In silico cloning and annotation of genes involved in the digestion, detoxification and RNA interference mechanism in the midgut of Bactrocera dorsalis [Hendel (Diptera: Tephritidae)]

Insect Molecular Biology

Volumn 22, Issue 4, 2013, Pages 354-365

  Shen, G M ^a   Dou, W ^a   Huang, Y ^a   Jiang, X Z ^a   Smagghe, G ^b   Wang, J J ^a  

^a SOUTHWEST UNIVERSITY   (China)

^b GHENT UNIVERSITY   (Belgium)

Author keywords

Bactrocera dorsalis; detoxification; digestion; midgut; RNAi

Indexed keywords

CARBOXYLESTERASE; CYTOCHROME P450; GLUTATHIONE TRANSFERASE;

ANIMAL; ARTICLE; BACTROCERA DORSALIS; COMPUTER SIMULATION; DETOXIFICATION; DIGESTION; DRUG DETOXIFICATION; ENZYMOLOGY; FEMALE; GASTROINTESTINAL TRACT; GENE EXPRESSION PROFILING; GENETICS; INSECT CONTROL; INSECTICIDE RESISTANCE; METABOLISM; MIDGUT; MOLECULAR GENETICS; RNA INTERFERENCE; RNAI; TEPHRITIDAE;

BACTROCERA DORSALIS; DETOXIFICATION; DIGESTION; MIDGUT; RNAI;

ANIMALS; CARBOXYLESTERASE; COMPUTER SIMULATION; CYTOCHROME P-450 ENZYME SYSTEM; DIGESTION; FEMALE; GASTROINTESTINAL TRACT; GENE EXPRESSION PROFILING; GLUTATHIONE TRANSFERASE; INSECT CONTROL; INSECTICIDE RESISTANCE; METABOLIC DETOXICATION, DRUG; MOLECULAR SEQUENCE ANNOTATION; RNA INTERFERENCE; TEPHRITIDAE;

EID: 84879764650     PISSN: 09621075     EISSN: 13652583     Source Type: Journal    
DOI: 10.1111/imb.12026     Document Type: Article

References (44)

1. Ansorge, W.J., (2009) Next-generation DNA sequencing techniques. Nat Biotechnol 25: 195-203.
2. Boeckmann, B., Bairoch, A., Apweiler, R., Blatter, M.C., Estreicher, A., Gasteiger, E., et al. (2003) The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res 31: 365-370.
3. Brackney, D.E., Isoe, J., Black, W.C., IV, Zamora, J., Foy, B.D., Miesfeld, R.L., et al. (2010) Expression profiling and comparative analyses of seven midgut serine proteases from the yellow fever mosquito, Aedes aegypti. J Insect Physiol 56: 736-744.
4. Chen, S.L., Lu, K.H., Dai, S.M., Li, C.H., Shieh, C.J., and, Chang, C., (2011) Display female-specific double sex RNA interference in early generations of transformed oriental fruit fly, Bactrocera dorsalis (Hendel). Pest Manag Sci 67: 466-473.
5. Chen, S.L., Lin, C.P., and, Lu, K.H., (2012) cDNA isolation, expression, and hormonal regulation of yolk protein genes in the oriental fruit fly, Bactrocera dorsalis (Hendel) (Diptera: Tephritidae). J Insect Physiol 58: 763-770.
6. Chung, H., Sztal, T., Pasricha, S., Sridhar, M., Batterham, P., and, Daborn, P.J., (2009) Characterization of Drosophila melanogaster cytochrome P450 genes. Proc Natl Acad Sci 106: 5731-5736.
7. Clarke, A.R., Armstrong, K.F., Carmichael, A.E., Milne, J.R., Raghu, S., Roderick, G.K., et al. (2005) Invasive phytophagous pests arising through a recent tropical evolutionary radiation: the Bactrocera dorsalis complex of fruit flies. Annu Rev Entomol 50: 293-319.
8. Enayati, A., Ranson, H., and, Hemingway, J., (2005) Insect glutathione transferases and insecticide resistance. Insect Mol Biol 14: 3-8.
9. Grabherr, M.G., Haas, B.J., Yassour, M., Levin, J.Z., Thompson, D.A., Amit, I., et al. (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29: 644-652.
10. Hakim, R.S., Baldwin, K., and, Smagghe, G., (2010) Regulation of midgut growth, development, and metamorphosis. Ann Rev Entomol 55: 593-608.
11. Hammond, S.M., Boettcher, S., Caudy, A.A., Kobayashi, R., and, Hannon, G.J., (2001) Argonaute2, a link between genetic and biochemical analyses of RNAi. Science 293: 1146-1150.
12. Hsu, J., Haymer, D., Wu, W., and, Feng, H., (2006) Mutations in the acetylcholinesterase gene of Bactrocera dorsalis associated with resistance to organophosphorus insecticides. Insect Biochem Mol Biol 36: 396-402.
13. Hsu, J., Wu, W., Haymer, D., Liao, H., and, Feng, H., (2008) Alterations of the acetylcholinesterase enzyme in the oriental fruit fly Bactrocera dorsalis are correlated with resistance to the organophosphate insecticide fenitrothion. Insect Biochem Mol Biol 38: 146-154.
14. Hsu, J.C., Chien, T.Y., Hu, C.C., Chen, M.J.M., Wu, W.J., Feng, H.T., et al. (2012) Discovery of genes related to insecticide resistance in Bactrocera dorsalis by functional genomic analysis of a de novo assembled transcriptome. Plos One 7: e40950.
15. Huang, Y., Jiang, H.B., Shen, G.M., Dou, W., and, Wang, J.J., (2012) Molecular characterizations of two Cypochrome P450 genes encoding CYP6A41 and CYP6EK1 from the oriental fruit fly, Bactrocera dorsalis (Diptera: Tephritidae). Arch Insect Biochem Physiol 79: 31-46.
16. Hung, C.N., Lin, T.L., and, Lee, W.Y., (2000) Morphology and ultrastructure of the alimentary canal of the oriental fruit fly, Bactrocera dorsalis (Hendel) (Diptera: Tephritidae) (2): the structure of the midgut. Zool Stud 39: 387-394.
17. Huvenne, H., and, Smagghe, G., (2010) Mechanisms of dsRNA uptake in insects and potential of RNAi for pest control: a review. J Insect Physiol 56: 227-235.
18. Kanehisa, M., Araki, M., Goto, S., Hattori, M., Hirakawa, M., Itoh, M., et al. (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res 36: D480.
19. Karatolos, N., Pauchet, Y., Wilkinson, P., Chauhan, R., Denholm, I., Gorman, K., et al. (2011) Pyrosequencing the transcriptome of the greenhouse whitefly, Trialeurodes vaporariorum reveals multiple transcripts encoding insecticide targets and detoxifying enzymes. BMC Genomics 12: 1-14.
20. Lee, Y.S., Nakahara, K., Pham, J.W., Kim, K., He, Z., Sontheimer, E.J., et al. (2004) Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways. Cell 117: 69-82.
21. Li, H.M., Buczkowski, G., Mittapalli, O., Xie, J., Wu, J., Westerman, R., et al. (2008) Transcriptomic profiles of Drosophila melanogaster third instar larval midgut and responses to oxidative stress. Insect Mol Biol 17: 325-339.
22. Li, X., Zhang, M., and, Zhang, H., (2011) RNA Interference of four genes in adult Bactrocera dorsalis by feeding their dsRNAs. Plos One 6: e17788.
23. Liu, Q., Rand, T.A., Kalidas, S., Du, F., Kim, H.E., Smith, D.P., et al. (2003) R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway. Science 301: 1921-1925.
24. Matranga, C., Tomari, Y., Shin, C., Bartel, D.P., and, Zamore, P.D., (2005) Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes. Cell 123: 607-620.
25. Nelson, D.R., (2009) The cytochrome P450 homepage. Hum Genet 4: 59-65.
26. Shelly, T.E., Nishimoto, J.I., and, Edu, J., (2009) Influence of methoprene on the age-related mating propensity of males of the oriental fruit fly and the Mediterranean fruit fly (Diptera: Tephritidae). Fla Entomol 92: 193-198.
27. Shen, G.M., Dou, W., Niu, J.Z., Jiang, H.B., Yang, W.J., Jia, F.X., et al. (2011) Transcriptome analysis of the oriental fruit fly (Bactrocera dorsalis). Plos One 6: e29127.
28. Silva, L., Reis, A., Pereira, E., Oliveira, M., and, Guedes, R., (2010) Partial purification and characterization of trypsin-like proteinases from insecticide-resistant and-susceptible strains of the maize weevil, Sitophilus zeamais. Comp Biochem Physiol B 155: 12-19.
29. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and, Kumar, S., (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
30. Tatusov, R.L., Natale, D.A., Garkavtsev, I.V., Tatusova, T.A., Shankavaram, U.T., Rao, B.S., et al. (2001) The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 29: 22-28.
31. Terra, W.R., and, Ferreira, C., (1994) Insect digestive enzymes: properties, compartmentalization and function. Comp Biochem Physiol B 109: 1-62.
32. Tetreau, G., Bayyareddy, K., Jones, C.M., Stalinski, R., Riaz, M.A., Paris, M., et al. (2012) Larval midgut modifications associated with Bti resistance in the yellow fever mosquito using proteomic and transcriptomic approaches. BMC Genomics 13: 1-15.
33. Tomari, Y., Matranga, C., Haley, B., Martinez, N., and, Zamore, P.D., (2004) A protein sensor for siRNA asymmetry. Science 306: 1377-1380.
34. Ulvila, J., Parikka, M., Kleino, A., Sormunen, R., Ezekowitz, R.A., Kocks, C., et al. (2006) Double-stranded RNA is internalized by scavenger receptor-mediated endocytosis in Drosophila S2 cells. J Biol Chem 281: 14370-14375.
35. Vejares, S.G., Sabat, P., and, Sanchez-Hernandez, J.C., (2010) Tissue-specific inhibition and recovery of esterase activities in Lumbricus terrestris experimentally exposed to chlorpyrifos. Comp Biochem Physiol C Toxicol Pharmacol 151: 351-359.
36. Wan, X., Nardi, F., Zhang, B., and, Liu, Y., (2012) The oriental fruit fly, Bactrocera dorsalis, in China: origin and gradual inland range expansion associated with population growth. Plos One 6: e25238.
37. Wheeler, M.M., Tarver, M.R., Coy, M.R., and, Scharf, M.E., (2010) Characterization of four esterase genes and esterase activity from the gut of the termite Reticulitermes flavipes. Arch Insect Biochem Physiol 73: 30-48.
38. Wheelock, C.E., and, Nakagawa, Y., (2010) Carboxylesterases-from function to the field: an overview of carboxylesterase biochemistry, structure-activity relationship, and use in environmental field monitoring. J Pestic Sci 35: 215-217.
39. Willoughby, L., Chung, H., Lumb, C., Robin, C., Batterham, P., and, Daborn, P.J., (2006) A comparison of Drosophila melanogaster detoxification gene induction responses for six insecticides, caffeine and phenobarbital. Insect Biochem Mol Biol 36: 934-942.
40. Wolfson, J.L., and, Murdock, L.L., (1990) Diversity in digestive proteinase activity among insects. J Chem Ecol 16: 1089-1102.
41. Wu, S.W., Yang, Y.H., Yuan, G.R., Campbell, P.M., Teese, M.G., Russell, R.J., et al. (2011) Overexpressed esterases in a fenvalerate resistant strain of the cotton bollworm, Helicoverpa armigera. Insect Biochem Mol Biol 41: 14-21.
42. Ye, J., Fang, L., Zheng, H., Zhang, Y., Chen, J., Zhang, Z., et al. (2006) WEGO: a web tool for plotting GO annotations. Nucleic Acids Res 34: W293.
43. Yu, Q., Lu, C., Li, B., Fang, S., Zuo, W., Dai, F., et al. (2008) Identification, genomic organization and expression pattern of glutathione S-transferase in the silkworm, Bombyx mori. Insect Biochem Mol Biol 38: 1158-1164.
44. Zhou, W.W., Li, X.W., Quan, Y.H., Cheng, J., Zhang, C.X., Gurr, G., et al. (2011) Identification and expression profiles of nine glutathione S-transferase genes from the important rice phloem sap-sucker and virus vector Laodelphax striatellus (Fallen) (Hemiptera: Delphacidae). Pest Manag Sci 68: 1296-1305.