메뉴 건너뛰기




Volumn 8, Issue 7, 2013, Pages

Sexually-Transmitted/Founder HIV-1 Cannot Be Directly Predicted from Plasma or PBMC-Derived Viral Quasispecies in the Transmitting Partner

(114)  Frange, Pierre a,b   Meyer, Laurence c   Jung, Matthieu d   Goujard, Cecile c,e   Zucman, David f   Abel, Sylvie g   Hochedez, Patrick g   Gousset, Marine a,b   Gascuel, Olivier d   Rouzioux, Christine a,b   Chaix, Marie Laure a,b   Abraham, Bruno h   Allegre, Thierry i   Antoniotti, Odile j   Armero, Raymond k   Audhuy, Bruno l   Aumaitre, Hughes m   Beaucaire, Gilles n   Beck Wirth, Geneviève o   Berger, Jean Luc p   more..

c INSERM   (France)
d CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; HUMAN IMMUNODEFICIENCY VIRUS CORERECEPTOR; UNCLASSIFIED DRUG; VIRUS RECEPTOR; VIRUS RNA;

EID: 84879958709     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0069144     Document Type: Article
Times cited : (14)

References (48)
  • 1
    • 0037169213 scopus 로고    scopus 로고
    • Homogeneous quasispecies in 16 out of 17 individuals during very early HIV-1 primary infection
    • Delwart E, Magierowska M, Royz M, Foley B, Peddada L, et al. (2002) Homogeneous quasispecies in 16 out of 17 individuals during very early HIV-1 primary infection. AIDS 16: 189-195.
    • (2002) AIDS , vol.16 , pp. 189-195
    • Delwart, E.1    Magierowska, M.2    Royz, M.3    Foley, B.4    Peddada, L.5
  • 2
    • 12144289425 scopus 로고    scopus 로고
    • Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission
    • Derdeyn CA, Decker JM, Bibollet-Ruche F, Mokili JL, Muldoon M, et al. (2004) Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission. Science 303: 2019-2022.
    • (2004) Science , vol.303 , pp. 2019-2022
    • Derdeyn, C.A.1    Decker, J.M.2    Bibollet-Ruche, F.3    Mokili, J.L.4    Muldoon, M.5
  • 3
    • 0026695382 scopus 로고
    • HIV-1 genomic RNA diversification following sexual and parenteral virus transmission
    • Wolfs TF, Zwart G, Bakker M, Goudsmit J, (1992) HIV-1 genomic RNA diversification following sexual and parenteral virus transmission. Virology 189: 103-110.
    • (1992) Virology , vol.189 , pp. 103-110
    • Wolfs, T.F.1    Zwart, G.2    Bakker, M.3    Goudsmit, J.4
  • 4
    • 0027229245 scopus 로고
    • Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection
    • Zhang LQ, MacKenzie P, Cleland A, Holmes EC, Brown AJ, et al. (1993) Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection. J Virol 67: 3345-3356.
    • (1993) J Virol , vol.67 , pp. 3345-3356
    • Zhang, L.Q.1    MacKenzie, P.2    Cleland, A.3    Holmes, E.C.4    Brown, A.J.5
  • 5
    • 0027422278 scopus 로고
    • Genotypic and phenotypic characterization of HIV-1 patients with primary infection
    • Zhu T, Mo H, Wang N, Nam DS, Cao Y, et al. (1993) Genotypic and phenotypic characterization of HIV-1 patients with primary infection. Science 261: 1179-1181.
    • (1993) Science , vol.261 , pp. 1179-1181
    • Zhu, T.1    Mo, H.2    Wang, N.3    Nam, D.S.4    Cao, Y.5
  • 6
    • 0029998895 scopus 로고    scopus 로고
    • Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: evidence for viral compartmentalization and selection during sexual transmission
    • Zhu T, Wang N, Carr A, Nam DS, Moor-Jankowski R, et al. (1996) Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: evidence for viral compartmentalization and selection during sexual transmission. J Virol 70: 3098-3107.
    • (1996) J Virol , vol.70 , pp. 3098-3107
    • Zhu, T.1    Wang, N.2    Carr, A.3    Nam, D.S.4    Moor-Jankowski, R.5
  • 7
    • 0028783755 scopus 로고
    • Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1
    • Poss M, Martin HL, Kreiss JK, Granville L, Chohan B, et al. (1995) Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1. J Virol 69: 8118-8122.
    • (1995) J Virol , vol.69 , pp. 8118-8122
    • Poss, M.1    Martin, H.L.2    Kreiss, J.K.3    Granville, L.4    Chohan, B.5
  • 8
    • 4644300726 scopus 로고    scopus 로고
    • Incidence of HIV-1 dual infection and its association with increased viral load set point in a cohort of HIV-1 subtype C-infected female sex workers
    • Grobler J, Gray CM, Rademeyer C, Seoighe C, Ramjee G, et al. (2004) Incidence of HIV-1 dual infection and its association with increased viral load set point in a cohort of HIV-1 subtype C-infected female sex workers. J Infect Dis 190: 1355-1359.
    • (2004) J Infect Dis , vol.190 , pp. 1355-1359
    • Grobler, J.1    Gray, C.M.2    Rademeyer, C.3    Seoighe, C.4    Ramjee, G.5
  • 9
    • 0036260635 scopus 로고    scopus 로고
    • HIV type 1 variants transmitted to women in Kenya require the CCR5 coreceptor for entry, regardless of the genetic complexity of the infecting virus
    • Long EM, Rainwater SMJ, Lavreys L, Mandaliya K, Overbaugh J, (2002) HIV type 1 variants transmitted to women in Kenya require the CCR5 coreceptor for entry, regardless of the genetic complexity of the infecting virus. AIDS Res Hum Retroviruses 18: 567-576.
    • (2002) AIDS Res Hum Retroviruses , vol.18 , pp. 567-576
    • Long, E.M.1    Rainwater, S.M.J.2    Lavreys, L.3    Mandaliya, K.4    Overbaugh, J.5
  • 11
    • 4644296727 scopus 로고    scopus 로고
    • Multiple V1/V2 env variants are frequently present during primary infection with human immunodeficiency virus type 1
    • Ritola K, Pilcher CD, Fiscus SA, Hoffman NG, Nelson JAE, et al. (2004) Multiple V1/V2 env variants are frequently present during primary infection with human immunodeficiency virus type 1. J Virol 78: 11208-11218.
    • (2004) J Virol , vol.78 , pp. 11208-11218
    • Ritola, K.1    Pilcher, C.D.2    Fiscus, S.A.3    Hoffman, N.G.4    Nelson, J.A.E.5
  • 12
    • 2942665473 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 (HIV-1) diversity at time of infection is not restricted to certain risk groups or specific HIV-1 subtypes
    • Sagar M, Kirkegaard E, Long EM, Celum C, Buchbinder S, et al. (2004) Human immunodeficiency virus type 1 (HIV-1) diversity at time of infection is not restricted to certain risk groups or specific HIV-1 subtypes. J Virol 78: 7279-7283.
    • (2004) J Virol , vol.78 , pp. 7279-7283
    • Sagar, M.1    Kirkegaard, E.2    Long, E.M.3    Celum, C.4    Buchbinder, S.5
  • 13
    • 44649102135 scopus 로고    scopus 로고
    • Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
    • Keele BF, Giorgi EE, Salazar-Gonzalez JF, Decker JM, Pham KT, et al. (2008) Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc Natl Acad Sci U.S.A. 105: 7552-7557.
    • (2008) Proc Natl Acad Sci U.S.A , vol.105 , pp. 7552-7557
    • Keele, B.F.1    Giorgi, E.E.2    Salazar-Gonzalez, J.F.3    Decker, J.M.4    Pham, K.T.5
  • 14
    • 41949124934 scopus 로고    scopus 로고
    • Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing
    • Salazar-Gonzalez JF, Bailes E, Pham KT, Salazar MG, Guffey MB, et al. (2008) Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing. J Virol 82: 3952-3970.
    • (2008) J Virol , vol.82 , pp. 3952-3970
    • Salazar-Gonzalez, J.F.1    Bailes, E.2    Pham, K.T.3    Salazar, M.G.4    Guffey, M.B.5
  • 15
    • 64049089430 scopus 로고    scopus 로고
    • Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants
    • Abrahams M-R, Anderson JA, Giorgi EE, Seoighe C, Mlisana K, et al. (2009) Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants. J Virol 83: 3556-3567.
    • (2009) J Virol , vol.83 , pp. 3556-3567
    • Abrahams, M.-R.1    Anderson, J.A.2    Giorgi, E.E.3    Seoighe, C.4    Mlisana, K.5
  • 16
    • 59249096215 scopus 로고    scopus 로고
    • Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1
    • Haaland RE, Hawkins PA, Salazar-Gonzalez J, Johnson A, Tichacek A, et al. (2009) Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1. PLoS Pathog 5: e1000274.
    • (2009) PLoS Pathog , vol.5
    • Haaland, R.E.1    Hawkins, P.A.2    Salazar-Gonzalez, J.3    Johnson, A.4    Tichacek, A.5
  • 17
    • 77954051000 scopus 로고    scopus 로고
    • High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men
    • Li H, Bar KJ, Wang S, Decker JM, Chen Y, et al. (2010) High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men. PLoS Pathog 6: e1000890.
    • (2010) PLoS Pathog , vol.6
    • Li, H.1    Bar, K.J.2    Wang, S.3    Decker, J.M.4    Chen, Y.5
  • 18
    • 67651119957 scopus 로고    scopus 로고
    • No evidence of a change in HIV-1 virulence since 1996 in France
    • Troude P, Chaix ML, Tran L, Deveau C, Seng R, et al. (2009) No evidence of a change in HIV-1 virulence since 1996 in France. AIDS 23: 1261-1267.
    • (2009) AIDS , vol.23 , pp. 1261-1267
    • Troude, P.1    Chaix, M.L.2    Tran, L.3    Deveau, C.4    Seng, R.5
  • 19
    • 12144287630 scopus 로고    scopus 로고
    • Stable prevalence of genotypic drug resistance mutations but increase in non-B virus among patients with primary HIV-1 infection in France
    • Chaix ML, Descamps D, Harzic M, Schneider V, Deveau C, et al. (2003) Stable prevalence of genotypic drug resistance mutations but increase in non-B virus among patients with primary HIV-1 infection in France. AIDS 17: 2635-2643.
    • (2003) AIDS , vol.17 , pp. 2635-2643
    • Chaix, M.L.1    Descamps, D.2    Harzic, M.3    Schneider, V.4    Deveau, C.5
  • 21
    • 0030977113 scopus 로고    scopus 로고
    • Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays
    • Rodrigo AG, Goracke PC, Rowhanian K, Mullins JI, (1997) Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays. AIDS Res Hum Retroviruses 13: 737-742.
    • (1997) AIDS Res Hum Retroviruses , vol.13 , pp. 737-742
    • Rodrigo, A.G.1    Goracke, P.C.2    Rowhanian, K.3    Mullins, J.I.4
  • 22
    • 77957804695 scopus 로고    scopus 로고
    • Low frequency of CXCR4-using viruses in patients at the time of primary non-subtype-B HIV-1 infection
    • Frange P, Chaix ML, Raymond S, Galimand J, Deveau C, et al. (2010) Low frequency of CXCR4-using viruses in patients at the time of primary non-subtype-B HIV-1 infection. J Clin Microbiol 48: 3487-3491.
    • (2010) J Clin Microbiol , vol.48 , pp. 3487-3491
    • Frange, P.1    Chaix, M.L.2    Raymond, S.3    Galimand, J.4    Deveau, C.5
  • 23
    • 0030629330 scopus 로고    scopus 로고
    • Sequence Navigator. Multiple sequence alignment software
    • Parker SR, (1997) Sequence Navigator. Multiple sequence alignment software. Methods Mol Biol 70: 145-154.
    • (1997) Methods Mol Biol , vol.70 , pp. 145-154
    • Parker, S.R.1
  • 24
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 25
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M, (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 26
    • 3342920601 scopus 로고    scopus 로고
    • Prospects for inferring very large phylogenies by using the neighbor-joining method
    • Tamura K, Nei M, Kumar S, (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U.S.A. 101: 11030-11035.
    • (2004) Proc Natl Acad Sci U.S.A , vol.101 , pp. 11030-11035
    • Tamura, K.1    Nei, M.2    Kumar, S.3
  • 27
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 28
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M, (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 29
    • 24744441025 scopus 로고    scopus 로고
    • Development and validation of an immunoassay for identification of recent human immunodeficiency virus type 1 infections and its use on dried serum spots
    • Barin F, Meyer L, Lancar R, Deveau C, Gharib M, et al. (2005) Development and validation of an immunoassay for identification of recent human immunodeficiency virus type 1 infections and its use on dried serum spots. J Clin Microbiol 43: 4441-4447.
    • (2005) J Clin Microbiol , vol.43 , pp. 4441-4447
    • Barin, F.1    Meyer, L.2    Lancar, R.3    Deveau, C.4    Gharib, M.5
  • 30
    • 69449101717 scopus 로고    scopus 로고
    • Performance of an immunoassay at detecting recent infection among reported HIV diagnoses
    • Le Vu S, Meyer L, Cazein F, Pillonel J, Semaille C, et al. (2009) Performance of an immunoassay at detecting recent infection among reported HIV diagnoses. AIDS 23: 1773-1779.
    • (2009) AIDS , vol.23 , pp. 1773-1779
    • Le Vu, S.1    Meyer, L.2    Cazein, F.3    Pillonel, J.4    Semaille, C.5
  • 31
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment
    • Katoh K, Kuma K, Toh H, Miyata T, (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33: 511-518.
    • (2005) Nucleic Acids Res , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 32
  • 34
    • 45849122039 scopus 로고    scopus 로고
    • Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
    • Minin VN, Bloomquist EW, Suchard MA, (2008) Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol Biol Evol 25: 1459-1471.
    • (2008) Mol Biol Evol , vol.25 , pp. 1459-1471
    • Minin, V.N.1    Bloomquist, E.W.2    Suchard, M.A.3
  • 36
    • 42549113127 scopus 로고    scopus 로고
    • HIV-1 variation before seroconversion in men who have sex with men: analysis of acute/early HIV infection in the multicenter AIDS cohort study
    • Gottlieb GS, Heath L, Nickle DC, Wong KG, Leach SE, et al. (2008) HIV-1 variation before seroconversion in men who have sex with men: analysis of acute/early HIV infection in the multicenter AIDS cohort study. J Infect Dis 197: 1011-1015.
    • (2008) J Infect Dis , vol.197 , pp. 1011-1015
    • Gottlieb, G.S.1    Heath, L.2    Nickle, D.C.3    Wong, K.G.4    Leach, S.E.5
  • 37
    • 0036888937 scopus 로고    scopus 로고
    • Virus population homogenization following acute human immunodeficiency virus type 1 infection
    • Learn GH, Muthui D, Brodie SJ, Zhu T, Diem K, et al. (2002) Virus population homogenization following acute human immunodeficiency virus type 1 infection. J Virol 76: 11953-11959.
    • (2002) J Virol , vol.76 , pp. 11953-11959
    • Learn, G.H.1    Muthui, D.2    Brodie, S.J.3    Zhu, T.4    Diem, K.5
  • 40
    • 84867562000 scopus 로고    scopus 로고
    • Previously transmitted HIV-1 strains are preferentially selected during subsequent sexual transmissions
    • Redd AD, Collinson-Streng AN, Chatziandreou N, Mullis CE, Laeyendecker O, et al. (2012) Previously transmitted HIV-1 strains are preferentially selected during subsequent sexual transmissions. J Infect Dis 206: 1433-1442.
    • (2012) J Infect Dis , vol.206 , pp. 1433-1442
    • Redd, A.D.1    Collinson-Streng, A.N.2    Chatziandreou, N.3    Mullis, C.E.4    Laeyendecker, O.5
  • 41
    • 81855211496 scopus 로고    scopus 로고
    • Characterization of human immunodeficiency virus type 1 (HIV-1) diversity and tropism in 145 patients with primary HIV-1 infection
    • Rieder P, Joos B, Scherrer AU, Kuster H, Braun D, et al. (2011) Characterization of human immunodeficiency virus type 1 (HIV-1) diversity and tropism in 145 patients with primary HIV-1 infection. Clin Infect Dis 53: 1271-9.
    • (2011) Clin Infect Dis , vol.53 , pp. 1271-1279
    • Rieder, P.1    Joos, B.2    Scherrer, A.U.3    Kuster, H.4    Braun, D.5
  • 42
    • 1642369382 scopus 로고    scopus 로고
    • Identification of modifiable factors that affect the genetic diversity of the transmitted HIV-1 population
    • Sagar M, Lavreys L, Baeten JM, Richardson BA, Mandaliya K, et al. (2004) Identification of modifiable factors that affect the genetic diversity of the transmitted HIV-1 population. AIDS 18: 615-619.
    • (2004) AIDS , vol.18 , pp. 615-619
    • Sagar, M.1    Lavreys, L.2    Baeten, J.M.3    Richardson, B.A.4    Mandaliya, K.5
  • 43
    • 13744260977 scopus 로고    scopus 로고
    • Semen-specific genetic characteristics of human immunodeficiency virus type 1 env
    • Pillai SK, Good B, Pond SK, Wong JK, Strain MC, et al. (2005) Semen-specific genetic characteristics of human immunodeficiency virus type 1 env. J Virol 79: 1734-1742.
    • (2005) J Virol , vol.79 , pp. 1734-1742
    • Pillai, S.K.1    Good, B.2    Pond, S.K.3    Wong, J.K.4    Strain, M.C.5
  • 44
    • 84868542868 scopus 로고    scopus 로고
    • Female genital tract shedding of CXCR4-tropic HIV Type 1 is associated with a majority population of CXCR4-tropic HIV Type 1 in blood and declining CD4(+) cell counts
    • Haaland RE, Sullivan ST, Evans-Strickfaden T, Lennox JL, Hart CE, (2012) Female genital tract shedding of CXCR4-tropic HIV Type 1 is associated with a majority population of CXCR4-tropic HIV Type 1 in blood and declining CD4(+) cell counts. AIDS Res Hum Retroviruses 28: 1524-1532.
    • (2012) AIDS Res Hum Retroviruses , vol.28 , pp. 1524-1532
    • Haaland, R.E.1    Sullivan, S.T.2    Evans-Strickfaden, T.3    Lennox, J.L.4    Hart, C.E.5
  • 45
    • 33645046393 scopus 로고    scopus 로고
    • Selective transmission of CCR5-utilizing HIV-1: the "gatekeeper" problem resolved
    • Margolis L, Shattock R, (2006) Selective transmission of CCR5-utilizing HIV-1: the "gatekeeper" problem resolved? Nat Rev Microbiol 4: 312-317.
    • (2006) Nat Rev Microbiol , vol.4 , pp. 312-317
    • Margolis, L.1    Shattock, R.2
  • 46
    • 79251508013 scopus 로고    scopus 로고
    • Selective transmission of R5 HIV-1 variants: where is the gatekeeper
    • Grivel JC, Shattock RJ, Margolis LB, (2011) Selective transmission of R5 HIV-1 variants: where is the gatekeeper? J Transl Med 9(Suppl 1): S6.
    • (2011) J Transl Med , vol.9
    • Grivel, J.C.1    Shattock, R.J.2    Margolis, L.B.3
  • 48
    • 84555195622 scopus 로고    scopus 로고
    • Presence of CXCR4-using HIV-1 in patients with recently diagnosed infection: correlates and evidence for transmission
    • Chalmet K, Dauwe K, Foquet L, Baatz F, Seguin-Devaux C, et al. (2012) Presence of CXCR4-using HIV-1 in patients with recently diagnosed infection: correlates and evidence for transmission. J Infect Dis 205: 174-184.
    • (2012) J Infect Dis , vol.205 , pp. 174-184
    • Chalmet, K.1    Dauwe, K.2    Foquet, L.3    Baatz, F.4    Seguin-Devaux, C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.