.
-
(1992)
J Chem Phys
, vol.97
, pp. 3587
-
-
Zwanzig, R.1
-
28
-
-
0001631778
-
Rate processes with dynamical disorder
-
Zwanzig R (1990) Rate processes with dynamical disorder. Acc Chem Res 23(5): 148-152.
-
(1990)
Acc Chem Res
, vol.23
, Issue.5
, pp. 148-152
-
-
Zwanzig, R.1
-
29
-
-
77955605175
-
PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps
-
Park J, et al. (2010) PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps. Cell 142(4):544-555.
-
(2010)
Cell
, vol.142
, Issue.4
, pp. 544-555
-
-
Park, J.1
-
30
-
-
77954902959
-
Probing static disorder in Arrhenius kinetics by single-molecule force spectroscopy
-
Kuo TL, et al. (2010) Probing static disorder in Arrhenius kinetics by single-molecule force spectroscopy. Proc Natl Acad Sci USA 107(25):11336-11340.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.25
, pp. 11336-11340
-
-
Kuo, T.L.1
-
31
-
-
33747375815
-
Probing 3′-ssDNA loop formation in E. Coli RecBCD/RecBC-DNA complexes using non-natural DNA: A model for "Chi" recognition complexes
-
Wong CJ, Rice RL, Baker NA, Ju T, Lohman TM (2006) Probing 3′-ssDNA loop formation in E. coli RecBCD/RecBC-DNA complexes using non-natural DNA: A model for "Chi" recognition complexes. J Mol Biol 362(1):26-43.
-
(2006)
J Mol Biol
, vol.362
, Issue.1
, pp. 26-43
-
-
Wong, C.J.1
Rice, R.L.2
Baker, N.A.3
Ju, T.4
Lohman, T.M.5
-
32
-
-
77955246025
-
Visualizing helicases unwinding DNA at the single molecule level
-
Fili N, et al. (2010) Visualizing helicases unwinding DNA at the single molecule level. Nucleic Acids Res 38(13):4448-4457.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.13
, pp. 4448-4457
-
-
Fili, N.1
-
33
-
-
77954378226
-
Single-molecule imaging of Bacteroides fragilis AddAB reveals the highly processive translocation of a single motor helicase
-
Reuter M, Parry F, Dryden DT, Blakely GW (2010) Single-molecule imaging of Bacteroides fragilis AddAB reveals the highly processive translocation of a single motor helicase. Nucleic Acids Res 38(11):3721-3731.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.11
, pp. 3721-3731
-
-
Reuter, M.1
Parry, F.2
Dryden, D.T.3
Blakely, G.W.4
-
34
-
-
1542375262
-
Forward and Reverse Motion of Single RecBCD Molecules on DNA
-
Perkins TT, Li HW, Dalal RV, Gelles J, Block SM (2004) Forward and reverse motion of single RecBCD molecules on DNA. Biophys J 86(3):1640-1648. (Pubitemid 38295598)
-
(2004)
Biophysical Journal
, vol.86
, Issue.3
, pp. 1640-1648
-
-
Perkins, T.T.1
Li, H.-W.2
Dalal, R.V.3
Gelles, J.4
Block, S.M.5
-
35
-
-
35348856329
-
NS3 helicase actively separates RNA strands and senses sequence barriers ahead of the opening fork
-
DOI 10.1073/pnas.0702315104
-
Cheng W, Dumont S, Tinoco I, Jr., Bustamante C (2007) NS3 helicase actively separates RNA strands and senses sequence barriers ahead of the opening fork. Proc Natl Acad Sci USA 104(35):13954-13959. (Pubitemid 350003319)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.35
, pp. 13954-13959
-
-
Cheng, W.1
Dumont, S.2
Tinoco Jr., I.3
Bustamante, C.4
-
36
-
-
65549152342
-
Studying RecBCD helicase translocation along Chi-DNA using tethered particle motion with a stretching force
-
Fan HF, Li HW (2009) Studying RecBCD helicase translocation along Chi-DNA using tethered particle motion with a stretching force. Biophys J 96(5):1875-1883.
-
(2009)
Biophys J
, vol.96
, Issue.5
, pp. 1875-1883
-
-
Fan, H.F.1
Li, H.W.2
-
37
-
-
0031895463
-
Behavior of supercoiled DNA
-
Strick TR, Allemand JF, Bensimon D, Croquette V (1998) Behavior of supercoiled DNA. Biophys J 74(4):2016 -2028.
-
(1998)
Biophys J
, vol.74
, Issue.4
, pp. 2016-2028
-
-
Strick, T.R.1
Allemand, J.F.2
Bensimon, D.3
Croquette, V.4
-
38
-
-
4344649856
-
Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I
-
Seidel R, et al. (2004) Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I. Nat Struct Mol Biol 11(9):838 -843.
-
(2004)
Nat Struct Mol Biol
, vol.11
, Issue.9
, pp. 838-843
-
-
Seidel, R.1
-
39
-
-
43449094034
-
Homologous Recombination in Real Time: DNA Strand Exchange by RecA
-
DOI 10.1016/j.molcel.2008.03.010, PII S1097276508002104
-
van der Heijden T, et al. (2008) Homologous recombination in real time: DNA strand exchange by RecA. Mol Cell 30(4):530-538. (Pubitemid 351672371)
-
(2008)
Molecular Cell
, vol.30
, Issue.4
, pp. 530-538
-
-
Van Der Heijden, T.1
Modesti, M.2
Hage, S.3
Kanaar, R.4
Wyman, C.5
Dekker, C.6
|