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Volumn 30, Issue 2, 2011, Pages 638-645

Evaluation of housekeeping genes as references for quantitative real time RT-PCR analysis of gene expression in Japanese flounder (Paralichthys olivaceus)

Author keywords

Housekeeping gene; Paralichthys olivaceus; Quantitative real time RT PCR; Reference gene

Indexed keywords

BACTERIA (MICROORGANISMS); PARALICHTHYS OLIVACEUS; PLEURONECTOIDEI;

EID: 79551617102     PISSN: 10504648     EISSN: 10959947     Source Type: Journal    
DOI: 10.1016/j.fsi.2010.12.014     Document Type: Article
Times cited : (204)

References (30)
  • 1
    • 21344471138 scopus 로고    scopus 로고
    • Real-time RT-PCR normalisation; strategies and considerations
    • Huggett J., Dheda K., Bustin S., Zumla A. Real-time RT-PCR normalisation; strategies and considerations. Genes Immun 2005, 6:279-284.
    • (2005) Genes Immun , vol.6 , pp. 279-284
    • Huggett, J.1    Dheda, K.2    Bustin, S.3    Zumla, A.4
  • 2
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
    • Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 2001, 25:402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 3
    • 28544451081 scopus 로고    scopus 로고
    • Gene expression studies in prostate cancer tissue: which reference gene should be selected for normalization
    • Ohl F., Jung M., Xu C., Stephan C., Rabien A., Burkhardt M., et al. Gene expression studies in prostate cancer tissue: which reference gene should be selected for normalization. J Mol Med 2005, 83:1014-1024.
    • (2005) J Mol Med , vol.83 , pp. 1014-1024
    • Ohl, F.1    Jung, M.2    Xu, C.3    Stephan, C.4    Rabien, A.5    Burkhardt, M.6
  • 6
    • 0027198854 scopus 로고
    • Cell cycle regulation of the glyceraldehydes-3-phosphate dehydrogenase/uracil glycosylase gene in normal human cell
    • Mansur N.R., Meyer-Stegler K., Wurtz J.C., Sirover M.A. Cell cycle regulation of the glyceraldehydes-3-phosphate dehydrogenase/uracil glycosylase gene in normal human cell. Nucleic Acids Res 1993, 21:993-998.
    • (1993) Nucleic Acids Res , vol.21 , pp. 993-998
    • Mansur, N.R.1    Meyer-Stegler, K.2    Wurtz, J.C.3    Sirover, M.A.4
  • 7
    • 0034694128 scopus 로고    scopus 로고
    • Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR
    • Schmittgen T.D., Zakrajsek B.A. Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR. J Biochem Biophys Methods 2000, 46:69-81.
    • (2000) J Biochem Biophys Methods , vol.46 , pp. 69-81
    • Schmittgen, T.D.1    Zakrajsek, B.A.2
  • 8
    • 0036668567 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time reverse transcription (PCR QPCR): trends and problems
    • Bustin S.A. Quantification of mRNA using real-time reverse transcription (PCR QPCR): trends and problems. J Mol Endocrinol 2002, 29:23-29.
    • (2002) J Mol Endocrinol , vol.29 , pp. 23-29
    • Bustin, S.A.1
  • 9
    • 3142615272 scopus 로고    scopus 로고
    • Validation of housekeeping genes for normalizing RNA expression in real-time PCR
    • 112-4, 116, 118-9
    • Dheda K., Huggett J.F., Bustin S.A., Johnson M.A., Rook G., Zumla A. Validation of housekeeping genes for normalizing RNA expression in real-time PCR. Biotechniques 2004, 37. 112-4, 116, 118-9.
    • (2004) Biotechniques , vol.37
    • Dheda, K.1    Huggett, J.F.2    Bustin, S.A.3    Johnson, M.A.4    Rook, G.5    Zumla, A.6
  • 10
    • 33645505177 scopus 로고    scopus 로고
    • Comparison of in vitro and in vivo reference genes for internal standardization of real-time PCR data
    • Gilsbach R., Kouta M., Bönisch H., Brüss M. Comparison of in vitro and in vivo reference genes for internal standardization of real-time PCR data. Biotechniques 2006, 40:173-177.
    • (2006) Biotechniques , vol.40 , pp. 173-177
    • Gilsbach, R.1    Kouta, M.2    Bönisch, H.3    Brüss, M.4
  • 11
    • 56949096503 scopus 로고    scopus 로고
    • Selection of reference genes for qRT-PCR examination of wild populations of Atlantic cod Gadus morhua
    • Olsvik P.A., Søfteland L., Lie K.K. Selection of reference genes for qRT-PCR examination of wild populations of Atlantic cod Gadus morhua. BMC Res Notes 2008, 1:47.
    • (2008) BMC Res Notes , vol.1 , pp. 47
    • Olsvik, P.A.1    Søfteland, L.2    Lie, K.K.3
  • 12
    • 41449097016 scopus 로고    scopus 로고
    • Selection of housekeeping genes for gene expression studies in larvae from flatfish using real-time PCR
    • Infante C., Matsuoka M.P., Asensio E., Cañavate J.P., Reith M., Manchado M. Selection of housekeeping genes for gene expression studies in larvae from flatfish using real-time PCR. BMC Mol Biol 2008, 9:28.
    • (2008) BMC Mol Biol , vol.9 , pp. 28
    • Infante, C.1    Matsuoka, M.P.2    Asensio, E.3    Cañavate, J.P.4    Reith, M.5    Manchado, M.6
  • 13
    • 69849087745 scopus 로고    scopus 로고
    • Selection of reference genes for expression studies with fish myogenic cell cultures
    • Bower N.I., Johnston I.A. Selection of reference genes for expression studies with fish myogenic cell cultures. BMC Mol Biol 2009, 10:80.
    • (2009) BMC Mol Biol , vol.10 , pp. 80
    • Bower, N.I.1    Johnston, I.A.2
  • 14
    • 57049147881 scopus 로고    scopus 로고
    • Characterization of housekeeping genes in zebrafish: male-female differences and effects of tissue type, developmental stage and chemical treatment
    • McCurley A.T., Callard G.V. Characterization of housekeeping genes in zebrafish: male-female differences and effects of tissue type, developmental stage and chemical treatment. BMC Mol Biol 2008, 9:102.
    • (2008) BMC Mol Biol , vol.9 , pp. 102
    • McCurley, A.T.1    Callard, G.V.2
  • 15
    • 33749536616 scopus 로고    scopus 로고
    • Pathogenicity of Edwardsiella tarda to olive flounder, Paralichthys olivaceus (Temminck & Schlegel)
    • Han H.J., Kim D.H., Lee D.C., Kim S.M., Park S.I. Pathogenicity of Edwardsiella tarda to olive flounder, Paralichthys olivaceus (Temminck & Schlegel). J Fish Dis 2006, 29:601-609.
    • (2006) J Fish Dis , vol.29 , pp. 601-609
    • Han, H.J.1    Kim, D.H.2    Lee, D.C.3    Kim, S.M.4    Park, S.I.5
  • 16
    • 67349237092 scopus 로고    scopus 로고
    • Construction of an attenuated Pseudomonas fluorescens strain and evaluation of its potential as a cross-protective vaccine
    • Wang H.R., Hu Y.H., Zhang W.W., Sun L. Construction of an attenuated Pseudomonas fluorescens strain and evaluation of its potential as a cross-protective vaccine. Vaccine 2009, 27:4047-4055.
    • (2009) Vaccine , vol.27 , pp. 4047-4055
    • Wang, H.R.1    Hu, Y.H.2    Zhang, W.W.3    Sun, L.4
  • 17
    • 61449127305 scopus 로고    scopus 로고
    • Phenotypic characteristics of Streptococcus iniae and Streptococcus parauberis isolated from olive flounder (Paralichthys olivaceus)
    • Nho S.W., Shin G.W., Park S.B., Jang H.B., Cha I.S., Ha M.A., et al. Phenotypic characteristics of Streptococcus iniae and Streptococcus parauberis isolated from olive flounder (Paralichthys olivaceus). FEMS Microbiol Lett 2009, 293:20-27.
    • (2009) FEMS Microbiol Lett , vol.293 , pp. 20-27
    • Nho, S.W.1    Shin, G.W.2    Park, S.B.3    Jang, H.B.4    Cha, I.S.5    Ha, M.A.6
  • 18
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034
    • Vandesompele J., De Preter K., Pattyn F., Poppe B., Van Roy N., De Paepe A., et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002, 3. RESEARCH0034.
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6
  • 19
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen C.L., Jensen J.L., Ørntoft T.F. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 2004, 64:5245-5250.
    • (2004) Cancer Res , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Ørntoft, T.F.3
  • 20
    • 51149119260 scopus 로고    scopus 로고
    • Regulation of autoinducer 2 production and luxS expression in a pathogenic Edwardsiella tarda strain
    • Zhang M., Sun K., Sun L. Regulation of autoinducer 2 production and luxS expression in a pathogenic Edwardsiella tarda strain. Microbiology 2008, 154:2060-2069.
    • (2008) Microbiology , vol.154 , pp. 2060-2069
    • Zhang, M.1    Sun, K.2    Sun, L.3
  • 22
    • 77955048974 scopus 로고    scopus 로고
    • Beta-Actin is a useful internal control for tissue-specific gene expression studies using quantitative real-time PCR in the half-smooth tongue sole Cynoglossus semilaevis challenged with LPS or Vibrio anguillarum
    • Li Z., Yang L., Wang J., Shi W., Pawar R.A., Liu Y., et al. Beta-Actin is a useful internal control for tissue-specific gene expression studies using quantitative real-time PCR in the half-smooth tongue sole Cynoglossus semilaevis challenged with LPS or Vibrio anguillarum. Fish Shellfish Immunol 2010, 29:89-93.
    • (2010) Fish Shellfish Immunol , vol.29 , pp. 89-93
    • Li, Z.1    Yang, L.2    Wang, J.3    Shi, W.4    Pawar, R.A.5    Liu, Y.6
  • 23
    • 77951949077 scopus 로고    scopus 로고
    • Evaluation of potential reference genes for real time RT-PCR studies in Atlantic halibut (Hippoglossus Hippoglossus L.); during development, in tissues of healthy and NNV-injected fish, and in anterior kidney leucocytes
    • Øvergård A.C., Nerland A.H., Patel S. Evaluation of potential reference genes for real time RT-PCR studies in Atlantic halibut (Hippoglossus Hippoglossus L.); during development, in tissues of healthy and NNV-injected fish, and in anterior kidney leucocytes. BMC Mol Biol 2010, 11:36.
    • (2010) BMC Mol Biol , vol.11 , pp. 36
    • Øvergård, A.C.1    Nerland, A.H.2    Patel, S.3
  • 24
    • 33847286537 scopus 로고    scopus 로고
    • Appropriate 'housekeeping' genes for use in expression profiling the effects of environmental estrogens in fish
    • Filby A.L., Tyler C.R. Appropriate 'housekeeping' genes for use in expression profiling the effects of environmental estrogens in fish. BMC Mol Biol 2007, 8:10.
    • (2007) BMC Mol Biol , vol.8 , pp. 10
    • Filby, A.L.1    Tyler, C.R.2
  • 25
    • 52149099642 scopus 로고    scopus 로고
    • Stability of reference genes for real-time PCR analyses in channel catfish (Ictalurus punctatus) tissues under varying physiological conditions
    • Small B.C., Murdock C.A., Bilodeau-Bourgeois A.L., Peterson B.C., Waldbieser G.C. Stability of reference genes for real-time PCR analyses in channel catfish (Ictalurus punctatus) tissues under varying physiological conditions. Comp Biochem Physiol B Biochem Mol Biol 2008, 151:296-304.
    • (2008) Comp Biochem Physiol B Biochem Mol Biol , vol.151 , pp. 296-304
    • Small, B.C.1    Murdock, C.A.2    Bilodeau-Bourgeois, A.L.3    Peterson, B.C.4    Waldbieser, G.C.5
  • 26
    • 42149171231 scopus 로고    scopus 로고
    • Expression profiling and validation of potential reference genes during Paralichthys olivaceus embryogenesis
    • Zhong Q., Zhang Q., Wang Z., Qi J., Chen Y., Li S., et al. Expression profiling and validation of potential reference genes during Paralichthys olivaceus embryogenesis. Mar Biotechnol (NY) 2008, 10:310-318.
    • (2008) Mar Biotechnol (NY) , vol.10 , pp. 310-318
    • Zhong, Q.1    Zhang, Q.2    Wang, Z.3    Qi, J.4    Chen, Y.5    Li, S.6
  • 27
    • 16844384618 scopus 로고    scopus 로고
    • Isolation and characterization of ornithine decarboxylase gene from flounder (Paralichthys olivaceus)
    • Lee J.H., Son M.Y., Yoon M.Y., Choi J.D., Kim Y.T. Isolation and characterization of ornithine decarboxylase gene from flounder (Paralichthys olivaceus). Mar Biotechnol (NY) 2004, 6:453-462.
    • (2004) Mar Biotechnol (NY) , vol.6 , pp. 453-462
    • Lee, J.H.1    Son, M.Y.2    Yoon, M.Y.3    Choi, J.D.4    Kim, Y.T.5
  • 28
    • 18744378350 scopus 로고    scopus 로고
    • Cloning and characterization of glyceraldehyde-3-phosphate dehydrogenase cDNA of Japanese flounder Paralychthys olivaceus
    • Aoki T., Naka H., Katagiri T., Hirono I. Cloning and characterization of glyceraldehyde-3-phosphate dehydrogenase cDNA of Japanese flounder Paralychthys olivaceus. Fish Sci 2000, 66:737-742.
    • (2000) Fish Sci , vol.66 , pp. 737-742
    • Aoki, T.1    Naka, H.2    Katagiri, T.3    Hirono, I.4
  • 29
    • 67349088310 scopus 로고    scopus 로고
    • Cloning and characterization of hypusine-containing protein eIF5A from the olive flounder Paralichthys olivaceus
    • Kong H.J., Hong G.E., Kim W.J., Kim Y.O., Nam B.H., Lee C.H., et al. Cloning and characterization of hypusine-containing protein eIF5A from the olive flounder Paralichthys olivaceus. Comp Biochem Physiol B Biochem Mol Biol 2009, 153:281-287.
    • (2009) Comp Biochem Physiol B Biochem Mol Biol , vol.153 , pp. 281-287
    • Kong, H.J.1    Hong, G.E.2    Kim, W.J.3    Kim, Y.O.4    Nam, B.H.5    Lee, C.H.6
  • 30
    • 33646384390 scopus 로고    scopus 로고
    • Molecular characterization and expression analysis of stanniocalcin-1 in turbot (Scophthalmus maximus)
    • Shin J., Oh D., Sohn Y.C. Molecular characterization and expression analysis of stanniocalcin-1 in turbot (Scophthalmus maximus). Gen Comp Endocrinol 2006, 147:214-221.
    • (2006) Gen Comp Endocrinol , vol.147 , pp. 214-221
    • Shin, J.1    Oh, D.2    Sohn, Y.C.3


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