메뉴 건너뛰기




Volumn 316, Issue 1, 2003, Pages 90-103

Genomic sequence of a ranavirus (family Iridoviridae) associated with salamander mortalities in North America

Author keywords

Ambystoma tigrinum virus; Amphibian; Dot plot; Iridovirus; Regina ranavirus

Indexed keywords

PALINDROMIC DNA;

EID: 0242352467     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virol.2003.08.001     Document Type: Article
Times cited : (127)

References (41)
  • 1
    • 0018345486 scopus 로고
    • The nucleotide sequences at the termini of adenovirus 2 DNA
    • Arrand J., Roberts R.J. The nucleotide sequences at the termini of adenovirus 2 DNA. J. Mol. Biol. 128:1979;577-594.
    • (1979) J. Mol. Biol. , vol.128 , pp. 577-594
    • Arrand, J.1    Roberts, R.J.2
  • 2
    • 0025815146 scopus 로고
    • Vaccinia virus-encoded eIF-2α homolog abrogates the anti-viral effect of interferon
    • Beatie E., Tartaglia J., Paoletti E. Vaccinia virus-encoded eIF-2α homolog abrogates the anti-viral effect of interferon. Virology. 183:1991;419-422.
    • (1991) Virology , vol.183 , pp. 419-422
    • Beatie, E.1    Tartaglia, J.2    Paoletti, E.3
  • 3
    • 0035875343 scopus 로고    scopus 로고
    • GeneMarkS: A self-training method for the prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    • Besemer J., Lomsadze A., Borodovsky M. GeneMarkS a self-training method for the prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions . Nucleic Acids Res. 29:2001;2606-2618.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2606-2618
    • Besemer, J.1    Lomsadze, A.2    Borodovsky, M.3
  • 4
    • 0033158443 scopus 로고    scopus 로고
    • Pathology, isolation and molecular characterization of an iridovirus from tiger salamanders in Saskatchewan
    • Bollinger T.K., Mao J., Schock D., Brigham R.M., Chinchar V.G. Pathology, isolation and molecular characterization of an iridovirus from tiger salamanders in Saskatchewan. J. Wildlife Dis. 35:1999;413-429.
    • (1999) J. Wildlife Dis. , vol.35 , pp. 413-429
    • Bollinger, T.K.1    Mao, J.2    Schock, D.3    Brigham, R.M.4    Chinchar, V.G.5
  • 5
    • 0036023965 scopus 로고    scopus 로고
    • CARD games in apoptosis and immunity
    • Bouchier-Hayes L., Martin S.J. CARD games in apoptosis and immunity. EMBO Rep. 3:2002;616-621.
    • (2002) EMBO Rep. , vol.3 , pp. 616-621
    • Bouchier-Hayes, L.1    Martin, S.J.2
  • 6
    • 0027163011 scopus 로고
    • Recombinant vaccinia virus K3L gene product prevents activation of double-stranded RNA-dependent, initiation factor 2 alpha-specific protein kinase
    • Carroll K., Elroy-Stein O., Moss B., Jagus R. Recombinant vaccinia virus K3L gene product prevents activation of double-stranded RNA-dependent, initiation factor 2 alpha-specific protein kinase. J. Biol. Chem. 268:1993;12837-12842.
    • (1993) J. Biol. Chem. , vol.268 , pp. 12837-12842
    • Carroll, K.1    Elroy-Stein, O.2    Moss, B.3    Jagus, R.4
  • 7
    • 0022512001 scopus 로고
    • Temperature-sensitive mutants of frog virus 3: Biochemical and genetic characterization
    • Chinchar V.G., Granoff A. Temperature-sensitive mutants of frog virus 3 biochemical and genetic characterization . J. Virol. 58:1986;192-202.
    • (1986) J. Virol. , vol.58 , pp. 192-202
    • Chinchar, V.G.1    Granoff, A.2
  • 8
    • 0036008606 scopus 로고    scopus 로고
    • Ranaviruses (family Iridoviridae): Emerging cold-blooded killers
    • Chinchar V.G. Ranaviruses (family Iridoviridae) emerging cold-blooded killers . Arch. Virol. 147:2002;447-470.
    • (2002) Arch. Virol. , vol.147 , pp. 447-470
    • Chinchar, V.G.1
  • 9
    • 0037336732 scopus 로고    scopus 로고
    • Global amphibian declines: Sorting the hypotheses
    • Collins J.P., Storfer A. Global amphibian declines sorting the hypotheses . Diversity and Distributions. 9:2003;89-98.
    • (2003) Diversity and Distributions , vol.9 , pp. 89-98
    • Collins, J.P.1    Storfer, A.2
  • 12
    • 0034747351 scopus 로고    scopus 로고
    • Comparison of the eIF-2 alpha homologous proteins of seven ranaviruses (Iridoviridae)
    • Essbauer S., Bremont M., Ahne W. Comparison of the eIF-2 alpha homologous proteins of seven ranaviruses (Iridoviridae). Virus Genes. 23:2001;347-359.
    • (2001) Virus Genes , vol.23 , pp. 347-359
    • Essbauer, S.1    Bremont, M.2    Ahne, W.3
  • 13
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using bootstrap
    • Felsenstein J. Confidence limits on phylogenies an approach using bootstrap . Evolution. 39:1985;783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 15
    • 0027399530 scopus 로고
    • Identification of protein coding regions by database similarity search
    • Gish W., States D.J. Identification of protein coding regions by database similarity search. Nature Genet. 3:1993;266-272.
    • (1993) Nature Genet. , vol.3 , pp. 266-272
    • Gish, W.1    States, D.J.2
  • 16
    • 0016244696 scopus 로고
    • Macromolecular synthesis in cells infected with frog virus 3 II. Evidence for post-transcriptional control of a viral structural protein
    • Goorha R., Granoff A. Macromolecular synthesis in cells infected with frog virus 3 II. Evidence for post-transcriptional control of a viral structural protein. Virology. 60:1974;251-259.
    • (1974) Virology , vol.60 , pp. 251-259
    • Goorha, R.1    Granoff, A.2
  • 17
    • 0033619202 scopus 로고    scopus 로고
    • Sequence analysis of the Xestia c-nigrum granulovirus genome
    • Hayakawa T., Ko R., Okano K., Seong S., Goto C., Maeda S. Sequence analysis of the Xestia c-nigrum granulovirus genome. Virology. 262:1999;277-297.
    • (1999) Virology , vol.262 , pp. 277-297
    • Hayakawa, T.1    Ko, R.2    Okano, K.3    Seong, S.4    Goto, C.5    Maeda, S.6
  • 18
    • 0035814498 scopus 로고    scopus 로고
    • Complete genome analysis of the mandarin fish infectious spleen and kidney necrosis iridovirus
    • He J.G., Deng M., Weng S.P., Li Z., Zhou S.Y., Long Q.X., Wang X.Z., Chan S.M. Complete genome analysis of the mandarin fish infectious spleen and kidney necrosis iridovirus. Virology. 291:2001;126-139.
    • (2001) Virology , vol.291 , pp. 126-139
    • He, J.G.1    Deng, M.2    Weng, S.P.3    Li, Z.4    Zhou, S.Y.5    Long, Q.X.6    Wang, X.Z.7    Chan, S.M.8
  • 19
    • 0036056130 scopus 로고    scopus 로고
    • He, J.G., L,L., Deng, M., He, H.H., Weng, S.P., Wang, X.H., Zhou, S.Y., Long, Q.X., Wang, X.Z., Chan, S.M., 2002. Sequence analysis of the complete genome of an iridovirus isolated from the tiger frog. Virology 292, 185-197
    • He, J.G., L,L., Deng, M., He, H.H., Weng, S.P., Wang, X.H., Zhou, S.Y., Long, Q.X., Wang, X.Z., Chan, S.M., 2002. Sequence analysis of the complete genome of an iridovirus isolated from the tiger frog. Virology 292, 185-197.
  • 20
    • 0014202537 scopus 로고
    • Sequence extraction of polyoma DNA from infected mouse cell cultures
    • Hirt B. Sequence extraction of polyoma DNA from infected mouse cell cultures. J. Mol. Biol. 26:1967;365-369.
    • (1967) J. Mol. Biol. , vol.26 , pp. 365-369
    • Hirt, B.1
  • 21
    • 0035919712 scopus 로고    scopus 로고
    • Analysis of the first complete DNA sequence of an invertebrate iridovirus: Coding strategy of the genome of Chilo iridescent virus
    • Jakob N.J., Muller K., Bahr U., Darai G. Analysis of the first complete DNA sequence of an invertebrate iridovirus coding strategy of the genome of Chilo iridescent virus . Virology. 286:2001;182-196.
    • (2001) Virology , vol.286 , pp. 182-196
    • Jakob, N.J.1    Muller, K.2    Bahr, U.3    Darai, G.4
  • 22
    • 0031592277 scopus 로고    scopus 로고
    • Isolation of a lethal virus from the endangered tiger salamander, Ambystoma tigrinum stebbinsi Lowe
    • Jancovich J.K., Davidson E.W., Morado J.F., Jacobs B.L., Collins J.P. Isolation of a lethal virus from the endangered tiger salamander, Ambystoma tigrinum stebbinsi Lowe. Dis. Aquat. Org. 31:1997;161-167.
    • (1997) Dis. Aquat. Org. , vol.31 , pp. 161-167
    • Jancovich, J.K.1    Davidson, E.W.2    Morado, J.F.3    Jacobs, B.L.4    Collins, J.P.5
  • 25
    • 0028907966 scopus 로고
    • A fully 5′-CG-3′ but not a 5′-CCGG-3′ methylated late frog virus 3 promoter retains activity
    • Munnes M., Schetter C., Holker I., Doerfler W. A fully 5′-CG-3′ but not a 5′-CCGG-3′ methylated late frog virus 3 promoter retains activity. J. Virol. 69:1995;2224-2240.
    • (1995) J. Virol. , vol.69 , pp. 2224-2240
    • Munnes, M.1    Schetter, C.2    Holker, I.3    Doerfler, W.4
  • 27
    • 0026562607 scopus 로고
    • A frog virus 3 gene codes for a protein containing the motif characteristic of the INT family of integrases
    • Rohozinski J., Goorha R. A frog virus 3 gene codes for a protein containing the motif characteristic of the INT family of integrases. Virology. 186:1992;693-700.
    • (1992) Virology , vol.186 , pp. 693-700
    • Rohozinski, J.1    Goorha, R.2
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method a new method for reconstructing phylogenetic trees . Mol. Biol. Evol. 4:1987;406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 30
    • 0019304428 scopus 로고
    • Structure of a cloned circular Moloney murine leukemia virus DNA molecule containing an inverted segment: Implications for retroviral integration
    • Shoemaker C., Goff S., Gilboa E., Paskind M., Mitra S.W., Baltimore D. Structure of a cloned circular Moloney murine leukemia virus DNA molecule containing an inverted segment implications for retroviral integration . Proc. Natl. Acad. Sci. USA. 77:1980;3932-3936.
    • (1980) Proc. Natl. Acad. Sci. USA , vol.77 , pp. 3932-3936
    • Shoemaker, C.1    Goff, S.2    Gilboa, E.3    Paskind, M.4    Mitra, S.W.5    Baltimore, D.6
  • 31
    • 0029654258 scopus 로고
    • A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
    • Sonnhammer E.L.L., Durbin R. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene. 167:1995;GC1-10.
    • (1995) Gene , vol.167 , pp. 1-10
    • Sonnhammer, E.L.L.1    Durbin, R.2
  • 32
    • 0034532497 scopus 로고    scopus 로고
    • Phylogenetic position of the Diadromus pulchellus ascovirus DNA polymerase among viruses with large double-stranded DNA genomes
    • Stasiak K., Demattei M.V., Federici B.A., Bigot Y. Phylogenetic position of the Diadromus pulchellus ascovirus DNA polymerase among viruses with large double-stranded DNA genomes. J. Gen. Virol. 81:2000;3059-3072.
    • (2000) J. Gen. Virol. , vol.81 , pp. 3059-3072
    • Stasiak, K.1    Demattei, M.V.2    Federici, B.A.3    Bigot, Y.4
  • 34
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:1993;512-526.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 35
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice . Nucleic Acids Res. 22:1994;4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 36
    • 0031005423 scopus 로고    scopus 로고
    • The complete DNA sequence of lymphocystis disease virus
    • Tidona C.A., Darai G. The complete DNA sequence of lymphocystis disease virus. Virology. 230:1997;207-216.
    • (1997) Virology , vol.230 , pp. 207-216
    • Tidona, C.A.1    Darai, G.2
  • 37
    • 0016790290 scopus 로고
    • Anatomy of herpes virus DNA II. Size, composition and arrangement of inverted terminal repetitions
    • Wadsworth S., Jacob R.J., Roizman B. Anatomy of herpes virus DNA II. Size, composition and arrangement of inverted terminal repetitions. J. Virol. 15:1975;1487-1497.
    • (1975) J. Virol. , vol.15 , pp. 1487-1497
    • Wadsworth, S.1    Jacob, R.J.2    Roizman, B.3
  • 38
    • 0030021332 scopus 로고    scopus 로고
    • The Iridoviruses
    • Williams T. The Iridoviruses. Adv. Virus Res. 46:1996;345-412.
    • (1996) Adv. Virus Res. , vol.46 , pp. 345-412
    • Williams, T.1
  • 39
    • 85030943858 scopus 로고    scopus 로고
    • Williams, T., Chinchar, V.G., Darai, G., Hyatt, A., Kalmakoff, J., Seligy, V., 2000. Iridoviridae, in: van Regenmortel et al. (Eds.), Seventh Report of the International Committee on the Taxonomy of Viruses, pp. 167-182
    • Williams, T., Chinchar, V.G., Darai, G., Hyatt, A., Kalmakoff, J., Seligy, V., 2000. Iridoviridae, in: van Regenmortel et al. (Eds.), Seventh Report of the International Committee on the Taxonomy of Viruses, pp. 167-182.
  • 40
    • 0018927968 scopus 로고
    • Tandem repeats within the inverted terminal repetition of vaccinia virus DNA
    • Wittek R., Moss B. Tandem repeats within the inverted terminal repetition of vaccinia virus DNA. Cell. 21:1980;277-284.
    • (1980) Cell , vol.21 , pp. 277-284
    • Wittek, R.1    Moss, B.2
  • 41
    • 0344631623 scopus 로고    scopus 로고
    • Partial mapping and sequencing of a fish iridovirus genome reveals genes homologous to the frog virus 3 p31, p40 and human eIF2 alpha
    • Yu Y.X., Bearzotti M., Vende P., Ahne W., Bremont M. Partial mapping and sequencing of a fish iridovirus genome reveals genes homologous to the frog virus 3 p31, p40 and human eIF2 alpha. Virus Res. 63:1999;53-63.
    • (1999) Virus Res. , vol.63 , pp. 53-63
    • Yu, Y.X.1    Bearzotti, M.2    Vende, P.3    Ahne, W.4    Bremont, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.