-
1
-
-
41949124934
-
Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing
-
DOI 10.1128/JVI.02660-07
-
Salazar-Gonzalez JF, Bailes E, Pham KT, et al. Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing. J Virol 2008; 82:3952-70. (Pubitemid 351521232)
-
(2008)
Journal of Virology
, vol.82
, Issue.8
, pp. 3952-3970
-
-
Salazar-Gonzalez, J.F.1
Bailes, E.2
Pham, K.T.3
Salazar, M.G.4
Guffey, M.B.5
Keele, B.F.6
Derdeyn, C.A.7
Farmer, P.8
Hunter, E.9
Allen, S.10
Manigart, O.11
Mulenga, J.12
Anderson, J.A.13
Swanstrom, R.14
Haynes, B.F.15
Athreya, G.S.16
Korber, B.T.M.17
Sharp, P.M.18
Shaw, G.M.19
Hahn, B.H.20
more..
-
2
-
-
77954051000
-
High multiplicity infection by HIV-1 in men who have sex with men
-
Li H, Bar KJ, Wang S, et al. High multiplicity infection by HIV-1 in men who have sex with men. PLoS Pathog 2010; 6:e1000890.
-
(2010)
PLoS Pathog
, vol.6
-
-
Li, H.1
Bar, K.J.2
Wang, S.3
-
3
-
-
1642369382
-
Identification of modifiable factors that affect the genetic diversity of the transmitted HIV-1 population
-
DOI 10.1097/00002030-200403050-00005
-
Sagar M, Lavreys L, Baeten JM, et al. Identification of modifiable factors that affect the genetic diversity of the transmitted HIV-1 population. AIDS 2004; 18:615-9. (Pubitemid 38393460)
-
(2004)
AIDS
, vol.18
, Issue.4
, pp. 615-619
-
-
Sagar, M.1
Lavreys, L.2
Baeten, J.M.3
Richardson, B.A.4
Mandaliya, K.5
Ndinya-Achola, J.O.6
Kreiss, J.K.7
Overbaugh, J.8
-
4
-
-
0033978489
-
Gender differences in HIV-1 diversity at time of infection
-
DOI 10.1038/71563
-
Long EM, Martin HL Jr., Kreiss JK, et al. Gender differences in HIV-1 diversity at time of infection. Nat Med 2000; 6:71-5. (Pubitemid 30048529)
-
(2000)
Nature Medicine
, vol.6
, Issue.1
, pp. 71-75
-
-
Long, E.M.1
Martin Jr., H.L.2
Kreiss, J.K.3
Rainwater, S.M.J.4
Lavreys, L.5
Jackson, D.J.6
Rakwar, J.7
Mandaliya, K.8
Overbaugh, J.9
-
5
-
-
77952678708
-
Wide variation in the multiplicity of HIV-1 infection among injection drug users
-
Bar KJ, Li H, Chamberland A, et al. Wide variation in the multiplicity of HIV-1 infection among injection drug users. J Virol 2010; 84: 6241-7.
-
(2010)
J Virol
, vol.84
, pp. 6241-7
-
-
Bar, K.J.1
Li, H.2
Chamberland, A.3
-
6
-
-
0027422278
-
Genotypic and phenotypic characterization of HIV-1 in patients with primary infection
-
Zhu T,Mo H,Wang N, et al. Genotypic and phenotypic characterization of HIV-1 patients with primary infection. Science 1993; 261:1179-81. (Pubitemid 23300886)
-
(1993)
Science
, vol.261
, Issue.5125
, pp. 1179-1181
-
-
Zhu, T.1
Mo, H.2
Wang, N.3
Nam, D.S.4
Cao, Y.5
Koup, R.A.6
Ho, D.D.7
-
7
-
-
0031575431
-
Change in coreceptor use correlates with disease progression in HIV-1- infected individuals
-
DOI 10.1084/jem.185.4.621
-
Connor RI, Sheridan KE, Ceradini D, Choe S, Landau NR. Change in coreceptor use correlates with disease progression in HIV-1-infected individuals. J Exp Med 1997; 185:621-8. (Pubitemid 27098147)
-
(1997)
Journal of Experimental Medicine
, vol.185
, Issue.4
, pp. 621-628
-
-
Connor, R.I.1
Sheridan, K.E.2
Ceradini, D.3
Choe, S.4
Landau, N.R.5
-
8
-
-
77957223314
-
CXCR4-using viruses in plasma and peripheral blood mononuclear cells during primary HIV-1 infection and impact on disease progression
-
Raymond S, Delobel P, Mavigner M, et al. CXCR4-using viruses in plasma and peripheral blood mononuclear cells during primary HIV-1 infection and impact on disease progression. AIDS 2010; 24:2305-12.
-
(2010)
AIDS
, vol.24
, pp. 2305-12
-
-
Raymond, S.1
Delobel, P.2
Mavigner, M.3
-
9
-
-
79952439156
-
Detection of quasispecies variants predicted to use CXCR4 by ultra-deep pyrosequencing during early HIV infection
-
Abbate I, Vlassi C, Rozera G, et al. Detection of quasispecies variants predicted to use CXCR4 by ultra-deep pyrosequencing during early HIV infection. AIDS 2011; 25:611-7.
-
(2011)
AIDS
, vol.25
, pp. 611-7
-
-
Abbate, I.1
Vlassi, C.2
Rozera, G.3
-
10
-
-
78651237643
-
HIV-1 envelope subregion length variation during disease progression
-
Curlin ME, Zioni R, Hawes SE, et al. HIV-1 envelope subregion length variation during disease progression. PLoS Pathog 2010; 6:e1001228.
-
(2010)
PLoS Pathog
, vol.6
-
-
Curlin, M.E.1
Zioni, R.2
Hawes, S.E.3
-
11
-
-
54849145400
-
Subgroup analyses of maraviroc in previously treated R5 HIV-1 infection
-
Fatkenheuer G, Nelson M, Lazzarin A, et al. Subgroup analyses of maraviroc in previously treated R5 HIV-1 infection. N Engl J Med 2008; 359:1442-55.
-
(2008)
N Engl J Med
, vol.359
, pp. 1442-55
-
-
Fatkenheuer, G.1
Nelson, M.2
Lazzarin, A.3
-
12
-
-
54849146700
-
Maraviroc for previously treated patients with R5 HIV-1 infection
-
Gulick RM, Lalezari J, Goodrich J, et al. Maraviroc for previously treated patients with R5 HIV-1 infection. N Engl J Med 2008; 359: 1429-41.
-
(2008)
N Engl J Med
, vol.359
, pp. 1429-41
-
-
Gulick, R.M.1
Lalezari, J.2
Goodrich, J.3
-
13
-
-
80051664545
-
Die akute HIV-1-infektion in Zürich: 2002-2004
-
DOI 10.1024/0369-8394.94.32.1199
-
Aceto L, Karrer U, Grube C, et al. [Primary HIV-1 infection in Zurich: 2002-2004]. Praxis (Bern 1994) 2005; 94:1199-205. (Pubitemid 41207523)
-
(2005)
Schweizerische Rundschau fur Medizin - Praxis
, vol.94
, Issue.32
, pp. 1199-1205
-
-
Aceto, L.1
Karrer, U.2
Grube, Ch.3
Oberholzer, R.4
Hasse, B.5
Presterl, E.6
Boni, J.7
Kuster, H.8
Trkola, A.9
Weber, R.10
Gunthard, H.F.11
-
14
-
-
77749306124
-
Efficient suppression of minority drug-resistant HIV type 1 (HIV-1) variants present at primary HIV-1 infection by ritonavir-boosted protease inhibitor-containing antiretroviral therapy
-
Metzner KJ, Rauch P, Von Wyl V, et al. Efficient suppression of minority drug-resistant HIV type 1 (HIV-1) variants present at primary HIV-1 infection by ritonavir-boosted protease inhibitor-containing antiretroviral therapy. J Infect Dis 2010; 201:1063-71.
-
(2010)
J Infect Dis
, vol.201
, pp. 1063-71
-
-
Metzner, K.J.1
Rauch, P.2
Von Wyl, V.3
-
15
-
-
77951879238
-
HIV-1 transmission after cessation of early antiretroviral therapy among men having sex with men
-
Rieder P, Joos B, Von Wyl V, et al. HIV-1 transmission after cessation of early antiretroviral therapy among men having sex with men. AIDS 2010; 24:1177-83.
-
(2010)
AIDS
, vol.24
, pp. 1177-83
-
-
Rieder, P.1
Joos, B.2
Von Wyl, V.3
-
16
-
-
33845288582
-
Complement lysis activity in autologous plasma is associated with lower viral loads during the acute phase of HIV-1 infection
-
Huber M, Fischer M, Misselwitz B, et al. Complement lysis activity in autologous plasma is associated with lower viral loads during the acute phase of HIV-1 infection. PLoS Med 2006; 3:e441.
-
(2006)
PLoS Med
, vol.3
-
-
Huber, M.1
Fischer, M.2
Misselwitz, B.3
-
17
-
-
78149441721
-
Profound depletion of HIV-1 transcription in patients initiating antiretroviral therapy during acute infection
-
Schmid A, Gianella S, Von Wyl V, et al. Profound depletion of HIV-1 transcription in patients initiating antiretroviral therapy during acute infection. PLoS One 2010; 5:e13310.
-
(2010)
PLoS One
, vol.5
-
-
Schmid, A.1
Gianella, S.2
Von Wyl, V.3
-
18
-
-
79959465186
-
Effect of early antiretroviral therapy during primary HIV-1 infection on cell-associated HIV-1 DNA and plasma HIV-1 RNA
-
Gianella S, vonWyl V, Fischer M, et al. Effect of early antiretroviral therapy during primary HIV-1 infection on cell-associated HIV-1 DNA and plasma HIV-1 RNA. Antivir Ther 2011; 16:535-45.
-
(2011)
Antivir Ther
, vol.16
, pp. 535-45
-
-
Gianella, S.1
Von Wyl, V.2
Fischer, M.3
-
19
-
-
0032928123
-
Highly sensitive methods for quantitation of human immunodeficiency virus type 1 RNA from plasma, cells, and tissues
-
Fischer M, Huber W, Kallivroussis A, et al. Highly sensitive methods for quantitation of human immunodeficiency virus type 1 RNA from plasma, cells, and tissues. J Clin Microbiol 1999; 37:1260-4. (Pubitemid 29187780)
-
(1999)
Journal of Clinical Microbiology
, vol.37
, Issue.5
, pp. 1260-1264
-
-
Fischer, M.1
Huber, W.2
Kallivroussis, A.3
Ott, P.4
Opravil, M.5
Luthy, R.6
Weber, R.7
Cone, R.W.8
-
20
-
-
21644487246
-
Low human immunodeficiency virus envelope diversity correlates with low in vitro replication capacity and predicts spontaneous control of plasma viremia after treatment interruptions
-
DOI 10.1128/JVI.79.14.9026-9037.2005
-
Joos B, Trkola A, Fischer M, et al. Low human immunodeficiency virus envelope diversity correlates with low in vitro replication capacity and predicts spontaneous control of plasma viremia after treatment interruptions. J Virol 2005; 79:9026-37. (Pubitemid 40934813)
-
(2005)
Journal of Virology
, vol.79
, Issue.14
, pp. 9026-9037
-
-
Joos, B.1
Trkola, A.2
Fischer, M.3
Kuster, H.4
Rusert, P.5
Leemann, C.6
Boni, J.7
Oxenius, A.8
Price, D.A.9
Phillips, R.E.10
Wong, J.K.11
Hirschel, B.12
Weber, R.13
Gunthard, H.F.14
-
21
-
-
36148931769
-
Predicting HIV coreceptor usage on the basis of genetic and clinical covariates
-
Sing T, Low AJ, Beerenwinkel N, et al. Predicting HIV coreceptor usage on the basis of genetic and clinical covariates. Antivir Ther 2007; 12: 1097-106. (Pubitemid 350114990)
-
(2007)
Antiviral Therapy
, vol.12
, Issue.7
, pp. 1097-1106
-
-
Sing, T.1
Low, A.J.2
Beerenwinkel, N.3
Sander, O.4
Cheung, P.K.5
Domingues, F.S.6
Buch, J.7
Daumer, M.8
Kaiser, R.9
Lengauer, T.10
Harrigan, P.R.11
-
22
-
-
0022404296
-
Infection of HTLV-III/LAV in HTLV-I-carrying cells MT-2 and MT-4 and application in a plaque assay
-
Harada S, Koyanagi Y, Yamamoto N. Infection of HTLV-III/LAV in HTLV-I-carrying cells MT-2 and MT-4 and application in a plaque assay. Science 1985; 229:563-6. (Pubitemid 16239336)
-
(1985)
Science
, vol.229
, Issue.4713
, pp. 563-566
-
-
Harada, S.1
Koyanagi, Y.2
Yamamoto, N.3
-
23
-
-
0344766077
-
Primary human immunodeficiency virus type 2 (HIV-2) isolates, like HIV- 1 isolates, frequently use CCR5 but show promiscuity in coreceptor usage
-
Morner A, Bjorndal A, Albert J, et al. Primary human immunodeficiency virus type 2 (HIV-2) isolates, like HIV-1 isolates, frequently use CCR5 but show promiscuity in coreceptor usage. J Virol 1999; 73:2343-9. (Pubitemid 29098139)
-
(1999)
Journal of Virology
, vol.73
, Issue.3
, pp. 2343-2349
-
-
Morner, A.1
Bjorndal, A.2
Albert, J.3
Kewalramani, V.N.4
Littman, D.R.5
Inoue, R.6
Thorstensson, R.7
Fenyo, E.M.8
Bjorling, E.9
-
24
-
-
0028136695
-
Standardized microtiter assay for determination of syncytium-inducing phenotypes of clinical human immunodeficiency virus type 1 isolates
-
Japour AJ, Fiscus SA, Arduino JM, Mayers DL, Reichelderfer PS, Kuritzkes DR. Standardized microtiter assay for determination of syncytium-inducing phenotypes of clinical human immunodeficiency virus type 1 isolates. J Clin Microbiol 1994; 32:2291-4. (Pubitemid 24258484)
-
(1994)
Journal of Clinical Microbiology
, vol.32
, Issue.9
, pp. 2291-2294
-
-
Japour, A.J.1
Fiscus, S.A.2
Arduino, J.-M.3
Mayers, D.L.4
Reichelderfer, P.S.5
Kuritzkes, D.R.6
-
25
-
-
0031936306
-
Neutralization sensitivity of human immunodeficiency virus type 1 primary isolates to antibodies and CD4-based reagents is independent of coreceptor usage
-
Trkola A, Ketas T, Kewalramani VN, et al. Neutralization sensitivity of human immunodeficiency virus type 1 primary isolates to antibodies and CD4-based reagents is independent of coreceptor usage. J Virol 1998; 72:1876-85. (Pubitemid 28100739)
-
(1998)
Journal of Virology
, vol.72
, Issue.3
, pp. 1876-1885
-
-
Trkola, A.1
Ketas, T.2
Kewalramani, V.N.3
Endorf, F.4
Binley, J.M.5
Katinger, H.6
Robinson, J.7
Littman, D.R.8
Moore, J.P.9
-
26
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
DOI 10.1093/bib/bbn013, Special Issue: Critical Technologies for Bioinformatics
-
Katoh K, Toh H. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 2008; 9:286-98. (Pubitemid 351890825)
-
(2008)
Briefings in Bioinformatics
, vol.9
, Issue.4
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
27
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 2002; 30:3059-66. (Pubitemid 34851225)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.14
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.-I.3
Miyata, T.4
-
28
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
DOI 10.1093/molbev/msm092
-
Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007; 24:1596-9. (Pubitemid 47236692)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.8
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
29
-
-
34548655652
-
Emergence of HIV-1 drug resistance in previously untreated patients initiating combination antiretroviral treatment: A comparison of different regimen types
-
DOI 10.1001/archinte.167.16.1782
-
Von Wyl V, Yerly S, Boni J, et al. Emergence of HIV-1 drug resistance in previously untreated patients initiating combination antiretroviral treatment: a comparison of different regimen types. Arch Intern Med 2007; 167:1782-90. (Pubitemid 47403067)
-
(2007)
Archives of Internal Medicine
, vol.167
, Issue.16
, pp. 1782-1790
-
-
Von Wyl, V.1
Yerly, S.2
Boni, J.3
Burgisser, P.4
Klimkait, T.5
Battegay, M.6
Furrer, H.7
Telenti, A.8
Hirschel, B.9
Vernazza, P.L.10
Bernasconi, E.11
Rickenbach, M.12
Perrin, L.13
Ledergerber, B.14
Gunthard, H.F.15
-
30
-
-
0041828179
-
Dynamics of HIV viremia and antibody seroconversion in plasma donors: Implications for diagnosis and staging of primary HIV infection
-
DOI 10.1097/00002030-200309050-00005
-
Fiebig EW, Wright DJ, Rawal BD, et al. Dynamics of HIV viremia and antibody seroconversion in plasma donors: implications for diagnosis and staging of primary HIV infection. AIDS 2003; 17:1871-9. (Pubitemid 37070272)
-
(2003)
AIDS
, vol.17
, Issue.13
, pp. 1871-1879
-
-
Fiebig, E.W.1
Wright, D.J.2
Rawal, B.D.3
Garrett, P.E.4
Schumacher, R.T.5
Peddada, L.6
Heldebrant, C.7
Smith, R.8
Conrad, A.9
Kleinman, S.H.10
Busch, M.P.11
-
31
-
-
59249096215
-
Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1
-
Haaland RE, Hawkins PA, Salazar-Gonzalez J, et al. Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1. PLoS Pathog 2009; 5: e1000274.
-
(2009)
PLoS Pathog
, vol.5
-
-
Haaland, R.E.1
Hawkins, P.A.2
Salazar-Gonzalez, J.3
-
32
-
-
2942665473
-
Human immunodeficiency virus type 1 (HIV-1) diversity at time of infection is not restricted to certain risk groups or specific HIV-1 subtypes
-
DOI 10.1128/JVI.78.13.7279-7283.2004
-
Sagar M, Kirkegaard E, Long EM, et al. Human immunodeficiency virus type 1 (HIV-1) diversity at time of infection is not restricted to certain risk groups or specific HIV-1 subtypes. J Virol 2004; 78: 7279-83. (Pubitemid 38781567)
-
(2004)
Journal of Virology
, vol.78
, Issue.13
, pp. 7279-7283
-
-
Sagar, M.1
Kirkegaard, E.2
Long, E.M.3
Celum, C.4
Buchbinder, S.5
Daar, E.S.6
Overbaugh, J.7
-
33
-
-
64049089430
-
Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants
-
Abrahams MR, Anderson JA, Giorgi EE, et al. Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants. J Virol 2009; 83:3556-67.
-
(2009)
J Virol
, vol.83
, pp. 3556-67
-
-
Abrahams, M.R.1
Anderson, J.A.2
Giorgi, E.E.3
-
34
-
-
21644472626
-
The replicative fitness of primary human immunodeficiency virus type 1 (HIV-1) group M, HIV-1 group O, and HIV-2 isolates
-
Arien KK, Abraha A, Quinones-Mateu ME, Kestens L, Vanham G, Arts EJ. The replicative fitness of primary human immunodeficiency virus type 1 (HIV-1) group M, HIV-1 group O, and HIV-2 isolates. J Virol 2005; 79:8979-0.
-
(2005)
J Virol
, vol.79
, pp. 8979-0
-
-
Arien, K.K.1
Abraha, A.2
Quinones-Mateu, M.E.3
Kestens, L.4
Vanham, G.5
Arts, E.J.6
-
35
-
-
0028783755
-
Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1
-
Poss M, Martin HL, Kreiss JK, et al. Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1. J Virol 1995; 69:8118-22.
-
(1995)
J Virol
, vol.69
, pp. 8118-22
-
-
Poss, M.1
Martin, H.L.2
Kreiss, J.K.3
-
36
-
-
33846623260
-
Development and characterization of a novel single-cycle recombinant-virus assay to determine human immunodeficiency virus type 1 coreceptor tropism
-
DOI 10.1128/AAC.00853-06
-
Whitcomb JM, Huang W, Fransen S, et al. Development and characterization of a novel single-cycle recombinant-virus assay to determine human immunodeficiency virus type 1 coreceptor tropism. Antimicrob Agents Chemother 2007; 51:566-75. (Pubitemid 46185274)
-
(2007)
Antimicrobial Agents and Chemotherapy
, vol.51
, Issue.2
, pp. 566-575
-
-
Whitcomb, J.M.1
Huang, W.2
Fransen, S.3
Limoli, K.4
Toma, J.5
Wrin, T.6
Chappey, C.7
Kiss, L.D.B.8
Paxinos, E.E.9
Petropoulos, C.J.10
-
37
-
-
0026533899
-
HIV-1 biological phenotype in longterm infected individuals evaluated with an MT-2 cocultivation assay
-
Koot M, Vos AH, Keet RP, et al. HIV-1 biological phenotype in longterm infected individuals evaluated with an MT-2 cocultivation assay. AIDS 1992; 6:49-54.
-
(1992)
AIDS
, vol.6
, pp. 49-54
-
-
Koot, M.1
Vos, A.H.2
Keet, R.P.3
-
38
-
-
67249147641
-
High frequency of X4/DM-tropic viruses in PBMC samples from patients with primary HIV-1 subtype-B infection in 1996-2007: The French ANRS CO06 PRIMO Cohort Study
-
Frange P, Galimand J, Goujard C, et al. High frequency of X4/DM-tropic viruses in PBMC samples from patients with primary HIV-1 subtype-B infection in 1996-2007: the French ANRS CO06 PRIMO Cohort Study. J Antimicrob Chemother 2009; 64:135-41.
-
(2009)
J Antimicrob Chemother
, vol.64
, pp. 135-41
-
-
Frange, P.1
Galimand, J.2
Goujard, C.3
-
39
-
-
77957804695
-
Low frequency of CXCR4-using viruses in patients at the time of primary non-subtype-B HIV-1 infection
-
Frange P, Chaix ML, Raymond S, et al. Low frequency of CXCR4-using viruses in patients at the time of primary non-subtype-B HIV-1 infection. J Clin Microbiol 2010; 48:3487-91.
-
(2010)
J Clin Microbiol
, vol.48
, pp. 3487-91
-
-
Frange, P.1
Chaix, M.L.2
Raymond, S.3
|