-
1
-
-
0022357743
-
Social networks and the spread of infectious diseases: The AIDS example
-
DOI 10.1016/0277-9536(85)90269-2
-
Klovdahl AS. Social networks and the spread of infectious diseases: the AIDS example. Soc Sci Med 1985; 21:1203-16. (Pubitemid 16175376)
-
(1985)
Social Science and Medicine
, vol.21
, Issue.11
, pp. 1203-1216
-
-
Klovdahl, A.S.1
-
2
-
-
0032510178
-
Molecular epidemiological analysis of HIV in sexual networks in Uganda
-
DOI 10.1097/00002030-199803000-00006
-
Yirrell DL, Pickering H, Palmerini G, et al. Molecular epidemiological analysis of HIV in sexual networks in Uganda. AIDS 1998; 12:285-90. (Pubitemid 28045457)
-
(1998)
AIDS
, vol.12
, Issue.3
, pp. 285-290
-
-
Yirrell, D.L.1
Pickering, H.2
Palmarini, G.3
Hamilton, L.4
Rutemberwa, A.5
Biryahwaho, B.6
Whitworth, J.7
Leigh Brown, A.J.8
-
3
-
-
34247229031
-
Limitations to contact tracing and phylogenetic analysis in establishing HIV type 1 transmission networks in Cuba
-
DOI 10.1089/aid.2006.0158
-
Resik S, Lemey P, Ping LH, et al. Limitations to contact tracing and phylogenetic analysis in establishing HIV type 1 transmission networks in Cuba. AIDS Res Hum Retroviruses 2007; 23:347-56. (Pubitemid 46608554)
-
(2007)
AIDS Research and Human Retroviruses
, vol.23
, Issue.3
, pp. 347-356
-
-
Resik, S.1
Lemey, P.2
Ping, L.-H.3
Kouri, V.4
Joanes, J.5
Perez, J.6
Vandamme, A.-M.7
Swanstrom, R.8
-
4
-
-
20244368227
-
Rates of HIV-1 transmission per coital act, by stage of HIV-1 infection, in Rakai, Uganda
-
DOI 10.1086/429411
-
Wawer MJ, Gray RH, Sewankambo NK, et al. Rates of HIV-1 transmission per coital act, by stage of HIV-1 infection, in Rakai, Uganda. J Infect Dis 2005; 191:1403-9. (Pubitemid 40563350)
-
(2005)
Journal of Infectious Diseases
, vol.191
, Issue.9
, pp. 1403-1409
-
-
Wawer, M.J.1
Gray, R.H.2
Sewankambo, N.K.3
Serwadda, D.4
Li, X.5
Laeyendecker, O.6
Kiwanuka, N.7
Kigozi, G.8
Kiddugavu, M.9
Lutalo, T.10
Nalugoda, F.11
Wabwire-Mangen, F.12
Meehan, M.P.13
Quinn, T.C.14
-
5
-
-
0035927795
-
The web of human sexual contacts
-
Liljeros F, Edling CR, Amaral LA, Stanley HE, Aberg Y. The web of human sexual contacts. Nature 2001; 411:907-8.
-
(2001)
Nature
, vol.411
, pp. 907-908
-
-
Liljeros, F.1
Edling, C.R.2
Amaral, L.A.3
Stanley, H.E.4
Aberg, Y.5
-
6
-
-
39649103223
-
Degree distributions in sexual networks: A framework for evaluating evidence
-
DOI 10.1097/OLQ.0b013e3181453a84
-
Hamilton DT, Handcock MS, Morris M. Degree distributions in sexual networks: a framework for evaluating evidence. Sex Transm Dis 2008; 35:30-40. (Pubitemid 351619355)
-
(2008)
Sexually Transmitted Diseases
, vol.35
, Issue.1
, pp. 30-40
-
-
Hamilton, D.T.1
Handcock, M.S.2
Morris, M.3
-
7
-
-
17344391186
-
The molecular epidemiology of human immunodeficiency virus type 1 in six cities in Britain and Ireland
-
DOI 10.1006/viro.1997.8656
-
Leigh Brown AJ, Lobidel D, Wade CM, et al. The molecular epidemiology of human immunodeficiency virus type 1 in six cities in Britain and Ireland. Virology 1997; 235:166-77. (Pubitemid 27380817)
-
(1997)
Virology
, vol.235
, Issue.1
, pp. 166-177
-
-
Brown, A.J.L.1
Lobidel, D.2
Wade, C.M.3
Rebus, S.4
Phillips, A.N.5
Brettle, R.P.6
France, A.J.7
Leen, C.S.8
McMenamin, J.9
McMillan, A.10
Maw, R.D.11
Mulcahy, F.12
Robertson, J.R.13
Sankar, K.N.14
Scott, G.15
Wyld, R.16
Peutherer, J.F.17
-
8
-
-
57349137641
-
Transmission networks of drug resistance acquired in primary/early stage HIV infection
-
Brenner BG, Roger M, Moisi DD, et al. Transmission networks of drug resistance acquired in primary/early stage HIV infection. AIDS 2008; 22:2509-15.
-
(2008)
AIDS
, vol.22
, pp. 2509-2515
-
-
Brenner, B.G.1
Roger, M.2
Moisi, D.D.3
-
9
-
-
68449091365
-
The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection
-
Yerly S, Junier T, Gayet-Ageron A, et al. The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection. AIDS 2009; 23:1415-23.
-
(2009)
AIDS
, vol.23
, pp. 1415-1423
-
-
Yerly, S.1
Junier, T.2
Gayet-Ageron, A.3
-
10
-
-
77951882045
-
Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland
-
Kouyos RD, von Wyl V, Yerly S, et al. Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland. J Infect Dis 2010; 201:1488-97.
-
(2010)
J Infect Dis
, vol.201
, pp. 1488-1497
-
-
Kouyos, R.D.1
Von Wyl, V.2
Yerly, S.3
-
12
-
-
41549160713
-
Episodic sexual transmission of HIV revealed by molecular phylodynamics
-
Lewis F, Hughes GJ, Rambaut A, Pozniak A, Leigh Brown AJ. Episodic sexual transmission of HIV revealed by molecular phylodynamics. PLoS Med 2008; 5:e50.
-
(2008)
PLoS Med
, vol.5
-
-
Lewis, F.1
Hughes, G.J.2
Rambaut, A.3
Pozniak, A.4
Leigh Brown, A.J.5
-
13
-
-
70349655085
-
Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom
-
Hughes GJ, Fearnhill E, Dunn D, Lycett SJ, Rambaut A, Leigh Brown AJ. Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom. PLoS Pathog 2009; 5:e1000590.
-
(2009)
PLoS Pathog
, vol.5
-
-
Hughes, G.J.1
Fearnhill, E.2
Dunn, D.3
Lycett, S.J.4
Rambaut, A.5
Leigh Brown, A.J.6
-
14
-
-
0142248431
-
British HIV Association (BHIVA) guidelines for the treatment of HIV-infected adults with antiretroviral therapy
-
BHIVA Writing Committee on behalf of the BHIVA Executive Committee
-
BHIVA Writing Committee on behalf of the BHIVA Executive Committee. British HIV Association (BHIVA) guidelines for the treatment of HIV-infected adults with antiretroviral therapy. HIV Med 2003; 4(suppl 1):1-41.
-
(2003)
HIV Med
, vol.4
, Issue.SUPPL. 1
, pp. 1-41
-
-
-
15
-
-
84857103464
-
-
Health Protection Agency Accessed 28 April 2010
-
Health Protection Agency. New HIV diagnoses in the UK. 2007. http://www.hpa.org.uk/web/HPAweb&HPAwebStandard/HPAweb-C/1203084373037. Accessed 28 April 2010.
-
(2007)
New HIV Diagnoses in the UK
-
-
-
16
-
-
27544496497
-
An automated genotyping system for analysis of HIV-1 and other microbial sequences
-
DOI 10.1093/bioinformatics/bti607
-
De Oliveira T, Deforche K, Cassol S, et al. An automated genotyping system for analysis of HIV-1 and other microbial sequences. Bioinformatics 2005; 21:3797-800. (Pubitemid 41535530)
-
(2005)
Bioinformatics
, vol.21
, Issue.19
, pp. 3797-3800
-
-
De Oliveira, T.1
Deforche, K.2
Cassol, S.3
Salminen, M.4
Paraskevis, D.5
Seebregts, C.6
Snoeck, J.7
Van Rensburg, E.J.8
Wensing, A.M.J.9
Van De Vijver, D.A.10
Boucher, C.A.11
Camacho, R.12
Vandamme, A.-M.13
-
17
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
DOI 10.1007/BF02101694
-
Hasegawa M, Kishino H, Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 1985; 22:160-74. (Pubitemid 16227864)
-
(1985)
Journal of Molecular Evolution
, vol.22
, Issue.2
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
19
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406-25.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
21
-
-
1042304216
-
APE: Analyses of phylogenetics and evolution in R language
-
DOI 10.1093/bioinformatics/btg412
-
Paradis E, Claude J, Strimmer K. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 2004; 20:289-90. (Pubitemid 38195693)
-
(2004)
Bioinformatics
, vol.20
, Issue.2
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
22
-
-
54049091266
-
-
Accessed 26 August 2011
-
Handcock MS, Hunter DR, Butts CT, Goodreau SM, Krivitsky PN, Morris M. Statnet: software tools for the statistical modeling of network data. 2003. http://statnetproject.org. Accessed 26 August 2011.
-
(2003)
Statnet: Software Tools for the Statistical Modeling of Network Data
-
-
Handcock, M.S.1
Hunter, D.R.2
Butts, C.T.3
Goodreau, S.M.4
Krivitsky, P.N.5
Morris, M.6
-
23
-
-
2442551914
-
Likelihood-based inference for stochastic models of sexual network formation
-
DOI 10.1016/j.tpb.2003.09.006, PII S0040580904000310
-
Handcock MS, Jones JH. Likelihood-based inference for stochastic models of sexual network formation. Theor Popul Biol 2004; 65:413-22. (Pubitemid 38611009)
-
(2004)
Theoretical Population Biology
, vol.65
, Issue.4
, pp. 413-422
-
-
Handcock, M.S.1
Jones, J.H.2
-
24
-
-
0002114070
-
The place of mathematics in medical and biological statistics
-
Irwin JO. The place of mathematics in medical and biological statistics. J Roy Stat Soc A 1963; 126:1-45.
-
(1963)
J Roy Stat Soc A
, vol.126
, pp. 1-45
-
-
Irwin, J.O.1
-
26
-
-
3142720267
-
Increasing prevalence of male homosexual partnerships and practices in Britain 1990-2000: Evidence from national probability surveys
-
DOI 10.1097/01.aids.0000131331.36386.de
-
Mercer CH, Fenton KA, Copas AJ, et al. Increasing prevalence of male homosexual partnerships and practices in Britain 1990-2000: evidence from national probability surveys. AIDS 2004; 18:1453-8. (Pubitemid 38925138)
-
(2004)
AIDS
, vol.18
, Issue.10
, pp. 1453-1458
-
-
Mercer, C.H.1
Fenton, K.A.2
Copas, A.J.3
Wellings, K.4
Erens, B.5
McManus, S.6
Nanchahal, K.7
Macdowall, W.8
Johnson, A.M.9
-
27
-
-
0034600553
-
Increase in high risk sexual behaviour among homosexual men, London 1996-8: Cross sectional, questionnaire study
-
Dodds JP, Nardone A, Mercey DE, Johnson AM. Increase in high risk sexual behaviour among homosexual men, London 1996-8: cross sectional, questionnaire study. BMJ 2000; 320:1510-1. (Pubitemid 30330305)
-
(2000)
British Medical Journal
, vol.320
, Issue.7248
, pp. 1510-1511
-
-
Dodds, J.P.1
Nardone, A.2
Mercey, D.E.3
Johnson, A.M.4
-
28
-
-
2542440526
-
Scale-free networks and sexually transmitted diseases: A description of observed patterns of sexual contacts in Britain and Zimbabwe
-
DOI 10.1097/00007435-200406000-00012
-
Schneeberger A, Mercer CH, Gregson SA, et al. Scale-free networks and sexually transmitted diseases: a description of observed patterns of sexual contacts in Britain and Zimbabwe. Sex Transm Dis 2004; 31:380-7. (Pubitemid 38691970)
-
(2004)
Sexually Transmitted Diseases
, vol.31
, Issue.6
, pp. 380-387
-
-
Schneeberger, A.1
Nat, R.2
Mercer, C.H.3
Gregson, S.A.J.4
Ferguson, N.M.5
Nyamukapa, C.A.6
Anderson, R.M.7
Johnson, A.M.8
Garnett, G.P.9
-
29
-
-
33144487060
-
Men who have sex with men: A comparison of a probability sample survey and a community based study
-
DOI 10.1136/sti.2005.015248
-
Dodds JP, Mercer CH, Mercey DE, Copas AJ, Johnson AM. Men who have sex with men: a comparison of a probability sample survey and a community based study. Sex Transm Infect 2006; 82:86-7. (Pubitemid 43266172)
-
(2006)
Sexually Transmitted Infections
, vol.82
, Issue.1
, pp. 86-87
-
-
Dodds, J.P.1
Mercer, C.H.2
Mercey, D.E.3
Copas, A.J.4
Johnson, A.M.5
-
30
-
-
0024398861
-
Risk behavior-based model of the cubic growth of acquired immunodeficiency syndrome in the United States
-
Colgate SA, Stanley EA, Hyman JM, Layne SP, Qualls C. Risk behaviorbased model of the cubic growth of acquired immunodeficiency syndrome in the United States. Proc Natl Acad Sci USA 1989; 86:4793-7. (Pubitemid 19164636)
-
(1989)
Proceedings of the National Academy of Sciences of the United States of America
, vol.86
, Issue.12
, pp. 4793-4797
-
-
Colgate, S.A.1
Stanley, E.A.2
Hyman, J.M.3
Layne, S.P.4
Qualls, C.5
-
31
-
-
0037834802
-
Sexual contacts and epidemic thresholds
-
DOI 10.1038/423605a
-
Jones JH, Handcock MS. Social networks: sexual contacts and epidemic thresholds. Nature 2003; 423:605-6. (Pubitemid 36713213)
-
(2003)
Nature
, vol.423
, Issue.6940
, pp. 605-606
-
-
Jones, J.H.1
Handcock, M.S.2
-
33
-
-
0037526119
-
An assessment of preferential attachment as a mechanism for human sexual network formation
-
DOI 10.1098/rspb.2003.2369
-
Jones JH, Handcock MS. An assessment of preferential attachment as a mechanism for human sexual network formation. Proc R Soc Lond B 2003; 270:1123-8. (Pubitemid 36683455)
-
(2003)
Proceedings of the Royal Society B: Biological Sciences
, vol.270
, Issue.1520
, pp. 1123-1128
-
-
Jones, J.H.1
Handcock, M.S.2
-
34
-
-
0001778604
-
A mathematical theory of evolution, based on the conclusions of Dr J.C. Willis F.R.S
-
Yule GU. A mathematical theory of evolution, based on the conclusions of Dr J.C. Willis F.R.S. Phil Trans R Soc Lond B 1925; 213:21-87.
-
(1925)
Phil Trans R Soc Lond B
, vol.213
, pp. 21-87
-
-
Yule, G.U.1
-
35
-
-
0000567525
-
Fitting the negative binomial distribution to biological data
-
Bliss CI, Fisher RA. Fitting the negative binomial distribution to biological data. Biometrics 1953; 9:176-200.
-
(1953)
Biometrics
, vol.9
, pp. 176-200
-
-
Bliss, C.I.1
Fisher, R.A.2
-
36
-
-
34249825779
-
Tenofovir disoproxil fumarate for prevention of HIV infection in women: A phase 2, double-blind, randomized, placebo-controlled trial
-
Peterson L, Taylor D, Roddy R, et al. Tenofovir disoproxil fumarate for prevention of HIV infection in women: a phase 2, double-blind, randomized, placebo-controlled trial. PLoS Clin Trials 2007; 2:e27.
-
(2007)
PLoS Clin Trials
, vol.2
-
-
Peterson, L.1
Taylor, D.2
Roddy, R.3
-
37
-
-
78650549662
-
Preexposure chemoprophylaxis for HIV prevention in men who have sex with men
-
Grant RM, Lama JR, Anderson PL, et al. Preexposure chemoprophylaxis for HIV prevention in men who have sex with men. N Engl J Med 2010; 363:2587-99.
-
(2010)
N Engl J Med
, vol.363
, pp. 2587-2599
-
-
Grant, R.M.1
Lama, J.R.2
Anderson, P.L.3
-
38
-
-
62449261120
-
HIV preexposure prophylaxis in the United States: Impact on lifetime infection risk, clinical outcomes, and cost-effectiveness
-
Paltiel AD, Freedberg KA, Scott CA, et al. HIV preexposure prophylaxis in the United States: impact on lifetime infection risk, clinical outcomes, and cost-effectiveness. Clin Infect Dis 2009; 48:806-15.
-
(2009)
Clin Infect Dis
, vol.48
, pp. 806-815
-
-
Paltiel, A.D.1
Freedberg, K.A.2
Scott, C.A.3
|