-
1
-
-
33750297873
-
HIV evolutionary dynamics within and among hosts
-
Lemey P, Rambaut A, Pybus OG. HIV evolutionary dynamics within and among hosts. AIDS Rev 2006; 8:125-40. (Pubitemid 44614030)
-
(2006)
AIDS Reviews
, vol.8
, Issue.3
, pp. 125-140
-
-
Lemey, P.1
Rambaut, A.2
Pybus, O.G.3
-
3
-
-
0027436702
-
Increasing antigenic and genetic diversity of the V3 variable domain of the human immunodeficiency virus envelope protein in the course of the AIDS epidemic
-
DOI 10.1073/pnas.90.19.9061
-
Kuiken CL, Zwart G, Baan E, Coutinho RA, van den Hoek JA, Goudsmit J. Increasing antigenic and genetic diversity of the V3 variable domain of the human immunodeficiency virus envelope protein in the course of the AIDS epidemic. Proc Natl Acad Sci U S A 1993; 90:9061-5. (Pubitemid 23306451)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.19
, pp. 9061-9065
-
-
Kuiken, C.L.1
Zwart, G.2
Baan, E.3
Coutinho, R.A.4
Van Den Hoek, J.A.R.5
Goudsmit, J.6
-
4
-
-
0026551082
-
Selective transmission of human immunodeficiency virus type-1 variants from mothers to infants
-
Wolinsky SM, Wike CM, Korber BT, et al. Selective transmission of human immunodeficiency virus type-1 variants from mothers to infants. Science 1992; 255:1134-7.
-
(1992)
Science
, vol.255
, pp. 1134-1137
-
-
Wolinsky, S.M.1
Wike, C.M.2
Korber, B.T.3
-
5
-
-
0027422278
-
Genotypic and phenotypic characterization of HIV-1 in patients with primary infection
-
Zhu T, Mo H,Wang N, et al. Genotypic and phenotypic characterization of HIV-1 patients with primary infection. Science 1993; 261:1179-81. (Pubitemid 23300886)
-
(1993)
Science
, vol.261
, Issue.5125
, pp. 1179-1181
-
-
Zhu, T.1
Mo, H.2
Wang, N.3
Nam, D.S.4
Cao, Y.5
Koup, R.A.6
Ho, D.D.7
-
6
-
-
0028783755
-
Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1
-
Poss M, Martin HL, Kreiss JK, et al. Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1. J Virol 1995; 69:8118-22.
-
(1995)
J Virol
, vol.69
, pp. 8118-8122
-
-
Poss, M.1
Martin, H.L.2
Kreiss, J.K.3
-
7
-
-
67449147145
-
The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection
-
Goonetilleke N, Liu MK, Salazar-Gonzalez JF, et al. The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection. J Exp Med 2009; 206:1253-72.
-
(2009)
J Exp Med
, vol.206
, pp. 1253-1272
-
-
Goonetilleke, N.1
Liu, M.K.2
Salazar-Gonzalez, J.F.3
-
8
-
-
70349778470
-
Modeling sequence evolution in acute HIV-1 infection
-
Lee HY, Giorgi EE, Keele BF, et al. Modeling sequence evolution in acute HIV-1 infection. J Theor Biol 2009; 261:341-60.
-
(2009)
J Theor Biol
, vol.261
, pp. 341-360
-
-
Lee, H.Y.1
Giorgi, E.E.2
Keele, B.F.3
-
9
-
-
70349695689
-
Escape from autologous neutralizing antibodies in acute/early subtype C HIV-1 infection requires multiple pathways
-
Rong R, Li B, Lynch RM, et al. Escape from autologous neutralizing antibodies in acute/early subtype C HIV-1 infection requires multiple pathways. PLoS Pathog 2009; 5:e1000594.
-
(2009)
PLoS Pathog
, vol.5
-
-
Rong, R.1
Li, B.2
Lynch, R.M.3
-
10
-
-
66049139947
-
Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
-
Salazar-Gonzalez JF, Salazar MG, Keele BF, et al. Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection. J Exp Med 2009; 206:1273-89.
-
(2009)
J Exp Med
, vol.206
, pp. 1273-1289
-
-
Salazar-Gonzalez, J.F.1
Salazar, M.G.2
Keele, B.F.3
-
11
-
-
44649102135
-
Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
-
DOI 10.1073/pnas.0802203105
-
Keele BF, Giorgi EE, Salazar-Gonzalez JF, et al. Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc Natl Acad Sci U S A 2008; 105:7552-7. (Pubitemid 351830056)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.21
, pp. 7552-7557
-
-
Keele, B.F.1
Giorgi, E.E.2
Salazar-Gonzalez, J.F.3
Decker, J.M.4
Pham, K.T.5
Salazar, M.G.6
Sun, C.7
Grayson, T.8
Wang, S.9
Li, H.10
Wei, X.11
Jiang, C.12
Kirchherr, J.L.13
Gao, F.14
Anderson, J.A.15
Ping, L.-H.16
Swanstrom, R.17
Tomaras, G.D.18
Blattner, W.A.19
Goepfert, P.A.20
Kilby, J.M.21
Saag, M.S.22
Delwart, E.L.23
Busch, M.P.24
Cohen, M.S.25
Montefiori, D.C.26
Haynes, B.F.27
Gaschen, B.28
Athreya, G.S.29
Lee, H.Y.30
Wood, N.31
Seoighe, C.32
Perelson, A.S.33
Bhattacharya, T.34
Korber, B.T.35
Hahn, B.H.36
Shaw, G.M.37
more..
-
12
-
-
12144289425
-
Envelope-Constrained Neutralization-Sensitive HIV-1 after Heterosexual Transmission
-
DOI 10.1126/science.1093137
-
Derdeyn CA, Decker JM, Bibollet-Ruche F, et al. Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission. Science 2004; 303:2019-22. (Pubitemid 38393277)
-
(2004)
Science
, vol.303
, Issue.5666
, pp. 2019-2022
-
-
Derdeyn, C.A.1
Decker, J.M.2
Bibollet-Ruche, F.3
Mokili, J.L.4
Muldoon, M.5
Denham, S.A.6
Heil, M.L.7
Kasolo, F.8
Musonda, R.9
Hahn, B.H.10
Shaw, G.M.11
Korber, B.T.12
Allen, S.13
Hunter, E.14
-
13
-
-
18144397438
-
Selection for human immunodeficiency virus type 1 envelope glycosylation variants with shorter V1-V2 loop sequences occurs during transmission of certain genetic subtypes and may impact viral RNA levels
-
DOI 10.1128/JVI.79.10.6528-6531.2005
-
Chohan B, Lang D, Sagar M, et al. Selection for human immunodeficiency virus type 1 envelope glycosylation variants with shorter V1-V2 loop sequences occurs during transmission of certain genetic subtypes and may impact viral RNA levels. J Virol 2005; 79:6528-31. (Pubitemid 40617257)
-
(2005)
Journal of Virology
, vol.79
, Issue.10
, pp. 6528-6531
-
-
Chohan, B.1
Lang, D.2
Sagar, M.3
Korber, B.4
Lavreys, L.5
Richardson, B.6
Overbaugh, J.7
-
14
-
-
0033978489
-
Gender differences in HIV-1 diversity at time of infection
-
DOI 10.1038/71563
-
Long EM, Martin HL Jr, Kreiss JK, et al. Gender differences in HIV-1 diversity at time of infection. Nat Med 2000; 6:71-5. (Pubitemid 30048529)
-
(2000)
Nature Medicine
, vol.6
, Issue.1
, pp. 71-75
-
-
Long, E.M.1
Martin Jr., H.L.2
Kreiss, J.K.3
Rainwater, S.M.J.4
Lavreys, L.5
Jackson, D.J.6
Rakwar, J.7
Mandaliya, K.8
Overbaugh, J.9
-
15
-
-
1642369382
-
Identification of modifiable factors that affect the genetic diversity of the transmitted HIV-1 population
-
DOI 10.1097/00002030-200403050-00005
-
Sagar M, Lavreys L, Baeten JM, et al. Identification of modifiable factors that affect the genetic diversity of the transmitted HIV-1 population. AIDS 2004; 18:615-9. (Pubitemid 38393460)
-
(2004)
AIDS
, vol.18
, Issue.4
, pp. 615-619
-
-
Sagar, M.1
Lavreys, L.2
Baeten, J.M.3
Richardson, B.A.4
Mandaliya, K.5
Ndinya-Achola, J.O.6
Kreiss, J.K.7
Overbaugh, J.8
-
16
-
-
77951980565
-
Mathematical modeling of ultradeep sequencing data reveals that acute CD8+ T-lymphocyte responses exert strong selective pressure in simian immunodeficiency virus-infected macaques but still fail to clear founder epitope sequences
-
Love TM, Thurston SW, Keefer MC, Dewhurst S, Lee HY. Mathematical modeling of ultradeep sequencing data reveals that acute CD8+ T-lymphocyte responses exert strong selective pressure in simian immunodeficiency virus-infected macaques but still fail to clear founder epitope sequences. J Virol 2010; 84:5802-14.
-
(2010)
J Virol
, vol.84
, pp. 5802-5814
-
-
Love, T.M.1
Thurston, S.W.2
Keefer, M.C.3
Dewhurst, S.4
Lee, H.Y.5
-
17
-
-
77952678708
-
Wide variation in the multiplicity of HIV-1 infection among injection drug users
-
Bar KJ, Li H, Chamberland A, et al.Wide variation in the multiplicity of HIV-1 infection among injection drug users. J Virol 2010; 84:6241-7.
-
(2010)
J Virol
, vol.84
, pp. 6241-6247
-
-
Bar, K.J.1
Li, H.2
Chamberland, A.3
-
18
-
-
0033971925
-
Sex and the genetic diversity of HIV-1
-
DOI 10.1038/71487
-
Ray SC, Quinn TC. Sex and the genetic diversity of HIV-1. Nat Med 2000; 6:23-5. (Pubitemid 30048515)
-
(2000)
Nature Medicine
, vol.6
, Issue.1
, pp. 23-25
-
-
Ray, S.C.1
Quinn, T.C.2
-
19
-
-
61849171106
-
Selection of HIV variants with signature genotypic characteristics during heterosexual transmission
-
Sagar M, Laeyendecker O, Lee S, et al. Selection of HIV variants with signature genotypic characteristics during heterosexual transmission. J Infect Dis 2009; 199:580-9.
-
(2009)
J Infect Dis
, vol.199
, pp. 580-589
-
-
Sagar, M.1
Laeyendecker, O.2
Lee, S.3
-
20
-
-
7144226601
-
A randomized, community trial of intensive sexually transmitted disease control for AIDS prevention, Rakai, Uganda
-
DOI 10.1097/00002030-199810000-00014
-
Wawer MJ, Gray RH, Sewankambo NK, et al. A randomized, community trial of intensive sexually transmitted disease control for AIDS prevention, Rakai, Uganda. AIDS 1998; 12:1211-25. (Pubitemid 28302424)
-
(1998)
AIDS
, vol.12
, Issue.10
, pp. 1211-1225
-
-
Wawer, M.J.1
Gray, R.H.2
Sewankambo, N.K.3
Serwadda, D.4
Paxton, L.5
Berkley, S.6
McNairn, D.7
Wabwire-Mangen, F.8
Li, C.9
Nalugoda, F.10
Kiwanuka, N.11
Lutalo, T.12
Brookmeyer, R.13
Kelly, R.14
Quinn, T.C.15
-
21
-
-
77954059111
-
HIV-1 transmitting couples have similar viral load set-points in Rakai, Uganda
-
Hollingsworth TD, Laeyendecker O, Shirreff G, et al. HIV-1 transmitting couples have similar viral load set-points in Rakai, Uganda. PLoS Pathog 2010; 6:e1000876.
-
(2010)
PLoS Pathog
, vol.6
-
-
Hollingsworth, T.D.1
Laeyendecker, O.2
Shirreff, G.3
-
22
-
-
70449467617
-
Geographic HIV type 1 subtype distribution in Rakai district, Uganda
-
Collinson-Streng AN, Redd AD, Sewankambo NK, et al. Geographic HIV type 1 subtype distribution in Rakai district, Uganda. AIDS Res Hum Retroviruses 2009; 25:1045-8.
-
(2009)
AIDS Res Hum Retroviruses
, vol.25
, pp. 1045-1048
-
-
Collinson-Streng, A.N.1
Redd, A.D.2
Sewankambo, N.K.3
-
23
-
-
0034045242
-
Detection of diverse variants of human immunodeficiency virus-1 groups M, N, and O and simian immunodeficiency viruses from chimpanzees by using generic pol and env primer pairs
-
DOI 10.1086/315439
-
Yang C, Dash BC, Simon F, et al. Detection of diverse variants of human immunodeficiency virus-1 groups M, N, and O and simian immunodeficiency viruses from chimpanzees by using generic pol and env primer pairs. J Infect Dis 2000; 181:1791-5. (Pubitemid 30387779)
-
(2000)
Journal of Infectious Diseases
, vol.181
, Issue.5
, pp. 1791-1795
-
-
Yang, C.1
Dash, B.C.2
Simon, F.3
Van Der Groen, G.4
Pieniazek, D.5
Gao, F.6
Hahn, B.H.7
Lal, R.B.8
-
24
-
-
0035283090
-
Predominance of HIV type 1 subtype G among commercial sex workers from Kinshasa, Democratic Republic of Congo
-
DOI 10.1089/08892220150503726
-
Yang C, Dash B, Hanna SL, et al. Predominance of HIV type 1 subtype G among commercial sex workers from Kinshasa, Democratic Republic of Congo. AIDS Res Hum Retroviruses 2001; 17:361-5. (Pubitemid 32174818)
-
(2001)
AIDS Research and Human Retroviruses
, vol.17
, Issue.4
, pp. 361-365
-
-
Yang, C.1
Dash, B.2
Hanna, S.L.3
Frances, H.S.4
Nzilambi, N.5
Colebunders, R.C.6
St. Louis, M.7
Quinn, T.C.8
Folks, T.M.9
Lal, R.B.10
-
25
-
-
77958167072
-
Changes in the distribution of HIV type 1 subtypes D and A in Rakai District, Uganda between 1994 and 2002
-
Conroy SA, Laeyendecker O, Redd AD, et al. Changes in the distribution of HIV type 1 subtypes D and A in Rakai District, Uganda between 1994 and 2002. AIDS Res Hum Retroviruses 2010; 26:1087-91.
-
(2010)
AIDS Res Hum Retroviruses
, vol.26
, pp. 1087-1091
-
-
Conroy, S.A.1
Laeyendecker, O.2
Redd, A.D.3
-
26
-
-
37349012862
-
Chronic HIV-1 infection frequently fails to protect against superinfection
-
Piantadosi A, Chohan B, Chohan V, McClelland RS, Overbaugh J. Chronic HIV-1 infection frequently fails to protect against superinfection. PLoS Pathog 2007; 3:e177.
-
(2007)
PLoS Pathog
, vol.3
-
-
Piantadosi, A.1
Chohan, B.2
Chohan, V.3
McClelland, R.S.4
Overbaugh, J.5
-
27
-
-
70349273723
-
Human immunodeficiency virus type 1 V1-to-V5 envelope variants from the chronic phase of infection use CCR5 and fuse more efficiently than those from early after infection
-
Etemad B, Fellows A, Kwambana B, et al. Human immunodeficiency virus type 1 V1-to-V5 envelope variants from the chronic phase of infection use CCR5 and fuse more efficiently than those from early after infection. J Virol 2009; 83:9694-708.
-
(2009)
J Virol
, vol.83
, pp. 9694-9708
-
-
Etemad, B.1
Fellows, A.2
Kwambana, B.3
-
28
-
-
72949117881
-
HIV-1 subtypes and differences in heterosexual transmission of HIV among HIV-1 discordant couples in Rakai, Uganda
-
Kiwanuka N, Laeyendecker O, Gray RH, et al. HIV-1 subtypes and differences in heterosexual transmission of HIV among HIV-1 discordant couples in Rakai, Uganda. AIDS 2009; 23:2479-84.
-
(2009)
AIDS
, vol.23
, pp. 2479-2484
-
-
Kiwanuka, N.1
Laeyendecker, O.2
Gray, R.H.3
-
29
-
-
79960940822
-
Identification of HIV superinfection in seroconcordant couples in Rakai, Uganda using next generation deep sequencing
-
Redd AD, Collinson-Streng A, Martens C, et al. Identification of HIV superinfection in seroconcordant couples in Rakai, Uganda using next generation deep sequencing. J Clin Microbiol 2011; 49:2859-67.
-
(2011)
J Clin Microbiol
, vol.49
, pp. 2859-2867
-
-
Redd, A.D.1
Collinson-Streng, A.2
Martens, C.3
-
30
-
-
0031773680
-
MODELTEST: Testing the model of DNA substitution
-
Posada D, Crandall KA. MODELTEST: Testing the model of DNA substitution. Bioinformatics 1998; 14:817-8. (Pubitemid 28552116)
-
(1998)
Bioinformatics
, vol.14
, Issue.9
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
32
-
-
81055124999
-
Analysis of genetic linkage of HIV from couples enrolled in the HIV Prevention Trials Network 052 trial
-
Eshleman SH, Hudelson SE, Redd AD, et al. Analysis of genetic linkage of HIV from couples enrolled in the HIV Prevention Trials Network 052 trial. J Infect Dis 2011; 204:1918-26.
-
(2011)
J Infect Dis
, vol.204
, pp. 26
-
-
Eshleman, S.H.1
Hudelson, S.E.2
Redd, A.D.3
-
33
-
-
77958167072
-
Changes in the distribution of HIV-1 subtypes D and A in Rakai District, Uganda between 1994 and 2002
-
Conroy SA, Laeyendecker O, Redd AD, et al. Changes in the distribution of HIV-1 subtypes D and A in Rakai District, Uganda between 1994 and 2002. AIDS Res Hum Retroviruses 2010; 26:1087-91.
-
(2010)
AIDS Res Hum Retroviruses
, vol.26
, pp. 108710-91
-
-
Conroy, S.A.1
Laeyendecker, O.2
Redd, A.D.3
-
35
-
-
72849114288
-
Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution
-
Abecasis AB, Vandamme AM, Lemey P. Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution. J Virol 2009; 83:12917-24.
-
(2009)
J Virol
, vol.83
, pp. 12917-12924
-
-
Abecasis, A.B.1
Vandamme, A.M.2
Lemey, P.3
-
36
-
-
0347989161
-
The causes and consequences of HIV evolution
-
DOI 10.1038/nrg1246
-
Rambaut A, Posada D, Crandall KA, Holmes EC. The causes and consequences of HIV evolution. Nat Rev Genet 2004; 5:52-61. (Pubitemid 38055336)
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.1
, pp. 52-61
-
-
Rambaut, A.1
Posada, D.2
Crandall, K.A.3
Holmes, E.C.4
-
37
-
-
84555195615
-
Transmission of the X4 phenotype Of HIV-1: Is there evidence against the random transmission hypothesis?
-
Hedskog C, Mild M, Albert J. Transmission of the X4 phenotype of HIV-1: Is there evidence against the "random transmission" hypothesis? J Infect Dis 2012; 205:163-5.
-
(2012)
J Infect Dis
, vol.205
, pp. 163-165
-
-
Hedskog, C.1
Mild, M.2
Albert, J.3
-
38
-
-
79952232531
-
Genital tract sequestration of SIV following acute infection
-
Whitney JB, Hraber PT, Luedemann C, et al. Genital tract sequestration of SIV following acute infection. PLoS Pathog 2011; 7: E1001293.
-
(2011)
PLoS Pathog
, vol.7
-
-
Whitney, J.B.1
Hraber, P.T.2
Luedemann, C.3
-
39
-
-
67249140561
-
HIV evolution in early infection: Selection pressures, patterns of insertion and deletion, and the impact of APOBEC
-
Wood N, Bhattacharya T, Keele BF, et al. HIV evolution in early infection: Selection pressures, patterns of insertion and deletion, and the impact of APOBEC. PLoS Pathog 2009; 5:e1000414.
-
(2009)
PLoS Pathog
, vol.5
-
-
Wood, N.1
Bhattacharya, T.2
Keele, B.F.3
-
40
-
-
79952232940
-
The genotype of early-transmitting HIV gp120s promotes alpha (4) beta(7)-reactivity, revealing alpha (4) beta(7) +/CD4+ T cells as key targets in mucosal transmission
-
Nawaz F, Cicala C, Van Ryk D, et al. The genotype of early-transmitting HIV gp120s promotes alpha (4) beta(7)-reactivity, revealing alpha (4) beta(7) +/CD4+ T cells as key targets in mucosal transmission. PLoS Pathog 2010; 7:e1001301.
-
(2010)
PLoS Pathog
, vol.7
-
-
Nawaz, F.1
Cicala, C.2
Van Ryk, D.3
|