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Volumn 104, Issue 3, 2013, Pages 203-214

Complete genome sequence and transcription profiles of the rock bream iridovirus RBIV-C1

Author keywords

Comparative genome; Iridovirus; Megalocytivirus; Oplegnathus fasciatus

Indexed keywords

TRANSCRIPTOME;

EID: 84879344628     PISSN: 01775103     EISSN: 16161580     Source Type: Journal    
DOI: 10.3354/dao02587     Document Type: Article
Times cited : (34)

References (43)
  • 1
    • 33750605771 scopus 로고    scopus 로고
    • Identification and characterization of a novel gene encoding an RGD-containing protein in large yellow croaker iridovirus
    • DOI 10.1016/j.virol.2006.07.004, PII S0042682206004417
    • Ao J, Chen X (2006) Identification and characterization of a novel gene encoding an RGD-containing protein in large yellow croaker iridovirus. Virology 355: 213-222 (Pubitemid 44692771)
    • (2006) Virology , vol.355 , Issue.2 , pp. 213-222
    • Ao, J.1    Chen, X.2
  • 2
    • 1042304214 scopus 로고    scopus 로고
    • JDotter: A Java interface to multiple dotplots generated by dotter
    • DOI 10.1093/bioinformatics/btg406
    • Brodie R, Roper RL, Upton C (2004) JDotter: a Java interface to multiple dotplots generated by dotter. Bioinformatics 20: 279-281 (Pubitemid 38195689)
    • (2004) Bioinformatics , vol.20 , Issue.2 , pp. 279-281
    • Brodie, R.1    Roper, R.L.2    Upton, C.3
  • 3
    • 33646235956 scopus 로고    scopus 로고
    • Family iridoviridae
    • In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Eighth Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, CA
    • Chinchar VG, Essbauer JG, He JG, Hyatt A, Miyazaki T, Seligy V, Williams T (2005) Family Iridoviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy. Eighth Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, CA, p 145-162
    • (2005) Virus Taxonomy , pp. 145-162
    • Chinchar, V.G.1    Essbauer, J.G.2    He, J.G.3    Hyatt, A.4    Miyazaki, T.5    Seligy, V.6    Williams, T.7
  • 4
    • 0032286799 scopus 로고    scopus 로고
    • Isolation and characterization of a pathogenic iridovirus from cultured grouper (epinephelus sp.) in taiwan
    • Chou HY, Hsu CC, Peng TY (1998) Isolation and characterization of a pathogenic iridovirus from cultured grouper (Epinephelus sp.) in Taiwan. Fish Pathol 33: 201-206
    • (1998) Fish Pathol , vol.33 , pp. 201-206
    • Chou, H.Y.1    Hsu, C.C.2    Peng, T.Y.3
  • 8
    • 33846848887 scopus 로고    scopus 로고
    • Comparative genomic analysis of the family iridoviridae: Re-annotating and defining the core set of iridovirus genes
    • Eaton HE, Metcalf J, Penny E, Tcherepanov V, Upton C, Brunetti CR (2007) Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes. Virol J 4: 11
    • (2007) Virol J , vol.4 , pp. 11
    • Eaton, H.E.1    Metcalf, J.2    Penny, E.3    Tcherepanov, V.4    Upton, C.5    Brunetti, C.R.6
  • 9
    • 33646231251 scopus 로고    scopus 로고
    • The molecular epidemiology of iridovirus in murray cod (maccullochella peehi peehi) and dwarf gourami (colisa lalia) from distant biogeographical regions suggests a link between trade in ornamental fish and emerging iridoviral diseases
    • Go J, Lancaster M, Deece K, Dhungyel O, Whittington R (2006) The molecular epidemiology of iridovirus in Murray cod (Maccullochella peehi peehi) and dwarf gourami (Colisa lalia) from distant biogeographical regions suggests a link between trade in ornamental fish and emerging iridoviral diseases. Mol Cell Probes 20: 212-222
    • (2006) Mol Cell Probes , vol.20 , pp. 212-222
    • Go, J.1    Lancaster, M.2    Deece, K.3    Dhungyel, O.4    Whittington, R.5
  • 10
    • 17644382303 scopus 로고    scopus 로고
    • Enzymatic processing of replication and recombination intermediates by the vaccinia virus DNA polymerase
    • DOI 10.1093/nar/gki525
    • Hamilton MD, Evans DH (2005) Enzymatic processing of replication and recombination intermediates by the vaccinia virus DNA polymerase. Nucleic Acids Res 33: 2259-2268 (Pubitemid 41439894)
    • (2005) Nucleic Acids Research , vol.33 , Issue.7 , pp. 2259-2268
    • Hamilton, M.D.1    Evans, D.H.2
  • 11
    • 0035814498 scopus 로고    scopus 로고
    • Complete genome analysis of the mandarin fish infectious spleen and kidney necrosis iridovirus
    • DOI 10.1006/viro.2001.1208
    • He JG, Deng M, Weng SP, Li Z and others (2001) Complete genome analysis of the mandarin fish infectious spleen and kidney necrosis iridovirus. Virology 291: 126-139 (Pubitemid 34062206)
    • (2001) Virology , vol.291 , Issue.1 , pp. 126-139
    • He, J.G.1    Deng, M.2    Weng, S.P.3    Li, Z.4    Zhou, S.Y.5    Long, Q.X.6    Wang, X.Z.7    Chan, S.-M.8
  • 13
    • 66749084358 scopus 로고    scopus 로고
    • Complete sequence determination of a novel reptile irido - Virus isolated from soft-shelled turtle and evolutionary analysis of iridoviridae
    • Others
    • Huang Y, Huang X, Liu H, Gong J and others (2009) Complete sequence determination of a novel reptile irido - virus isolated from soft-shelled turtle and evolutionary analysis of Iridoviridae. BMC Genomics 10: 224
    • (2009) BMC Genomics , vol.10 , pp. 224
    • Huang, Y.1    Huang, X.2    Liu, H.3    Gong, J.4
  • 14
    • 33645809335 scopus 로고    scopus 로고
    • Transcription elongation factor s-ii is required for definitive hematopoiesis
    • Others
    • Ito T, Arimitsu N, Takeuchi M, Kawamura N and others (2006) Transcription elongation factor S-II is required for definitive hematopoiesis. Mol Cell Biol 26: 3194-3203
    • (2006) Mol Cell Biol , vol.26 , pp. 3194-3203
    • Ito, T.1    Arimitsu, N.2    Takeuchi, M.3    Kawamura, N.4
  • 15
    • 0035919712 scopus 로고    scopus 로고
    • Analysis of the first complete DNA sequence of an invertebrate iridovirus: Coding strategy of the genome of Chilo iridescent virus
    • DOI 10.1006/viro.2001.0963
    • Jakob NJ, Muller K, Bahr U, Dara G (2001) Analysis of the first complete DNA sequence of an invertebrate iri- dovirus: coding strategy of the genome of Chilo iridescent virus. Virology 286: 182-196 (Pubitemid 32675478)
    • (2001) Virology , vol.286 , Issue.1 , pp. 182-196
    • Jakob, N.J.1    Muller, K.2    Bahr, U.3    Darai, G.4
  • 17
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • DOI 10.1093/bib/bbn013, Special Issue: Critical Technologies for Bioinformatics
    • Katoh K, Toh H (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9: 286-298 (Pubitemid 351890825)
    • (2008) Briefings in Bioinformatics , vol.9 , Issue.4 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 19
    • 84860251983 scopus 로고    scopus 로고
    • Megalocytiviruses
    • Kurita J, Nakajima K (2012) Megalocytiviruses. Viruses 4: 521-538
    • (2012) Viruses , vol.4 , pp. 521-538
    • Kurita, J.1    Nakajima, K.2
  • 20
    • 84989185931 scopus 로고    scopus 로고
    • Complete genome sequencing of red sea bream iridovirus (rsiv
    • Kurita J, Nakajima K, Hirono I, Aoki T (2002) Complete genome sequencing of red sea bream iridovirus (RSIV). Fish Sci 68: 1113-1115
    • (2002) Fish Sci , vol.68 , pp. 1113-1115
    • Kurita, J.1    Nakajima, K.2    Hirono, I.3    Aoki, T.4
  • 22
    • 84864493235 scopus 로고    scopus 로고
    • Sequencing and analysis of the complete genome of rana grylio virus (rgv
    • Lei XY, Ou T, Zhu RL, Zhang QY (2012) Sequencing and analysis of the complete genome of Rana grylio virus (RGV). Arch Virol 157: 1559-1564
    • (2012) Arch Virol , vol.157 , pp. 1559-1564
    • Lei, X.Y.1    Ou, T.2    Zhu, R.L.3    Zhang, Q.Y.4
  • 23
    • 23244440498 scopus 로고    scopus 로고
    • Complete genome sequence analysis of an iridovirus isolated from the orange-spotted grouper, Epinephelus coioides
    • DOI 10.1016/j.virol.2005.05.021, PII S0042682205003016
    • Lü L, Zhou SY, Chen C, Weng SP, Chan SM, He JG (2005) Complete genome sequence analysis of an iridovirus isolated from the orange-spotted grouper, Epinephelus coioides. Virology 339: 81-100 (Pubitemid 41096066)
    • (2005) Virology , vol.339 , Issue.1 , pp. 81-100
    • Lu, L.1    Zhou, S.Y.2    Chen, C.3    Weng, S.P.4    Chan, S.-M.5    He, J.G.6
  • 24
    • 29744465301 scopus 로고    scopus 로고
    • Transcription program of red sea bream iridovirus as revealed by DNA microarrays
    • DOI 10.1128/JVI.79.24.15151-15164.2005
    • Lua DT, Yasuike M, Hirono I, Aoki T (2005) Transcription program of red sea bream iridovirus as revealed by DNA microarrays. J Virol 79: 15151-15164 (Pubitemid 43032298)
    • (2005) Journal of Virology , vol.79 , Issue.24 , pp. 15151-15164
    • Lua, D.T.1    Yasuike, M.2    Hirono, I.3    Aoki, T.4
  • 25
    • 33845648557 scopus 로고    scopus 로고
    • Bacterial contingency loci: The role of simple sequence DNA repeats in bacterial adaptation
    • DOI 10.1146/annurev.genet.40.110405.090442
    • Moxon R, Bayliss C, Hood D (2006) Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation. Annu Rev Genet 40: 307-333 (Pubitemid 44956788)
    • (2006) Annual Review of Genetics , vol.40 , pp. 307-333
    • Moxon, R.1    Bayliss, C.2    Hood, D.3
  • 26
    • 34249801792 scopus 로고    scopus 로고
    • Purification of host cell enzymes involved in adeno-associated virus DNA replication
    • DOI 10.1128/JVI.02651-06
    • Nash K, Chen WJ, McDonald WF, Zhou XH, Muzyczka N (2007) Purification of host cell enzymes involved in adeno-associated virus DNA replication. J Virol 81: 5777-5787 (Pubitemid 46847016)
    • (2007) Journal of Virology , vol.81 , Issue.11 , pp. 5777-5787
    • Nash, K.1    Chen, W.2    McDonald, W.F.3    Zhou, X.4    Muzyczka, N.5
  • 28
    • 77954547417 scopus 로고    scopus 로고
    • Complete genome sequence of a megalocytivirus (family iridoviridae) associated with turbot mortality in china
    • Shi CY, Jia KT, Yang B, Huang J (2010) Complete genome sequence of a Megalocytivirus (family Iridoviridae) associated with turbot mortality in China. Virol J 7: 159
    • (2010) Virol J , vol.7 , pp. 159
    • Shi, C.Y.1    Jia, K.T.2    Yang, B.3    Huang, J.4
  • 29
    • 66249138866 scopus 로고    scopus 로고
    • Phenotypic diversity of infectious red sea bream iridovirus isolates from cultured fish in japan
    • Shinmoto H, Taniguchi K, Ikawa T, Kawai K, Oshima S (2009) Phenotypic diversity of infectious red sea bream iridovirus isolates from cultured fish in Japan. Appl En - viron Microbiol 75: 3535-3541
    • (2009) Appl En - viron Microbiol , vol.75 , pp. 3535-3541
    • Shinmoto, H.1    Taniguchi, K.2    Ikawa, T.3    Kawai, K.4    Oshima, S.5
  • 30
    • 7644238614 scopus 로고    scopus 로고
    • Functional genomics analysis of Singapore grouper iridovirus: Complete sequence determination and proteomic analysis
    • DOI 10.1128/JVI.78.22.12576-12590.2004
    • Song WJ, Oin QW, Qiu J, Huang CH, Wang F, Hew CL (2004) Functional genomics analysis of Singapore grouper iridovirus: complete sequence determination and proteomic analysis. J Virol 78: 12576-12590 (Pubitemid 39458776)
    • (2004) Journal of Virology , vol.78 , Issue.22 , pp. 12576-12590
    • Wen, J.S.1    Qi, W.Q.2    Qiu, J.3    Can, H.H.4    Wang, F.5    Choy, L.H.6
  • 31
    • 2542454676 scopus 로고    scopus 로고
    • Comparative genomic analyses of frog virus 3, type species of the genus Ranavirus (family Iridoviridae)
    • DOI 10.1016/j.virol.2004.02.019, PII S0042682204001503
    • TanWGH, Barkman TJ, Chinchar VG, Essani K (2004) Comparative genomic analyses of frog virus 3, type species of the genus Ranavirus (family Iridoviridae). Virology 323: 70-84 (Pubitemid 38681021)
    • (2004) Virology , vol.323 , Issue.1 , pp. 70-84
    • Tan, W.G.H.1    Barkman, T.J.2    Chinchar, V.G.3    Essani, K.4
  • 32
    • 44949090369 scopus 로고    scopus 로고
    • Whole-genome transcriptional profiles of a novel marine fish iridovirus, Singapore grouper iridovirus (SGIV) in virus-infected grouper spleen cell cultures and in orange-spotted grouper, Epinephulus coioides
    • DOI 10.1016/j.virol.2008.04.011, PII S0042682208002158
    • Teng Y, Hou ZW, Gong J, Liu H and others (2008) Wholegenome transcriptional profiles of a novel marine fish iridovirus, Singapore grouper iridovirus (SGIV) in virusinfected grouper spleen cell cultures and in orangespotted grouper, Epinephulus coioides. Virology 377: 39-48 (Pubitemid 351802274)
    • (2008) Virology , vol.377 , Issue.1 , pp. 39-48
    • Teng, Y.1    Hou, Z.2    Gong, J.3    Liu, H.4    Xie, X.5    Zhang, L.6    Chen, X.7    Qin, Q.W.8
  • 33
    • 0031005423 scopus 로고    scopus 로고
    • The complete DNA sequence of lymphocystis disease virus
    • DOI 10.1006/viro.1997.8456
    • Tidona CA, Darai G (1997) The complete DNA sequence of lymphocystis disease virus. Virology 230: 207-216 (Pubitemid 27211851)
    • (1997) Virology , vol.230 , Issue.2 , pp. 207-216
    • Tidona, C.A.1    Darai, G.2
  • 34
    • 13444270445 scopus 로고    scopus 로고
    • Complete genome sequence of the grouper irido - Virus and comparison of genomic organization with those of other iridoviruses
    • Tsai CT, Ting JW, Wu MH, Wu MF, Guo IC, Chang CY (2005) Complete genome sequence of the grouper irido - virus and comparison of genomic organization with those of other iridoviruses. J Virol 79: 2010-2023
    • (2005) J Virol , vol.79 , pp. 2010-2023
    • Tsai, C.T.1    Ting, J.W.2    Wu, M.H.3    Wu, M.F.4    Guo, I.C.5    Chang, C.Y.6
  • 35
    • 0037352625 scopus 로고    scopus 로고
    • Studies on epizootic iridovirus infection among red sea bream, Pagrus major (Temminck & Schlegel), cultured in Taiwan
    • DOI 10.1046/j.1365-2761.2003.00441.x
    • Wang CS, Shih HH, Ku CC, Chen SN (2003) Studies on epizootic iridovirus infection among red sea bream, Pagrus major (Temminck & Schlegel), cultured in Taiwan. J Fish Dis 26: 127-133 (Pubitemid 36380497)
    • (2003) Journal of Fish Diseases , vol.26 , Issue.3 , pp. 127-133
    • Wang, C.S.1    Shih, H.H.2    Ku, C.C.3    Chen, S.N.4
  • 36
    • 42449114461 scopus 로고    scopus 로고
    • Infectious spleen and kidney necrosis virus orf48r functions as a new viral vascular endothelial growth factor
    • and others
    • Wang ZL, Xu XP, He BL, Weng SP and others (2008) Infectious spleen and kidney necrosis virus ORF48R functions as a new viral vascular endothelial growth factor. J Virol 82: 4371-4383
    • (2008) J Virol , vol.82 , pp. 4371-4383
    • Wang, Z.L.1    Xu, X.P.2    He, B.L.3    Weng, S.P.4
  • 37
    • 76049111763 scopus 로고    scopus 로고
    • Iridovirus infections in finfish - Critical review with emphasis on ranaviruses
    • Whittington RJ, Becker JA, Dennis MM (2010) Iridovirus infections in finfish - critical review with emphasis on ranaviruses. J Fish Dis 33: 95-122
    • (2010) J Fish Dis , vol.33 , pp. 95-122
    • Whittington, R.J.1    Becker, J.A.2    Dennis, M.M.3
  • 38
  • 39
    • 33846010172 scopus 로고    scopus 로고
    • RING finger proteins of infectious spleen and kidney necrosis virus (ISKNV) function as ubiquitin ligase enzymes
    • DOI 10.1016/j.virusres.2006.09.003, PII S0168170206002759
    • Xie J, Zhu J, Yang H, Weng S and others (2007) RING finger proteins of infectious spleen and kidney necrosis virus (ISKNV) function as ubiquitin ligase enzymes. Virus Res 123: 170-177 (Pubitemid 46054339)
    • (2007) Virus Research , vol.123 , Issue.2 , pp. 170-177
    • Xie, J.1    Zhu, J.2    Yang, H.3    Weng, S.4    Chen, C.5    Chen, H.6    Xie, Q.7    Li, M.8    He, J.9
  • 40
    • 84858150936 scopus 로고    scopus 로고
    • Characterization of a megalocytivirus from cultured rock bream, oplegnathus fasciatus (temminck & schlege), in china
    • Zhang M, Xiao ZZ, Hu YH, Sun L (2012) Characterization of a megalocytivirus from cultured rock bream, Oplegnathus fasciatus (Temminck & Schlege), in China. Aqua - cult Res 43: 556-564
    • (2012) Aqua - cult Res , vol.43 , pp. 556-564
    • Zhang, M.1    Xiao, Z.Z.2    Hu, Y.H.3    Sun, L.4
  • 41
    • 2942635075 scopus 로고    scopus 로고
    • Complete genome sequence of lymphocystis disease virus isolated from China
    • DOI 10.1128/JVI.78.13.6982-6994.2004
    • Zhang QY, Xiao F, Xie H, Li ZQ, Gui HF (2004) Complete genome sequence of lymphocystis disease virus isolated from China. J Virol 78: 6982-6994 (Pubitemid 38781537)
    • (2004) Journal of Virology , vol.78 , Issue.13 , pp. 6982-6994
    • Zhang, Q.-Y.1    Xiao, F.2    Xie, J.3    Li, Z.-Q.4    Gui, J.-F.5
  • 42
    • 79551617102 scopus 로고    scopus 로고
    • Evaluation of housekeeping genes as references for quantitative real time rt-pcr analysis of gene expression in japanese flounder (paralichthys olivaceus
    • Zheng WJ, Sun L (2011) Evaluation of housekeeping genes as references for quantitative real time RT-PCR analysis of gene expression in Japanese flounder (Paralichthys olivaceus). Fish Shellfish Immunol 30: 638-645
    • (2011) Fish Shellfish Immunol , vol.30 , pp. 638-645
    • Zheng, W.J.1    Sun, L.2
  • 43
    • 79956259568 scopus 로고    scopus 로고
    • Proteomic analysis of singapore grouper iridovirus envelope proteins and characterization of a novel envelope protein vp088
    • and others
    • Zhou S, Wan QJ, Huang YH, Huang XH and others (2011) Proteomic analysis of Singapore grouper iridovirus envelope proteins and characterization of a novel envelope protein VP088. Proteomics 11: 2236-2248
    • (2011) Proteomics , vol.11 , pp. 2236-2248
    • Zhou, S.1    Wan, Q.J.2    Huang, Y.H.3    Huang, X.H.4


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