-
1
-
-
0036590892
-
Dynamics of measles epidemics: Estimating scaling of transmission rates using a time series SIR model
-
Bjornstad, O. N., Finkenstadt, B. F. & Grenfell, B. T. 2002 Dynamics of measles epidemics: estimating scaling of transmission rates using a time series SIR model. Ecol. Monogr. 72, 169-184.
-
(2002)
Ecol. Monogr.
, vol.72
, pp. 169-184
-
-
Bjornstad, O.N.1
Finkenstadt, B.F.2
Grenfell, B.T.3
-
2
-
-
0029654470
-
Space, persistence and dynamics of measles epidemics
-
doi:10.1098/rstb.1995.0070
-
Bolker, B. & Grenfell, B. 1995 Space, persistence and dynamics of measles epidemics. Phil. Trans. R. Soc. Lond. B 348, 309-320. (doi:10.1098/rstb.1995.0070)
-
(1995)
Phil. Trans. R. Soc. Lond. B
, vol.348
, pp. 309-320
-
-
Bolker, B.1
Grenfell, B.2
-
3
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
doi:10.1186/1471-2148-7-214
-
Drummond, A. J. & Rambaut, A. 2007 BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7, 214. (doi:10.1186/1471-2148-7- 214)
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
4
-
-
17744381574
-
Bayesian coalescent inference of past population dynamics from molecular sequences
-
doi:10.1093/molbev/msi103
-
Drummond, A. J., Rambaut, A., Shapiro, B. & Pybus, O. G. 2005 Bayesian coalescent inference of past population dynamics from molecular sequences. Mol. Biol. Evol. 22, 1185-1192. (doi:10.1093/molbev/msi103)
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1185-1192
-
-
Drummond, A.J.1
Rambaut, A.2
Shapiro, B.3
Pybus, O.G.4
-
5
-
-
0034723248
-
A simple model for complex dynamical transitions in epidemics
-
DOI 10.1126/science.287.5453.667
-
Earn, D. J., Rohani, P., Bolker, B. M. & Grenfell, B. T. 2000 A simple model for complex dynamical transitions in epidemics. Science 287, 667-670. (doi:10.1126/science.287.5453.667) (Pubitemid 30070917)
-
(2000)
Science
, vol.287
, Issue.5453
, pp. 667-670
-
-
Earn, D.J.D.1
Rohani, P.2
Bolker, B.M.3
Grenfell, B.T.4
-
6
-
-
0037468827
-
Ecological and immunological determinants of influenza evolution
-
doi:10.1038/nature01509
-
Ferguson, N. M., Galvani, A. P. & Bush, R. M. 2003 Ecological and immunological determinants of influenza evolution. Nature 422, 428-433. (doi:10.1038/nature01509)
-
(2003)
Nature
, vol.422
, pp. 428-433
-
-
Ferguson, N.M.1
Galvani, A.P.2
Bush, R.M.3
-
7
-
-
0003220545
-
A stochastic model for extinction and recurrence of epidemics: Estimation and inference for measles outbreaks
-
doi:10.1093/biostatistics/3.4.493
-
Finkenstadt, B. F., Bjornstad, O. N. & Grenfell, B. T. 2002 A stochastic model for extinction and recurrence of epidemics: estimation and inference for measles outbreaks. Biostatistics 3, 493-510. (doi:10.1093/ biostatistics/3.4.493)
-
(2002)
Biostatistics
, vol.3
, pp. 493-510
-
-
Finkenstadt, B.F.1
Bjornstad, O.N.2
Grenfell, B.T.3
-
8
-
-
0038485591
-
Interpreting time-series analyses for continuous-time biological models - Measles as a case study
-
doi:10.1016/S0022-5193(03)00031-6
-
Glass, K., Xia, Y. & Grenfell, B. T. 2003 Interpreting time-series analyses for continuous-time biological models - measles as a case study. J. Theor. Biol. 223, 19-25. (doi:10.1016/S0022-5193(03)00031-6)
-
(2003)
J. Theor. Biol.
, vol.223
, pp. 19-25
-
-
Glass, K.1
Xia, Y.2
Grenfell, B.T.3
-
9
-
-
54049113113
-
On-line global/WHO-European regional measles nucleotide surveillance
-
Gnaneshan, S., Brown, K. E., Green, J. & Brown, D. W. 2008 On-line global/WHO-European regional measles nucleotide surveillance. Euro Surveill. 13, 18 861.
-
(2008)
Euro Surveill.
, vol.13
, pp. 18861
-
-
Gnaneshan, S.1
Brown, K.E.2
Green, J.3
Brown, D.W.4
-
10
-
-
0028811937
-
Seasonality and extinction in chaotic metapopulations
-
doi:10.1098/rspb.1995.0015
-
Grenfell, B. T., Bolker, B. M. & Kleczkowski, A. 1995 Seasonality and extinction in chaotic metapopulations. Proc. Biol. Sci. 259, 97-103. (doi:10.1098/rspb.1995.0015)
-
(1995)
Proc. Biol. Sci.
, vol.259
, pp. 97-103
-
-
Grenfell, B.T.1
Bolker, B.M.2
Kleczkowski, A.3
-
11
-
-
0036590803
-
Dynamics of measles epidemics: Scaling noise, determinism, and predictability with the TSIR model
-
Grenfell, B. T., Bjornstad, O. N. & Finkenstadt, B. F. 2002 Dynamics of measles epidemics: scaling noise, determinism, and predictability with the TSIR model. Ecol. Monogr. 72, 185-202.
-
(2002)
Ecol. Monogr.
, vol.72
, pp. 185-202
-
-
Grenfell, B.T.1
Bjornstad, O.N.2
Finkenstadt, B.F.3
-
12
-
-
0346373759
-
Unifying the epidemiological and evolutionary dynamics of pathogens
-
doi:10.1126/science.1090727
-
Grenfell, B. T., Pybus, O. G., Gog, J. R., Wood, J. L., Daly, J. M., Mumford, J. A. & Holmes, E. C. 2004 Unifying the epidemiological and evolutionary dynamics of pathogens. Science 303, 327-332. (doi:10.1126/science. 1090727)
-
(2004)
Science
, vol.303
, pp. 327-332
-
-
Grenfell, B.T.1
Pybus, O.G.2
Gog, J.R.3
Wood, J.L.4
Daly, J.M.5
Mumford, J.A.6
Holmes, E.C.7
-
13
-
-
0042591061
-
WHO European region's strategy for elimination of measles and congenital rubella infection
-
Hanon, F. X., John, J. S., Steven, S. W. & Emiroglu, N. 2003 WHO European region's strategy for elimination of measles and congenital rubella infection. Euro Surveill. 8, 129-130.
-
(2003)
Euro Surveill.
, vol.8
, pp. 129-130
-
-
Hanon, F.X.1
John, J.S.2
Steven, S.W.3
Emiroglu, N.4
-
14
-
-
0022376704
-
Dating of the human - Ape splitting by a molecular clock of mitochondrial DNA
-
doi:10.1007/BF02101694
-
Hasegawa, M., Kishino, H. & Yano, T. 1985 Dating of the human - ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22, 160-174. (doi:10.1007/BF02101694)
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
15
-
-
5044229945
-
-
Oxford, UK: Oxford University Press
-
Hein, J., Schierup, M. H. & Wiuf, C. 2005 Gene genealogies, variation and evolution: a primer in coalescent theory. Oxford, UK: Oxford University Press.
-
(2005)
Gene Genealogies, Variation and Evolution: A Primer in Coalescent Theory
-
-
Hein, J.1
Schierup, M.H.2
Wiuf, C.3
-
16
-
-
60549111699
-
Bayesian inference of population size history from multiple loci
-
doi:10.1186/1471-2148-8-289
-
Heled, J. & Drummond, A. 2008 Bayesian inference of population size history from multiple loci. BMC Evol. Biol. 8, 289. (doi:10.1186/1471-2148-8- 289)
-
(2008)
BMC Evol. Biol.
, vol.8
, pp. 289
-
-
Heled, J.1
Drummond, A.2
-
17
-
-
49649108573
-
Comparative studies of RNA virus evolution
-
(eds E. Domingo, C. R. Parrish & J. J. Holland), 2nd edn. London, UK: Academic Press
-
Holmes, E. C. 2008 Comparative studies of RNA virus evolution. In Origin and evolution of viruses (eds E. Domingo, C. R. Parrish & J. J. Holland), pp. 119-134, 2nd edn. London, UK: Academic Press.
-
(2008)
Origin and Evolution of Viruses
, pp. 119-134
-
-
Holmes, E.C.1
-
18
-
-
33646814776
-
Genetic variability of measles virus in acute and persistent infections
-
Khne, M., Brown, D. W. G. & Jin, L. 2006 Genetic variability of measles virus in acute and persistent infections. Infect. Genet. Evol. 6, 269-276.
-
(2006)
Infect. Genet. Evol.
, vol.6
, pp. 269-276
-
-
Khne, M.1
Brown, D.W.G.2
Jin, L.3
-
19
-
-
45849122039
-
Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
-
doi:10.1093/molbev/msn090
-
Minin, V. N., Bloomquist, E. W. & Suchard, M. A. 2008 Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Mol. Biol. Evol. 25, 1459-1471. (doi:10.1093/molbev/msn090)
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1459-1471
-
-
Minin, V.N.1
Bloomquist, E.W.2
Suchard, M.A.3
-
20
-
-
50849132217
-
Molecular epidemiology of a/h3n2 and a/h1n1 influenza virus during a single epidemic season in the United States
-
doi:10.1371/journal.ppat.1000133
-
Nelson, M. I. et al. 2008 Molecular epidemiology of a/h3n2 and a/h1n1 influenza virus during a single epidemic season in the United States. PLoS Pathog. 4, e1000133. (doi:10.1371/journal.ppat.1000133)
-
(2008)
PLoS Pathog.
, vol.4
-
-
Nelson, M.I.1
-
21
-
-
1042304216
-
APE: Analyses of phylogenetics and evolution in R language
-
DOI 10.1093/bioinformatics/btg412
-
Paradis, E., Claude, J. & Strimmer, K. 2004 APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20, 289-290. (doi:10.1093/bioinformatics/btg412) (Pubitemid 38195693)
-
(2004)
Bioinformatics
, vol.20
, Issue.2
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
22
-
-
0033911330
-
An integrated framework for the inference of viral population history from reconstructed genealogies
-
Pybus, O. G., Rambaut, A. & Harvey, P. H. 2000 An integrated framework for the inference of viral population history from reconstructed genealogies. Genetics 155, 1429-1437. (Pubitemid 30463449)
-
(2000)
Genetics
, vol.155
, Issue.3
, pp. 1429-1437
-
-
Pybus, O.G.1
Rambaut, A.2
Harvey, P.H.3
-
23
-
-
50849124850
-
-
v1.4. Available from
-
Rambaut, A. & Drummond, A. J. 2007 Tracer v1.4. Available from http://beast.bio.ed.ac.uk/Tracer.
-
(2007)
Tracer
-
-
Rambaut, A.1
Drummond, A.J.2
-
24
-
-
44449164435
-
The genomic and epidemiological dynamics of human influenza a virus
-
DOI 10.1038/nature06945, PII NATURE06945
-
Rambaut, A., Pybus, O. G., Nelson, M. I., Viboud, C., Taubenberger, J. K. & Holmes, E. C. 2008 The genomic and epidemiological dynamics of human influenza a virus. Nature 453, 615-619. (doi:10.1038/nature06945) (Pubitemid 351769300)
-
(2008)
Nature
, vol.453
, Issue.7195
, pp. 615-619
-
-
Rambaut, A.1
Pybus, O.G.2
Nelson, M.I.3
Viboud, C.4
Taubenberger, J.K.5
Holmes, E.C.6
-
25
-
-
24744447427
-
Unifying the spatial population dynamics and molecular evolution of epidemic rabies virus
-
doi:10.1073/pnas.0500057102
-
Real, L. A. et al. 2005 Unifying the spatial population dynamics and molecular evolution of epidemic rabies virus. Proc. Natl Acad. Sci. USA 102, 12 107-12 111. (doi:10.1073/pnas.0500057102)
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 12107-12111
-
-
Real, L.A.1
-
26
-
-
33846885913
-
Vaccination and the dynamics of immune evasion
-
doi:10.1098/rsif.2006.0167
-
Restif, O. & Grenfell, B. T. 2007 Vaccination and the dynamics of immune evasion. J. R. Soc. Interface 4, 143-153. (doi:10.1098/rsif.2006.0167)
-
(2007)
J. R. Soc. Interface
, vol.4
, pp. 143-153
-
-
Restif, O.1
Grenfell, B.T.2
-
27
-
-
58249115913
-
Molecular epidemiology of measles virus
-
Measles: pathogenesis and control. Berlin, Germany: Springer
-
Rota, P. A., Featherstone, D. A. & Bellini, W. J. 2009 Molecular epidemiology of measles virus. In Measles: pathogenesis and control. Current Topics in Microbiology and Immunology, vol. 330, pp. 129-150. Berlin, Germany: Springer.
-
(2009)
Current Topics in Microbiology and Immunology
, vol.330
, pp. 129-150
-
-
Rota, P.A.1
Featherstone, D.A.2
Bellini, W.J.3
-
28
-
-
0036166770
-
A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times
-
Seo, T.-K., Thorne, J. L., Hasegawa, M. & Kishino, H. 2002 A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times. Bioinformatics 18, 115-123. (doi:10.1093/ bioinformatics/18.1.115) (Pubitemid 34145039)
-
(2002)
Bioinformatics
, vol.18
, Issue.1
, pp. 115-123
-
-
Seo, T.-K.1
Thorne, J.L.2
Hasegawa, M.3
Kishino, H.4
-
29
-
-
3142682239
-
Mapping the antigenic and genetic evolution of influenza virus
-
doi:10.1126/science.1097211
-
Smith, D. J., Lapedes, A. S., de Jong, J. C., Bestebroer, T. M., Rimmelzwaan, G. F., Osterhaus, A. D. M. E. & Fouchier, R. A. M. 2004 Mapping the antigenic and genetic evolution of influenza virus. Science 305, 371-376. (doi:10.1126/science.1097211)
-
(2004)
Science
, vol.305
, pp. 371-376
-
-
Smith, D.J.1
Lapedes, A.S.2
De Jong, J.C.3
Bestebroer, T.M.4
Rimmelzwaan, G.F.5
Osterhaus, A.D.M.E.6
Fouchier, R.A.M.7
-
30
-
-
0035211479
-
Exploring the demographic history of DNA sequences using the generalized skyline plot
-
Strimmer, K. & Pybus, O. G. 2001 Exploring the demographic history of DNA sequences using the generalized skyline plot. Mol. Biol. Evol. 18, 2298-2305.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 2298-2305
-
-
Strimmer, K.1
Pybus, O.G.2
-
31
-
-
4143075752
-
Measles metapopulation dynamics: A gravity model for epidemiological coupling and dynamics
-
doi:10.1086/422341
-
Xia, Y., Bjornstad, O. N. & Grenfell, B. T. 2004 Measles metapopulation dynamics: a gravity model for epidemiological coupling and dynamics. Am. Nat. 164, 267-281. (doi:10.1086/422341)
-
(2004)
Am. Nat.
, vol.164
, pp. 267-281
-
-
Xia, Y.1
Bjornstad, O.N.2
Grenfell, B.T.3
-
32
-
-
33847217203
-
Molecular epidemiology of measles viruses in China, 1995-2003
-
doi:10.1186/1743-422X-4-14
-
Zhang, Y. et al. 2007 Molecular epidemiology of measles viruses in China, 1995-2003. Virol. J. 4, 14. (doi:10.1186/1743-422X-4-14)
-
(2007)
Virol. J.
, vol.4
, pp. 14
-
-
Zhang, Y.1
|