-
1
-
-
84988634463
-
Infectious diseases of humans: dynamics and control, volume 26
-
Anderson R, May R, (1992) Infectious diseases of humans: dynamics and control, volume 26. Wiley Online Library.
-
(1992)
Wiley Online Library
-
-
Anderson, R.1
May, R.2
-
4
-
-
0031036093
-
The role of sexual partnership networks in the epidemiology of gonorrhea
-
Ghani A, Swinton J, Garnett G, (1997) The role of sexual partnership networks in the epidemiology of gonorrhea. Sexually transmitted diseases 24: 45.
-
(1997)
Sexually Transmitted Diseases
, vol.24
, pp. 45
-
-
Ghani, A.1
Swinton, J.2
Garnett, G.3
-
5
-
-
84856555955
-
The dynamics of sexual contact networks: Effects on disease spread and control
-
Robinson K, Cohen T, Colijn C, (2012) The dynamics of sexual contact networks: Effects on disease spread and control. Theoretical Population Biology 81: 89-96.
-
(2012)
Theoretical Population Biology
, vol.81
, pp. 89-96
-
-
Robinson, K.1
Cohen, T.2
Colijn, C.3
-
6
-
-
41549103774
-
Social contacts and mixing patterns relevant to the spread of infectious diseases
-
Mossong J, Hens N, Jit M, Beutels P, Auranen K, et al. (2008) Social contacts and mixing patterns relevant to the spread of infectious diseases. PLoS medicine 5: e74.
-
(2008)
PLoS Medicine
, vol.5
-
-
Mossong, J.1
Hens, N.2
Jit, M.3
Beutels, P.4
Auranen, K.5
-
7
-
-
34547799052
-
Prevention strategies for sexually transmitted infections: importance of sexual network structure and epidemic phase
-
Ward H, (2007) Prevention strategies for sexually transmitted infections: importance of sexual network structure and epidemic phase. Sexually transmitted infections 83: i43-i49.
-
(2007)
Sexually Transmitted Infections
, vol.83
-
-
Ward, H.1
-
8
-
-
78650671288
-
A high-resolution human contact network for infectious disease transmission
-
Salathé M, Kazandjieva M, Lee J, Levis P, Feldman M, et al. (2010) A high-resolution human contact network for infectious disease transmission. Proceedings of the National Academy of Sciences 107: 22020-22025.
-
(2010)
Proceedings of the National Academy of Sciences
, vol.107
, pp. 22020-22025
-
-
Salathé, M.1
Kazandjieva, M.2
Lee, J.3
Levis, P.4
Feldman, M.5
-
10
-
-
0003992773
-
Respondent-driven sampling: a new approach to the study of hidden populations
-
Heckathorn D, (1997) Respondent-driven sampling: a new approach to the study of hidden populations. Social problems 44: 174-199.
-
(1997)
Social Problems
, vol.44
, pp. 174-199
-
-
Heckathorn, D.1
-
11
-
-
32144436311
-
Critical issues and further questions about respondent-driven sampling: comment on ramirez-valles
-
et al.(2005)
-
Heimer R, (2005) Critical issues and further questions about respondent-driven sampling: comment on ramirez-valles, et al.(2005). AIDS and Behavior 9: 403-408.
-
(2005)
AIDS and Behavior
, vol.9
, pp. 403-408
-
-
Heimer, R.1
-
13
-
-
14844297705
-
Identification of networks of sexually transmitted infection: a molecular, geographic, and social network analysis
-
Wylie J, Cabral T, Jolly A, (2005) Identification of networks of sexually transmitted infection: a molecular, geographic, and social network analysis. Journal of Infectious Diseases 191: 899.
-
(2005)
Journal of Infectious Diseases
, vol.191
, pp. 899
-
-
Wylie, J.1
Cabral, T.2
Jolly, A.3
-
14
-
-
0035657752
-
Sexual behaviour in britain: partnerships, practices, and hiv risk behaviours
-
Johnson A, Mercer C, Erens B, Copas A, McManus S, et al. (2001) Sexual behaviour in britain: partnerships, practices, and hiv risk behaviours. The Lancet 358: 1835-1842.
-
(2001)
The Lancet
, vol.358
, pp. 1835-1842
-
-
Johnson, A.1
Mercer, C.2
Erens, B.3
Copas, A.4
McManus, S.5
-
15
-
-
33748575553
-
Mixing patterns and the spread of closecontact infectious diseases
-
Edmunds W, Kafatos G, Wallinga J, Mossong J, (2006) Mixing patterns and the spread of closecontact infectious diseases. Emerging themes in epidemiology 3: 10.
-
(2006)
Emerging Themes in Epidemiology
, vol.3
, pp. 10
-
-
Edmunds, W.1
Kafatos, G.2
Wallinga, J.3
Mossong, J.4
-
16
-
-
84965587822
-
Snowball sampling: Problems and techniques of chain referral sampling
-
Biernacki P, Waldorf D, (1981) Snowball sampling: Problems and techniques of chain referral sampling. Sociological Methods & Research 10: 141-163.
-
(1981)
Sociological Methods & Research
, vol.10
, pp. 141-163
-
-
Biernacki, P.1
Waldorf, D.2
-
17
-
-
4043109116
-
Sexual network analysis of a gonorrhoea outbreak
-
De P, Singh A, Wong T, Yacoub W, Jolly A, (2004) Sexual network analysis of a gonorrhoea outbreak. Sexually transmitted infections 80: 280-285.
-
(2004)
Sexually Transmitted Infections
, vol.80
, pp. 280-285
-
-
De, P.1
Singh, A.2
Wong, T.3
Yacoub, W.4
Jolly, A.5
-
19
-
-
0346373759
-
Unifying the epidemiological and evolutionary dynamics of pathogens
-
Grenfell B, Pybus O, Gog J, Wood J, Daly J, et al. (2004) Unifying the epidemiological and evolutionary dynamics of pathogens. Science 303: 327-332.
-
(2004)
Science
, vol.303
, pp. 327-332
-
-
Grenfell, B.1
Pybus, O.2
Gog, J.3
Wood, J.4
Daly, J.5
-
20
-
-
77954335360
-
Protocols for sampling viral sequences to study epidemic dynamics
-
Stack J, Welch J, Ferrari M, Shapiro B, Grenfell B, (2010) Protocols for sampling viral sequences to study epidemic dynamics. Journal of The Royal Society Interface 7: 1119-1127.
-
(2010)
Journal of The Royal Society Interface
, vol.7
, pp. 1119-1127
-
-
Stack, J.1
Welch, J.2
Ferrari, M.3
Shapiro, B.4
Grenfell, B.5
-
21
-
-
67651100815
-
Evolutionary analysis of the dynamics of viral infectious disease
-
Pybus O, Rambaut A, (2009) Evolutionary analysis of the dynamics of viral infectious disease. Nature Reviews Genetics 10: 540-550.
-
(2009)
Nature Reviews Genetics
, vol.10
, pp. 540-550
-
-
Pybus, O.1
Rambaut, A.2
-
22
-
-
77956184144
-
Unlocking pathogen genotyping information for public health by mathematical modeling
-
Kretzschmar M, Gomes G, Coutinho R, Koopman J, et al. (2010) Unlocking pathogen genotyping information for public health by mathematical modeling. Trends in microbiology 18: 406-412.
-
(2010)
Trends in Microbiology
, vol.18
, pp. 406-412
-
-
Kretzschmar, M.1
Gomes, G.2
Coutinho, R.3
Koopman, J.4
-
23
-
-
79251556815
-
Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees
-
doi: 10.1155/2011/238743
-
O'Dea E, Wilke C, (2010) Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees. Interdisciplinary perspectives on infectious diseases 2011doi 10.1155/2011/238743.
-
(2010)
Interdisciplinary Perspectives on Infectious Diseases
, vol.2011
-
-
O'Dea, E.1
Wilke, C.2
-
24
-
-
84861162090
-
Inferring epidemic contact structure from phylogenetic trees
-
Leventhal G, Kouyos R, Stadler T, von Wyl V, Yerly S, et al. (2012) Inferring epidemic contact structure from phylogenetic trees. PLoS Computational Biology 8: e1002413.
-
(2012)
PLoS Computational Biology
, vol.8
-
-
Leventhal, G.1
Kouyos, R.2
Stadler, T.3
von Wyl, V.4
Yerly, S.5
-
25
-
-
79960144184
-
Inferring epidemiological parameters on the basis of allele frequencies
-
Stadler T, (2011) Inferring epidemiological parameters on the basis of allele frequencies. Genetics 188: 663-672.
-
(2011)
Genetics
, vol.188
, pp. 663-672
-
-
Stadler, T.1
-
26
-
-
84855467207
-
Complex population dynamics and the coalescent under neutrality
-
Volz E, (2012) Complex population dynamics and the coalescent under neutrality. Genetics 190: 187-201.
-
(2012)
Genetics
, vol.190
, pp. 187-201
-
-
Volz, E.1
-
27
-
-
84864075429
-
Simple epidemiological dynamics explain phylogenetic clustering of hiv from patients with recent infection
-
Volz E, Koopman J, Ward M, Brown A, Frost S, (2012) Simple epidemiological dynamics explain phylogenetic clustering of hiv from patients with recent infection. PLoS Computational Biology 8: e1002552.
-
(2012)
PLoS Computational Biology
, vol.8
-
-
Volz, E.1
Koopman, J.2
Ward, M.3
Brown, A.4
Frost, S.5
-
28
-
-
75649084906
-
Evolution of mrsa during hospital transmission and intercontinental spread
-
Harris S, Feil E, Holden M, Quail M, Nickerson E, et al. (2010) Evolution of mrsa during hospital transmission and intercontinental spread. Science 327: 469.
-
(2010)
Science
, vol.327
, pp. 469
-
-
Harris, S.1
Feil, E.2
Holden, M.3
Quail, M.4
Nickerson, E.5
-
29
-
-
79951995822
-
Whole-genome sequencing and socialnetwork analysis of a tuberculosis outbreak
-
Gardy J, Johnston J, Sui S, Cook V, Shah L, et al. (2011) Whole-genome sequencing and socialnetwork analysis of a tuberculosis outbreak. New England Journal of Medicine 364: 730-739.
-
(2011)
New England Journal of Medicine
, vol.364
, pp. 730-739
-
-
Gardy, J.1
Johnston, J.2
Sui, S.3
Cook, V.4
Shah, L.5
-
30
-
-
84872594707
-
Investigation of disease outbreaks with genome sequencing
-
Gardy JL, (2013) Investigation of disease outbreaks with genome sequencing. The Lancet infectious diseases 13: 101-102.
-
(2013)
The Lancet Infectious Diseases
, vol.13
, pp. 101-102
-
-
Gardy, J.L.1
-
31
-
-
84873034794
-
Rapid whole-genome sequencing for investigation of a suspected tuberculosis outbreak
-
Török ME, Reuter S, Bryant J, Köser CU, Stinchcombe SV, et al. (2013) Rapid whole-genome sequencing for investigation of a suspected tuberculosis outbreak. Journal of clinical microbiology 51: 611-614.
-
(2013)
Journal of Clinical Microbiology
, vol.51
, pp. 611-614
-
-
Török, M.E.1
Reuter, S.2
Bryant, J.3
Köser, C.U.4
Stinchcombe, S.V.5
-
32
-
-
84857411659
-
Genomic epidemiology of the escherichia coli o104: H4 outbreaks in europe, 2011
-
Grad YH, Lipsitch M, Feldgarden M, Arachchi HM, Cerqueira GC, et al. (2012) Genomic epidemiology of the escherichia coli o104: H4 outbreaks in europe, 2011. Proceedings of the National Academy of Sciences 109: 3065-3070.
-
(2012)
Proceedings of the National Academy of Sciences
, vol.109
, pp. 3065-3070
-
-
Grad, Y.H.1
Lipsitch, M.2
Feldgarden, M.3
Arachchi, H.M.4
Cerqueira, G.C.5
-
33
-
-
84872513471
-
Whole-genome sequencing to delineate mycobacterium tuberculosis outbreaks: a retrospective observational study
-
Walker TM, Ip CL, Harrell RH, Evans JT, Kapatai G, et al. (2012) Whole-genome sequencing to delineate mycobacterium tuberculosis outbreaks: a retrospective observational study. The Lancet infectious diseases 13: 137-146.
-
(2012)
The Lancet Infectious Diseases
, vol.13
, pp. 137-146
-
-
Walker, T.M.1
Ip, C.L.2
Harrell, R.H.3
Evans, J.T.4
Kapatai, G.5
-
39
-
-
17744381574
-
Bayesian coalescent inference of past population dynamics from molecular sequences
-
Drummond A, Rambaut A, Shapiro B, Pybus O, (2005) Bayesian coalescent inference of past population dynamics from molecular sequences. Molecular Biology and Evolution 22: 1185-1192.
-
(2005)
Molecular Biology and Evolution
, vol.22
, pp. 1185-1192
-
-
Drummond, A.1
Rambaut, A.2
Shapiro, B.3
Pybus, O.4
-
40
-
-
61549091172
-
Extensions of the coalescent effective population size
-
Wakeley J, Sargsyan O, (2009) Extensions of the coalescent effective population size. Genetics 181: 341-345.
-
(2009)
Genetics
, vol.181
, pp. 341-345
-
-
Wakeley, J.1
Sargsyan, O.2
-
41
-
-
84858420452
-
Estimating the basic reproductive number from viral sequence data
-
Stadler T, Kouyos R, Von Wyl V, Yerly S, Böni J, et al. (2012) Estimating the basic reproductive number from viral sequence data. Molecular Biology and Evolution 29: 347-357.
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 347-357
-
-
Stadler, T.1
Kouyos, R.2
Von Wyl, V.3
Yerly, S.4
Böni, J.5
-
43
-
-
0036773016
-
Genie: estimating demographic history from molecular phylogenies
-
Pybus O, Rambaut A, (2002) Genie: estimating demographic history from molecular phylogenies. Bioinformatics 18: 1404-1405.
-
(2002)
Bioinformatics
, vol.18
, pp. 1404-1405
-
-
Pybus, O.1
Rambaut, A.2
-
44
-
-
0033911330
-
An integrated framework for the inference of viral population history from reconstructed genealogies
-
Pybus O, Rambaut A, Harvey P, (2000) An integrated framework for the inference of viral population history from reconstructed genealogies. Genetics 155: 1429-1437.
-
(2000)
Genetics
, vol.155
, pp. 1429-1437
-
-
Pybus, O.1
Rambaut, A.2
Harvey, P.3
-
45
-
-
0035927795
-
The web of human sexual contacts
-
Fredrik L, Christofer R, Luis A, et al. (2001) The web of human sexual contacts. Nature 411: 907-908.
-
(2001)
Nature
, vol.411
, pp. 907-908
-
-
Fredrik, L.1
Christofer, R.2
Luis, A.3
-
46
-
-
0036107883
-
Gonorrhoea and chlamydia core groups and sexual networks in manitoba
-
Jolly A, Wylie J, (2002) Gonorrhoea and chlamydia core groups and sexual networks in manitoba. Sexually transmitted infections 78: i145-i151.
-
(2002)
Sexually Transmitted Infections
, vol.78
-
-
Jolly, A.1
Wylie, J.2
-
47
-
-
77956596198
-
A two-tiered model for simulating the ecological and evolutionary dynamics of rapidly evolving viruses, with an application to inuenza
-
Koelle K, Khatri P, Kamradt M, Kepler T, (2010) A two-tiered model for simulating the ecological and evolutionary dynamics of rapidly evolving viruses, with an application to inuenza. Journal of The Royal Society Interface 7: 1257-1274.
-
(2010)
Journal of The Royal Society Interface
, vol.7
, pp. 1257-1274
-
-
Koelle, K.1
Khatri, P.2
Kamradt, M.3
Kepler, T.4
-
48
-
-
0030484686
-
Patterns in Phylogenetic Tree Balance with Variable and Evolving Speciation Rates
-
Heard SB, (1996) Patterns in Phylogenetic Tree Balance with Variable and Evolving Speciation Rates. Evolution 50: 2141-2148.
-
(1996)
Evolution
, vol.50
, pp. 2141-2148
-
-
Heard, S.B.1
-
50
-
-
0036963179
-
Power of eight tree shape statistics to detect nonrandom diversifi-cation: a comparison by simulation of two models of cladogenesis
-
Agapow PMM, Purvis A, (2002) Power of eight tree shape statistics to detect nonrandom diversifi-cation: a comparison by simulation of two models of cladogenesis. Systematic biology 51: 866-872.
-
(2002)
Systematic Biology
, vol.51
, pp. 866-872
-
-
Agapow, P.M.M.1
Purvis, A.2
-
51
-
-
0001416546
-
Patterns in Tree Balance among Cladistic, Phenetic, and Randomly Generated Phylogenetic Trees
-
Heard SB, (1992) Patterns in Tree Balance among Cladistic, Phenetic, and Randomly Generated Phylogenetic Trees. Evolution 46: 1818-1826.
-
(1992)
Evolution
, vol.46
, pp. 1818-1826
-
-
Heard, S.B.1
-
53
-
-
70349655085
-
Molecular phylodynamics of the heterosexual hiv epidemic in the united kingdom
-
Hughes G, Fearnhill E, Dunn D, Lycett S, Rambaut A, et al. (2009) Molecular phylodynamics of the heterosexual hiv epidemic in the united kingdom. PLoS pathogens 5: e1000590.
-
(2009)
PLoS Pathogens
, vol.5
-
-
Hughes, G.1
Fearnhill, E.2
Dunn, D.3
Lycett, S.4
Rambaut, A.5
-
54
-
-
41549160713
-
Episodic sexual transmission of hiv revealed by molecular phylodynamics
-
Lewis F, Hughes G, Rambaut A, Pozniak A, Brown A, (2008) Episodic sexual transmission of hiv revealed by molecular phylodynamics. PLoS medicine 5: e50.
-
(2008)
PLoS Medicine
, vol.5
-
-
Lewis, F.1
Hughes, G.2
Rambaut, A.3
Pozniak, A.4
Brown, A.5
-
55
-
-
80052409994
-
Transmission clustering drives the onward spread of the hiv epidemic among men who have sex with men in quebec
-
Brenner B, Roger M, Stephens D, Moisi D, Hardy I, et al. (2011) Transmission clustering drives the onward spread of the hiv epidemic among men who have sex with men in quebec. Journal of Infectious Diseases 204: 1115-1119.
-
(2011)
Journal of Infectious Diseases
, vol.204
, pp. 1115-1119
-
-
Brenner, B.1
Roger, M.2
Stephens, D.3
Moisi, D.4
Hardy, I.5
-
56
-
-
80053427855
-
Transmission network parameters estimated from hiv sequences for a nationwide epidemic
-
Brown A, Lycett S, Weinert L, Hughes G, Fearnhill E, et al. (2011) Transmission network parameters estimated from hiv sequences for a nationwide epidemic. Journal of Infectious Diseases 204: 1463-1469.
-
(2011)
Journal of Infectious Diseases
, vol.204
, pp. 1463-1469
-
-
Brown, A.1
Lycett, S.2
Weinert, L.3
Hughes, G.4
Fearnhill, E.5
-
57
-
-
78751650360
-
Reconstructing disease outbreaks from genetic data: a graph approach
-
Jombart T, Eggo R, Dodd P, Balloux F, (2010) Reconstructing disease outbreaks from genetic data: a graph approach. Heredity 106: 383-390.
-
(2010)
Heredity
, vol.106
, pp. 383-390
-
-
Jombart, T.1
Eggo, R.2
Dodd, P.3
Balloux, F.4
-
58
-
-
50949118004
-
Hiv-1 transmission, by stage of infection
-
Hollingsworth T, Anderson R, Fraser C, (2008) Hiv-1 transmission, by stage of infection. Journal of Infectious Diseases 198: 687-693.
-
(2008)
Journal of Infectious Diseases
, vol.198
, pp. 687-693
-
-
Hollingsworth, T.1
Anderson, R.2
Fraser, C.3
-
60
-
-
0018355108
-
Fifteen-month followup study of women infected with chlamydia trachomatis
-
McCormack W, Alpert S, McComb D, Nichols R, Semine D, et al. (1979) Fifteen-month followup study of women infected with chlamydia trachomatis. New England Journal of Medicine 300: 123-125.
-
(1979)
New England Journal of Medicine
, vol.300
, pp. 123-125
-
-
McCormack, W.1
Alpert, S.2
McComb, D.3
Nichols, R.4
Semine, D.5
-
61
-
-
84055176877
-
Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data
-
Ypma R, Bataille A, Stegeman A, Koch G, Wallinga J, et al. (2012) Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data. Proceedings of the Royal Society B: Biological Sciences 279: 444-450.
-
(2012)
Proceedings of the Royal Society B: Biological Sciences
, vol.279
, pp. 444-450
-
-
Ypma, R.1
Bataille, A.2
Stegeman, A.3
Koch, G.4
Wallinga, J.5
-
62
-
-
77951882045
-
Molecular epidemiology reveals longterm changes in hiv type 1 subtype b transmission in switzerland
-
Kouyos R, Von Wyl V, Yerly S, Böni J, Taffé P, et al. (2010) Molecular epidemiology reveals longterm changes in hiv type 1 subtype b transmission in switzerland. Journal of Infectious Diseases 201: 1488-1497.
-
(2010)
Journal of Infectious Diseases
, vol.201
, pp. 1488-1497
-
-
Kouyos, R.1
Von Wyl, V.2
Yerly, S.3
Böni, J.4
Taffé, P.5
-
63
-
-
65249116434
-
Evidence of a large, international network of hcv transmission in hiv-positive men who have sex with men
-
van de Laar T, Pybus O, Bruisten S, Brown D, Nelson M, et al. (2009) Evidence of a large, international network of hcv transmission in hiv-positive men who have sex with men. Gastroenterology 136: 1609-1617.
-
(2009)
Gastroenterology
, vol.136
, pp. 1609-1617
-
-
van de Laar, T.1
Pybus, O.2
Bruisten, S.3
Brown, D.4
Nelson, M.5
-
64
-
-
67650960661
-
Phylodynamic analysis of the dissemination of hiv-1 crf01 ae in vietnam
-
Liao H, Tee K, Hase S, Uenishi R, Li X, et al. (2009) Phylodynamic analysis of the dissemination of hiv-1 crf01 ae in vietnam. Virology 391: 51-56.
-
(2009)
Virology
, vol.391
, pp. 51-56
-
-
Liao, H.1
Tee, K.2
Hase, S.3
Uenishi, R.4
Li, X.5
|