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Volumn 7, Issue 50, 2010, Pages 1257-1274

A two-tiered model for simulating the ecological and evolutionary dynamics of rapidly evolving viruses, with an application to influenza

Author keywords

Disease dynamics; Influenza; Multi strain model; Phylodynamics; Viral evolution

Indexed keywords

DYNAMICS; ECOLOGY; MOLECULAR BIOLOGY; VIRUSES;

EID: 77956596198     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2010.0007     Document Type: Review
Times cited : (44)

References (70)
  • 1
    • 0031203954 scopus 로고    scopus 로고
    • The dynamics of co-circulating influenza strains conferring partial cross-immunity
    • doi:10.1007/s002850050079
    • Andreasen, V., Lin, J. & Levin, S. A. 1997 The dynamics of co-circulating influenza strains conferring partial cross-immunity. J. Math. Biol. 35, 825-842. (doi:10.1007/s002850050079)
    • (1997) J. Math. Biol. , vol.35 , pp. 825-842
    • Andreasen, V.1    Lin, J.2    Levin, S.A.3
  • 2
    • 70449397091 scopus 로고    scopus 로고
    • Influenza a gradual and epochal evolution: Insights from simple models
    • doi:10.1371/journal.pone.0007426
    • Ballesteros, S., Vergu, E. & Cazelles, B. 2009 Influenza A gradual and epochal evolution: insights from simple models. PLoS ONE 4, e7426. (doi:10.1371/journal.pone.0007426)
    • (2009) PLoS ONE , vol.4
    • Ballesteros, S.1    Vergu, E.2    Cazelles, B.3
  • 3
    • 0025043049 scopus 로고
    • Genetic drift of equine 2 influenza A virus (H3N8), 1963-1988: Analysis by oligonucleotide mapping
    • doi:10.1016/0378-1135(90)90109-9
    • Berg, M., Desselberger, U., Abusugra, I. A., Klingeborn, B. & Linné, T. 1990 Genetic drift of equine 2 influenza A virus (H3N8), 1963-1988: analysis by oligonucleotide mapping. Vet. Microbiol. 22, 225-236. (doi:10.1016/0378-1135(90)90109-9)
    • (1990) Vet. Microbiol. , vol.22 , pp. 225-236
    • Berg, M.1    Desselberger, U.2    Abusugra, I.A.3    Klingeborn, B.4    Linné, T.5
  • 4
    • 0021752426 scopus 로고
    • Antigenic structure of the influenza B virus hemagglutinin: Nucleotide sequence analysis of antigenic variants selected with monoclonal antibodies
    • Berton, M. T., Naeve, C. W. & Webster, R. G. 1984 Antigenic structure of the influenza B virus hemagglutinin: nucleotide sequence analysis of antigenic variants selected with monoclonal antibodies. J. Virol. 52, 919-927.
    • (1984) J. Virol. , vol.52 , pp. 919-927
    • Berton, M.T.1    Naeve, C.W.2    Webster, R.G.3
  • 5
    • 44449115278 scopus 로고    scopus 로고
    • Changing selective pressure during antigenic changes in human influenza H3
    • doi:10.1371/journal.ppat.1000058
    • Blackburne, B. P., Hay, A. J. & Goldstein, R. A. 2008 Changing selective pressure during antigenic changes in human influenza H3. PLoS Pathog. 4, e1 000 058. (doi:10.1371/journal.ppat.1000058)
    • (2008) PLoS Pathog. , vol.4
    • Blackburne, B.P.1    Hay, A.J.2    Goldstein, R.A.3
  • 6
    • 0033671548 scopus 로고    scopus 로고
    • Reconstructing susceptible and recruitment dynamics from measles incidence data
    • doi:10.1080/08898480009525471
    • Bobashev, G. V., Ellner, S. P., Nychka, D. W. & Grenfell, B. T. 2000 Reconstructing susceptible and recruitment dynamics from measles incidence data. Math. Popul. Stud. 8, 1-29. (doi:10.1080/08898480009525471)
    • (2000) Math. Popul. Stud. , vol.8 , pp. 1-29
    • Bobashev, G.V.1    Ellner, S.P.2    Nychka, D.W.3    Grenfell, B.T.4
  • 7
    • 67349178626 scopus 로고    scopus 로고
    • Antigenic and genetic variations in European and North American equine influenza virus strains (H3N8) isolated from 2006 to 2007
    • doi:10.1016/j.vetmic.2009.03.004
    • Bryant, N. A. et al. 2009 Antigenic and genetic variations in European and North American equine influenza virus strains (H3N8) isolated from 2006 to 2007. Vet. Microbiol. 138, 41-52. (doi:10.1016/j.vetmic.2009.03.004)
    • (2009) Vet. Microbiol. , vol.138 , pp. 41-52
    • Bryant, N.A.1
  • 9
    • 51449113044 scopus 로고    scopus 로고
    • Capturing escape in infectious disease dynamics
    • doi:10.1016/j.tree.2008.06.008
    • Cobey, S. & Koelle, K. 2008 Capturing escape in infectious disease dynamics. Trends Ecol. Evol. 23, 572-577. (doi:10.1016/j.tree.2008.06.008)
    • (2008) Trends Ecol. Evol. , vol.23 , pp. 572-577
    • Cobey, S.1    Koelle, K.2
  • 10
    • 0029971526 scopus 로고    scopus 로고
    • Antigenic and genetic evolution of equine H3N8 influenza A viruses
    • doi:10.1099/0022-1317-77-4-661
    • Daly, J. M., Lai, A. C., Binns, M. M., Chambers, T. M., Barrandeguy, M. & Mumford, J. A. 1996 Antigenic and genetic evolution of equine H3N8 influenza A viruses. J. Gen. Virol. 77, 661-671. (doi:10.1099/0022-1317-77-4- 661)
    • (1996) J. Gen. Virol. , vol.77 , pp. 661-671
    • Daly, J.M.1    Lai, A.C.2    Binns, M.M.3    Chambers, T.M.4    Barrandeguy, M.5    Mumford, J.A.6
  • 11
    • 36849026746 scopus 로고    scopus 로고
    • Genetic characterization of equine influenza viruses isolated in Italy between 1999 and 2005
    • doi:10.1016/j.virusres.2007.08.001
    • Damiani, A. M. et al. 2008 Genetic characterization of equine influenza viruses isolated in Italy between 1999 and 2005. Virus Res. 131, 100-105. (doi:10.1016/j.virusres.2007.08.001)
    • (2008) Virus Res. , vol.131 , pp. 100-105
    • Damiani, A.M.1
  • 12
    • 0021955626 scopus 로고
    • Amino acid sequences of haemagglutinins of influenza viruses of the H3 subtype isolated from horses
    • doi:10.1099/0022-1317-66-3-457
    • Daniels, R. S., Skehel, J. J. & Wiley, D. C. 1985 Amino acid sequences of haemagglutinins of influenza viruses of the H3 subtype isolated from horses. J. Gen. Virol. 66, 457-464. (doi:10.1099/0022-1317-66-3-457)
    • (1985) J. Gen. Virol. , vol.66 , pp. 457-464
    • Daniels, R.S.1    Skehel, J.J.2    Wiley, D.C.3
  • 13
    • 0026469425 scopus 로고
    • Evolutionary pattern of the H3 haemagglutinin of equine influenza viruses: Multiple evolutionary lineages and frozen replication
    • doi:10.1007/BF01317139
    • Endo, A., Pecoraro, R., Sugita, S. & Nerome, K. 1992 Evolutionary pattern of the H3 haemagglutinin of equine influenza viruses: multiple evolutionary lineages and frozen replication. Arch. Virol. 123, 73-87. (doi:10.1007/BF01317139)
    • (1992) Arch. Virol. , vol.123 , pp. 73-87
    • Endo, A.1    Pecoraro, R.2    Sugita, S.3    Nerome, K.4
  • 15
    • 0037468827 scopus 로고    scopus 로고
    • Ecological and immunological determinants of influenza evolution
    • doi:10.1038/nature01509
    • Ferguson, N. M., Galvani, A. P. & Bush, R. M. 2003 Ecological and immunological determinants of influenza evolution. Nature 422, 428-433. (doi:10.1038/nature01509)
    • (2003) Nature , vol.422 , pp. 428-433
    • Ferguson, N.M.1    Galvani, A.P.2    Bush, R.M.3
  • 16
    • 0034360414 scopus 로고    scopus 로고
    • Time series modelling of childhood diseases: A dynamical systems approach
    • doi:10.1111/1467-9876.00187
    • Finkenstädt, B. & Grenfell, B. 2000 Time series modelling of childhood diseases: a dynamical systems approach. J. R. Stat. Soc. Ser. C 49, 187-205. (doi:10.1111/1467-9876.00187)
    • (2000) J. R. Stat. Soc. Ser. C , vol.49 , pp. 187-205
    • Finkenstädt, B.1    Grenfell, B.2
  • 17
    • 0030750055 scopus 로고    scopus 로고
    • Long term trends in the evolution of H(3) HA1 human influenza type A
    • doi:10.1073/pnas.94.15.7712
    • Fitch, W. M., Bush, R. M., Bender, C. A. & Cox, N. J. 1997 Long term trends in the evolution of H(3) HA1 human influenza type A. Proc. Natl Acad. Sci. USA 94, 7712-7718. (doi:10.1073/pnas.94.15.7712)
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 7712-7718
    • Fitch, W.M.1    Bush, R.M.2    Bender, C.A.3    Cox, N.J.4
  • 18
    • 67249138142 scopus 로고    scopus 로고
    • Pandemic potential of a strain of influenza A (H1N1): Early findings
    • doi:10.1126/science.1176062
    • Fraser, C. et al. 2009 Pandemic potential of a strain of influenza A (H1N1): early findings. Science 324, 1557-1561. (doi:10.1126/science.1176062)
    • (2009) Science , vol.324 , pp. 1557-1561
    • Fraser, C.1
  • 19
    • 0017568906 scopus 로고
    • Naturally acquired immunity to influenza type A: A further prospective study
    • Gill, P. W. & Murphy, A. M. 1977 Naturally acquired immunity to influenza type A: a further prospective study. Med. J. Aust. 2, 761-765.
    • (1977) Med. J. Aust. , vol.2 , pp. 761-765
    • Gill, P.W.1    Murphy, A.M.2
  • 20
    • 34249950625 scopus 로고    scopus 로고
    • Stochastic simulation of chemical kinetics
    • doi:10.1146/annurev.physchem.58.032806.104637
    • Gillespie, D. T. 2007 Stochastic simulation of chemical kinetics. Annu. Rev. Phys. Chem. 58, 35-55. (doi:10.1146/annurev.physchem.58.032806.104637)
    • (2007) Annu. Rev. Phys. Chem. , vol.58 , pp. 35-55
    • Gillespie, D.T.1
  • 22
    • 0037168563 scopus 로고    scopus 로고
    • Dynamics and selection of many-strain pathogens
    • doi:10.1073/pnas.252512799
    • Gog, J. R. & Grenfell, B. T. 2002 Dynamics and selection of many-strain pathogens. Proc. Natl Acad. Sci. USA 99, 17 209-17 214. (doi:10.1073/pnas.252512799)
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 17209-17214
    • Gog, J.R.1    Grenfell, B.T.2
  • 23
    • 0141702339 scopus 로고    scopus 로고
    • Population dynamics of rapid fixation in cytotoxic T lymphocyte escape mutants of influenza A
    • doi:10.1073/pnas.1830296100
    • Gog, J. R., Rimmelzwaan, G. F., Osterhaus, A. D. M. E. & Grenfell, B. T. 2003 Population dynamics of rapid fixation in cytotoxic T lymphocyte escape mutants of influenza A. Proc. Natl Acad. Sci. USA 100, 11 143-11 147. (doi:10.1073/pnas.1830296100)
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 11143-11147
    • Gog, J.R.1    Rimmelzwaan, G.F.2    Osterhaus, A.D.M.E.3    Grenfell, B.T.4
  • 24
    • 33846855361 scopus 로고    scopus 로고
    • The reinfection threshold regulates pathogen diversity: The case of influenza
    • doi:10.1098/rsif.2006.0159
    • Gökaydin, D., Oliveira-Martins, J. B., Gordo, I. & Gomes, M. G. M. 2007 The reinfection threshold regulates pathogen diversity: the case of influenza. J. R. Soc. Interface 4, 137-142. (doi:10.1098/rsif.2006.0159)
    • (2007) J. R. Soc. Interface , vol.4 , pp. 137-142
    • Gökaydin, D.1    Oliveira-Martins, J.B.2    Gordo, I.3    Gomes, M.G.M.4
  • 25
    • 0346373759 scopus 로고    scopus 로고
    • Unifying the epidemiological and evolutionary dynamics of pathogens
    • doi:10.1126/science.1090727
    • Grenfell, B. T., Pybus, O. G., Gog, J. R., Wood, J. L. N., Daly, J. M., Mumford, J. A. & Holmes, E. C. 2004 Unifying the epidemiological and evolutionary dynamics of pathogens. Science 303, 327-332. (doi:10.1126/science. 1090727)
    • (2004) Science , vol.303 , pp. 327-332
    • Grenfell, B.T.1    Pybus, O.G.2    Gog, J.R.3    Wood, J.L.N.4    Daly, J.M.5    Mumford, J.A.6    Holmes, E.C.7
  • 27
    • 70350476886 scopus 로고    scopus 로고
    • Discovering the phylodynamics of RNA viruses
    • doi:10.1371/journal.pcbi.1000505
    • Holmes, E. C. & Grenfell, B. T. 2009 Discovering the phylodynamics of RNA viruses. PLoS Comput. Biol. 5, e1000505. (doi:10.1371/journal.pcbi.1000505)
    • (2009) PLoS Comput. Biol. , vol.5
    • Holmes, E.C.1    Grenfell, B.T.2
  • 28
    • 0031862128 scopus 로고    scopus 로고
    • Direct sequencing of the HA gene of clinical equine H3N8 influenza virus and comparison with laboratory derived viruses
    • doi:10.1007/s007050050340
    • Ilobi, C. P., Nicolson, C., Taylor, J., Mumford, J. A., Wood, J. M. & Robertson, J. S. 1998 Direct sequencing of the HA gene of clinical equine H3N8 influenza virus and comparison with laboratory derived viruses. Arch. Virol. 143, 891-901. (doi:10.1007/s007050050340)
    • (1998) Arch. Virol. , vol.143 , pp. 891-901
    • Ilobi, C.P.1    Nicolson, C.2    Taylor, J.3    Mumford, J.A.4    Wood, J.M.5    Robertson, J.S.6
  • 29
    • 33845508786 scopus 로고    scopus 로고
    • Inference for nonlinear dynamical systems
    • doi:10.1073/pnas.0603181103
    • Ionides, E. L., Bretó, C. & King, A. A. 2006 Inference for nonlinear dynamical systems. Proc. Natl Acad. Sci. USA 103, 18 438-18 443. (doi:10.1073/pnas.0603181103)
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 18438-18443
    • Ionides, E.L.1    Bretó, C.2    King, A.A.3
  • 30
    • 0024538735 scopus 로고
    • Evolution of the hemagglutinin of equine H3 influenza viruses
    • doi:10.1016/0042-6822(89)90153-0
    • Kawaoka, Y., Bean, W. J. & Webster, R. G. 1989 Evolution of the hemagglutinin of equine H3 influenza viruses. Virology 169, 283-292. (doi:10.1016/0042-6822(89)90153-0)
    • (1989) Virology , vol.169 , pp. 283-292
    • Kawaoka, Y.1    Bean, W.J.2    Webster, R.G.3
  • 31
    • 49649105737 scopus 로고    scopus 로고
    • Inapparent infections and cholera dynamics
    • doi:10.1038/nature07084
    • King, A. A., Ionides, E. L., Pascual, M. & Bouma, M. J. 2008 Inapparent infections and cholera dynamics. Nature 454, 877-880. (doi:10.1038/nature07084)
    • (2008) Nature , vol.454 , pp. 877-880
    • King, A.A.1    Ionides, E.L.2    Pascual, M.3    Bouma, M.J.4
  • 32
    • 3042720552 scopus 로고    scopus 로고
    • Disentangling extrinsic from intrinsic factors in disease dynamics: A nonlinear time series approach with an application to cholera
    • doi:10.1086/420798
    • Koelle, K. & Pascual, M. 2004 Disentangling extrinsic from intrinsic factors in disease dynamics: a nonlinear time series approach with an application to cholera. Am. Nat. 163, 901-913. (doi:10.1086/420798)
    • (2004) Am. Nat. , vol.163 , pp. 901-913
    • Koelle, K.1    Pascual, M.2
  • 33
    • 33845879635 scopus 로고    scopus 로고
    • Epochal evolution shapes the phylodynamics of influenza A (H3N2) in humans
    • doi:10.1126/science.1132745
    • Koelle, K., Cobey, S., Grenfell, B. & Pascual, M. 2006 Epochal evolution shapes the phylodynamics of influenza A (H3N2) in humans. Science 314, 1898-1903. (doi:10.1126/science.1132745)
    • (2006) Science , vol.314 , pp. 1898-1903
    • Koelle, K.1    Cobey, S.2    Grenfell, B.3    Pascual, M.4
  • 34
    • 67649432813 scopus 로고    scopus 로고
    • Understanding the dynamics of rapidly evolving pathogens through modeling the tempo of antigenic change: Influenza as a case study
    • doi:10.1016/j.epidem.2009.05.003
    • Koelle, K., Kamradt, M. & Pascual, M. 2009 Understanding the dynamics of rapidly evolving pathogens through modeling the tempo of antigenic change: influenza as a case study. Epidemics 1, 129-137. (doi:10.1016/j.epidem.2009.05. 003)
    • (2009) Epidemics , vol.1 , pp. 129-137
    • Koelle, K.1    Kamradt, M.2    Pascual, M.3
  • 35
    • 1442299809 scopus 로고    scopus 로고
    • Alternate circulation of recent equine-2 influenza viruses (H3N8) from two distinct lineages in the United States
    • doi:10.1016/j.virusres.2003.11.019
    • Lai, A. C., Rogers, K. M., Rogers, K. M. & Chamber, T. 2004 Alternate circulation of recent equine-2 influenza viruses (H3N8) from two distinct lineages in the United States. Virus Res. 100, 159-164. (doi:10.1016/j.virusres. 2003.11.019)
    • (2004) Virus Res. , vol.100 , pp. 159-164
    • Lai, A.C.1    Rogers, K.M.2    Rogers, K.M.3    Chamber, T.4
  • 36
    • 0025101549 scopus 로고
    • Theory for protein mutability and biogenesis
    • doi:10.1073/pnas.87.2.638
    • Lau, K. F. & Dill, K. A. 1990 Theory for protein mutability and biogenesis. Proc. Natl Acad. Sci. USA 87, 638-642. (doi:10.1073/pnas.87.2.638)
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 638-642
    • Lau, K.F.1    Dill, K.A.2
  • 38
    • 0027508136 scopus 로고
    • The outbreak of equine influenza (H3N8) in the United Kingdom in 1989: Diagnostic use of an antigen capture ELISA
    • Livesay, G. J., O'Neill, T., Hannant, D., Yadav, M. P. & Mumford, J. A. 1993 The outbreak of equine influenza (H3N8) in the United Kingdom in 1989: diagnostic use of an antigen capture ELISA. Vet. Rec. 133, 515-519.
    • (1993) Vet. Rec. , vol.133 , pp. 515-519
    • Livesay, G.J.1    O'Neill, T.2    Hannant, D.3    Yadav, M.P.4    Mumford, J.A.5
  • 39
    • 66749140572 scopus 로고    scopus 로고
    • Improving the realism of deterministic multi-strain models: Implications for modelling influenza A
    • doi:10.1098/rsif.2008.0333
    • Minayev, P. & Ferguson, N. 2009a Improving the realism of deterministic multi-strain models: implications for modelling influenza A. J. R. Soc. Interface 6, 509-518. (doi:10.1098/rsif.2008.0333)
    • (2009) J. R. Soc. Interface , vol.6 , pp. 509-518
    • Minayev, P.1    Ferguson, N.2
  • 40
    • 70349766941 scopus 로고    scopus 로고
    • Incorporating demographic stochasticity into multi-strain epidemic models: Application to influenza A
    • doi:10.1098/rsif.2008.0467
    • Minayev, P. & Ferguson, N. 2009b Incorporating demographic stochasticity into multi-strain epidemic models: application to influenza A. J. R. Soc. Interface 6, 989-996. (doi:10.1098/rsif.2008.0467)
    • (2009) J. R. Soc. Interface , vol.6 , pp. 989-996
    • Minayev, P.1    Ferguson, N.2
  • 41
    • 0016770659 scopus 로고
    • The Tecumseh study of respiratory illness. IX. Occurrence of influenza in the community, 1966-1971
    • Monto, A. S. & Kioumehr, F. 1975 The Tecumseh study of respiratory illness. IX. Occurrence of influenza in the community, 1966-1971. Am. J. Epidemiol. 102, 553-563.
    • (1975) Am. J. Epidemiol. , vol.102 , pp. 553-563
    • Monto, A.S.1    Kioumehr, F.2
  • 42
    • 0033823715 scopus 로고    scopus 로고
    • Heterogeneity of influenza B virus strains in one epidemic season differentiated by monoclonal antibodies and nucleotide sequences
    • Nakagawa, N., Kubota, R., Maeda, A., Nakagawa, T. & Okuno, Y. 2000 Heterogeneity of influenza B virus strains in one epidemic season differentiated by monoclonal antibodies and nucleotide sequences. J. Clin. Microbiol. 38, 3467-3469.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 3467-3469
    • Nakagawa, N.1    Kubota, R.2    Maeda, A.3    Nakagawa, T.4    Okuno, Y.5
  • 43
    • 0035215456 scopus 로고    scopus 로고
    • Characterization of new epidemic strains of influenza B virus by using neutralizing monoclonal antibodies
    • doi:10.1002/jmv.2099
    • Nakagawa, N., Kubota, R., Morikawa, S., Nakagawa, T., Baba, K. & Okuno, Y. 2001a Characterization of new epidemic strains of influenza B virus by using neutralizing monoclonal antibodies. J. Med. Virol. 65, 745-750. (doi:10.1002/jmv.2099)
    • (2001) J. Med. Virol. , vol.65 , pp. 745-750
    • Nakagawa, N.1    Kubota, R.2    Morikawa, S.3    Nakagawa, T.4    Baba, K.5    Okuno, Y.6
  • 44
    • 0034840165 scopus 로고    scopus 로고
    • Antigenic variants with amino acid deletions clarify a neutralizing epitope specific for influenza B virus Victoria group strains
    • Nakagawa, N., Kubota, R., Nakagawa, T. & Okuno, Y. 2001b Antigenic variants with amino acid deletions clarify a neutralizing epitope specific for influenza B virus Victoria group strains. J. Gen. Virol. 82, 2169-2172.
    • (2001) J. Gen. Virol. , vol.82 , pp. 2169-2172
    • Nakagawa, N.1    Kubota, R.2    Nakagawa, T.3    Okuno, Y.4
  • 45
    • 0036701636 scopus 로고    scopus 로고
    • Emergence of an influenza B virus with antigenic change
    • doi:10.1128/JCM.40.8.3068-3070.2002
    • Nakagawa, N., Nukuzuma, S., Haratome, S., Go, S., Nakagawa, T. & Hayashi, K. 2002 Emergence of an influenza B virus with antigenic change. J. Clin. Microbiol. 40, 3068-3070. (doi:10.1128/JCM.40.8.3068-3070.2002)
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 3068-3070
    • Nakagawa, N.1    Nukuzuma, S.2    Haratome, S.3    Go, S.4    Nakagawa, T.5    Hayashi, K.6
  • 46
    • 0021054646 scopus 로고
    • Identification of the binding sites to monoclonal antibodies on A/USSR/90/77 (H1N1) hemagglutinin and their involvement in antigenic drift in H1N1 influenza viruses
    • doi:10.1016/0042-6822(83)90538-X
    • Nakajima, S., Nakajima, K. & Kendal, A. P. 1983 Identification of the binding sites to monoclonal antibodies on A/USSR/90/77 (H1N1) hemagglutinin and their involvement in antigenic drift in H1N1 influenza viruses. Virology 131, 116-127. (doi:10.1016/0042-6822(83)90538-X)
    • (1983) Virology , vol.131 , pp. 116-127
    • Nakajima, S.1    Nakajima, K.2    Kendal, A.P.3
  • 47
    • 0031688215 scopus 로고    scopus 로고
    • Evolutionary characteristics of influenza B virus since its first isolation in 1940: Dynamic circulation of deletion and insertion mechanism
    • doi:10.1007/s007050050399
    • Nerome, R., Hiromoto, Y., Sugita, S., Tanabe, N., Ishida, M., Matsumoto, M., Lindstrom, E., Takahashi, T. & Nerome, K. 1998 Evolutionary characteristics of influenza B virus since its first isolation in 1940: dynamic circulation of deletion and insertion mechanism. Arch. Virol. 143, 1569-1583. (doi:10.1007/s007050050399)
    • (1998) Arch. Virol. , vol.143 , pp. 1569-1583
    • Nerome, R.1    Hiromoto, Y.2    Sugita, S.3    Tanabe, N.4    Ishida, M.5    Matsumoto, M.6    Lindstrom, E.7    Takahashi, T.8    Nerome, K.9
  • 48
    • 33645235646 scopus 로고    scopus 로고
    • Comparison of the mutation rates of human influenza A and B viruses
    • doi:10.1128/JVI.80.7.3675-3678.2006
    • Nobusawa, E. & Sato, K. 2006 Comparison of the mutation rates of human influenza A and B viruses. J. Virol. 80, 3675-3678. (doi:10.1128/JVI.80.7. 3675-3678.2006)
    • (2006) J. Virol. , vol.80 , pp. 3675-3678
    • Nobusawa, E.1    Sato, K.2
  • 49
    • 0032809101 scopus 로고    scopus 로고
    • Cocirculation of two distinct lineages of equine influenza virus subtype H3N8
    • Oxburgh, L. & Klingeborn, B. 1999 Cocirculation of two distinct lineages of equine influenza virus subtype H3N8. J. Clin. Microbiol. 37, 3005-3009.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 3005-3009
    • Oxburgh, L.1    Klingeborn, B.2
  • 50
    • 0027970258 scopus 로고
    • Evolution of H3N8 equine influenza virus from 1963 to 1991
    • doi:10.1016/0168-1702(94)90097-3
    • Oxburgh, L., Berg, M., Klingeborn, B., Emmoth, E. & Linné, T. 1994 Evolution of H3N8 equine influenza virus from 1963 to 1991. Virus Res. 34, 153-165. (doi:10.1016/0168-1702(94)90097-3)
    • (1994) Virus Res. , vol.34 , pp. 153-165
    • Oxburgh, L.1    Berg, M.2    Klingeborn, B.3    Emmoth, E.4    Linné, T.5
  • 51
    • 0031934427 scopus 로고    scopus 로고
    • Identification of two antigenically and genetically distinct lineages of H3N8 equine influenza virus in Sweden
    • doi:10.1017/S0950268897008315
    • Oxburgh, L., Akerblom, L., Fridberger, T., Klingeborn, B. & Linné, L. 1998 Identification of two antigenically and genetically distinct lineages of H3N8 equine influenza virus in Sweden. Epidemiol. Infect. 120, 61-70. (doi:10.1017/S0950268897008315)
    • (1998) Epidemiol. Infect. , vol.120 , pp. 61-70
    • Oxburgh, L.1    Akerblom, L.2    Fridberger, T.3    Klingeborn, B.4    Linné, L.5
  • 52
    • 70350599175 scopus 로고    scopus 로고
    • Quantifying the impact of immune escape on transmission dynamics of influenza
    • doi:10.1126/science.1175980
    • Park, A., Daly, J. M., Lewis, N. S., Smith, D. J., Wood, J. L. N. & Grenfell, B. T. 2009 Quantifying the impact of immune escape on transmission dynamics of influenza. Science 326, 726-728. (doi:10.1126/science.1175980)
    • (2009) Science , vol.326 , pp. 726-728
    • Park, A.1    Daly, J.M.2    Lewis, N.S.3    Smith, D.J.4    Wood, J.L.N.5    Grenfell, B.T.6
  • 53
    • 0037197919 scopus 로고    scopus 로고
    • Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus
    • doi:10.1073/pnas.082110799
    • Plotkin, J. B., Dushoff, J. & Levin, S. A. 2002 Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus. Proc. Natl Acad. Sci. USA 99, 6263-6268. (doi:10.1073/pnas.082110799)
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 6263-6268
    • Plotkin, J.B.1    Dushoff, J.2    Levin, S.A.3
  • 54
    • 34250673625 scopus 로고    scopus 로고
    • The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types
    • doi:10.1073/pnas.0702154104
    • Recker, M., Pybus, O. G., Nee, S. & Gupta, S. 2007 The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types. Proc. Natl Acad. Sci. USA 104, 7711-7716. (doi:10.1073/pnas.0702154104)
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 7711-7716
    • Recker, M.1    Pybus, O.G.2    Nee, S.3    Gupta, S.4
  • 55
    • 0026757075 scopus 로고
    • Antigenic and genetic characterization of the haemagglutinins of recent cocirculating strains of influenza B virus
    • doi:10.1099/0022-1317-73-10-2737
    • Rota, P. A., Hemphill, M. L., Whistler, T., Regnery, H. L. & Kendal, A. P. 1992 Antigenic and genetic characterization of the haemagglutinins of recent cocirculating strains of influenza B virus. J. Gen. Virol. 73, 2737-2742. (doi:10.1099/0022-1317-73-10-2737)
    • (1992) J. Gen. Virol. , vol.73 , pp. 2737-2742
    • Rota, P.A.1    Hemphill, M.L.2    Whistler, T.3    Regnery, H.L.4    Kendal, A.P.5
  • 56
    • 85088339495 scopus 로고    scopus 로고
    • Absolute humidity and the seasonal onset of influenza in the continental US
    • Shaman, J., Pitzer, V., Cecile, V., Marc, L. & Bryan, G. 2009 Absolute humidity and the seasonal onset of influenza in the continental US. PLoS Curr. Influenza. See http://knol.google.com/k/plos/plos-currents-influenza/ 28qm4w0q65e4w/1.
    • (2009) PLoS Curr. Influenza
    • Shaman, J.1    Pitzer, V.2    Cecile, V.3    Marc, L.4    Bryan, G.5
  • 57
    • 0032710838 scopus 로고    scopus 로고
    • Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection
    • Shankarappa, R. et al. 1999 Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection. J. Virol. 73, 10 489-10 502.
    • (1999) J. Virol. , vol.73 , pp. 10489-10502
    • Shankarappa, R.1
  • 58
    • 34547553697 scopus 로고    scopus 로고
    • Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution
    • doi:10.1073/pnas.0701396104
    • Shih, A. C., Hsiao, T., Ho, M.-S. & Li, W.-H. 2007 Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution. Proc. Natl Acad. Sci. USA 104, 6283-6288. (doi:10.1073/pnas. 0701396104)
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 6283-6288
    • Shih, A.C.1    Hsiao, T.2    Ho, M.-S.3    Li, W.-H.4
  • 60
    • 55149123957 scopus 로고    scopus 로고
    • Positive selection operates continuously on hemagglutinin during evolution of H3N2 human influenza A virus
    • doi:10.1016/j.gene.2008.09.012
    • Suzuki, Y. 2008 Positive selection operates continuously on hemagglutinin during evolution of H3N2 human influenza A virus. Gene 427, 111-116. (doi:10.1016/j.gene.2008.09.012)
    • (2008) Gene , vol.427 , pp. 111-116
    • Suzuki, Y.1
  • 61
    • 23844549566 scopus 로고    scopus 로고
    • A minimal stochastic model for influenza evolution
    • P07008
    • Tria, F., Lässig, M., Peliti, L. & Franz, S. 2005 A minimal stochastic model for influenza evolution. J. Stat. Mech. P07008, 1-11.
    • (2005) J. Stat. Mech. , pp. 1-11
    • Tria, F.1    Lässig, M.2    Peliti, L.3    Franz, S.4
  • 62
    • 77956564282 scopus 로고    scopus 로고
    • Quantifying the transmissibility of human influenza and its seasonal variation in temperate regions
    • Truscott, J., Fraser, C., Hinsley, W., Cauchemez, S., Donnelly, C., Ghani, A. & Ferguson, N. 2009 Quantifying the transmissibility of human influenza and its seasonal variation in temperate regions. PLoS Curr. Influenza. See http://knol.google.com/k/plos/plos-currents-influenza/28qm4w0q65e4w/1.
    • (2009) PLoS Curr. Influenza.
    • Truscott, J.1    Fraser, C.2    Hinsley, W.3    Cauchemez, S.4    Donnelly, C.5    Ghani, A.6    Ferguson, N.7
  • 63
    • 33845895750 scopus 로고    scopus 로고
    • Influenza escapes immunity along neutral networks
    • doi:10.1126/science.1137300
    • van Nimwegen, E. 2006 Influenza escapes immunity along neutral networks. Science 314, 1884-1886. (doi:10.1126/science.1137300)
    • (2006) Science , vol.314 , pp. 1884-1886
    • Van Nimwegen, E.1
  • 64
    • 0005960874 scopus 로고
    • A new influenza virus associated with equine respiratory disease
    • Waddell, G. H., Teigland, M. B. & Siegel, M. M. 1963 A new influenza virus associated with equine respiratory disease. J. Am. Vet. Med. Assoc. 143, 587-590.
    • (1963) J. Am. Vet. Med. Assoc. , vol.143 , pp. 587-590
    • Waddell, G.H.1    Teigland, M.B.2    Siegel, M.M.3
  • 65
    • 0027692393 scopus 로고
    • Are equine 1 influenza viruses still present in horses?
    • Webster, R. G. 1993 Are equine 1 influenza viruses still present in horses? Equine Vet. J. 25, 537-538.
    • (1993) Equine Vet. J. , vol.25 , pp. 537-538
    • Webster, R.G.1
  • 66
    • 0018862275 scopus 로고
    • Determination of the number of nonoverlapping antigenic areas on Hong Kong (H3N2) influenza virus hemagglutinin with monoclonal antibodies and the selection of variants with potential epidemiological significance
    • doi:10.1016/0042-6822(80)90372-4
    • Webster, R. G. & Laver, W. G. 1980 Determination of the number of nonoverlapping antigenic areas on Hong Kong (H3N2) influenza virus hemagglutinin with monoclonal antibodies and the selection of variants with potential epidemiological significance. Virology 104, 139-148. (doi:10.1016/0042-6822(80) 90372-4)
    • (1980) Virology , vol.104 , pp. 139-148
    • Webster, R.G.1    Laver, W.G.2
  • 67
    • 0019432165 scopus 로고
    • Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation
    • doi:10.1038/289373a0
    • Wiley, D. C., Wilson, I. A. & Skehel, J. J. 1981 Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation. Nature 289, 373-378. (doi:10.1038/289373a0)
    • (1981) Nature , vol.289 , pp. 373-378
    • Wiley, D.C.1    Wilson, I.A.2    Skehel, J.J.3
  • 68
    • 0025246369 scopus 로고
    • Structural basis of immune recognition of influenza virus hemagglutinin
    • doi:10.1146/annurev.iy.08.040190.003513
    • Wilson, I. A. & Cox, N. J. 1990 Structural basis of immune recognition of influenza virus hemagglutinin. Annu. Rev. Immunol. 8, 737-787. (doi:10.1146/annurev.iy.08.040190.003513)
    • (1990) Annu. Rev. Immunol. , vol.8 , pp. 737-787
    • Wilson, I.A.1    Cox, N.J.2
  • 69
    • 34248231694 scopus 로고    scopus 로고
    • Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus
    • doi:10.1186/1745-6150-1-34
    • Wolf, Y. I., Viboud, C., Holmes, E. C., Koonin, E. V. & Lipman, D. J. 2006 Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus. Biol. Direct 1, 34. (doi:10.1186/1745-6150-1-34)
    • (2006) Biol. Direct , vol.1 , pp. 34
    • Wolf, Y.I.1    Viboud, C.2    Holmes, E.C.3    Koonin, E.V.4    Lipman, D.J.5
  • 70
    • 18444372056 scopus 로고    scopus 로고
    • Semiparametric estimation of the duration of immunity from infectious disease time-series: Influenza as a case study
    • doi:10.1111/j.1467-9876.2005.05383.x
    • Xia, Y., Gog, J. R. & Grenfell, B. T. 2005 Semiparametric estimation of the duration of immunity from infectious disease time-series: influenza as a case study. Appl. Stat. 54, 659-672. (doi:10.1111/j.1467-9876.2005.05383.x)
    • (2005) Appl. Stat. , vol.54 , pp. 659-672
    • Xia, Y.1    Gog, J.R.2    Grenfell, B.T.3


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