The complete DNA sequence of lymphocystis disease virus

Virology

Volumn 230, Issue 2, 1997, Pages 207-216

  Tidona, Christian A ^a   Darai, Gholamreza ^a  

^a UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; DNA SEQUENCE; IRIDOVIRUS; NONHUMAN; OPEN READING FRAME; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; VIRUS GENOME;

IRIDOVIRUS; LYMPHOCYSTIS DISEASE VIRUS; LYMPHOCYSTIVIRUS; MIRIDAE; PLEURONECTOIDEI;

EID: 0031005423     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1997.8456     Document Type: Article

References (72)

1. Acker J., Wintzerith M., Vigneron M., Kédinger C. Primary structure of the second largest subunit of human RNA polymerase II (or B). J. Mol. Biol. 226:1992;1295-1299.
2. Alam J., Curtis S., Gleason F. K., Gerami-Nejad M., Fuchs J. A. Isolation, sequence, and expression inEscherichia coliAnabaena sp. J. Bacteriol. 171:1989;162-171.
3. Bairoch A. A dictionary of sites and patterns in proteins. Nucleic Acids Res. 19:1991;2241-2245.
4. Baker S. J., Reddy E. P. Transducers of life and death: TNF receptor superfamily and associated proteins. Oncogene. 12:1996;1-9.
5. Beckman W., Tham T. N., Aubertin A. M., Willis D. B. Structure and regulation of the immediate-early frog virus 3 gene that encodes ICR489. J. Virol. 62:1988;1271-1277.
6. Blasco R., Cole N. B., Moss B. Sequence analysis, expression, and deletion of a vaccinia virus gene encoding a homolog of profilin, a eukaryotic actin-binding protein. J. Virol. 65:1991;4598-4608.
7. Caras I. W., Levinson B. B., Fabry M., Williams S. R., Martin D. W. Jr. Cloned mouse ribonucleotide reductase subunit M1 cDNA reveals amino acid sequence homology withEscherichia coli. J. Biol. Chem. 260:1985;7015-7022.
8. Chan S. J., San Segundo B., McCormick M. B., Steiner D. F. Nucleotide and predicted amino acid sequences of cloned human and mouse preprocathepsin B cDNAs. Proc. Natl. Acad. Sci. USA. 83:1986;7721-7725.
9. Cordeiro M. do N., Diniz C. R., Valentim A. do C., Von Eickstedt V. R., Gilroy J., Richardson M. The purification and amino acid sequences of four Tx2 neurotoxins from the venom of the Brazilian 'armed' spiderPhoneutria nigriventer. FEBS Lett. 310:1992;153-156.
10. Dahlkvist A., Sunnerhagen P. Two novel deduced serine/threonine protein kinases from Saccharomyces cerevisiae. Gene. 139:1994;27-33.
11. Darai G., Anders K., Koch H. G., Delius H., Gelderblom H., Samalecos C., Flügel R. M. Analysis of the genome of fish lymphocystis disease virus isolated directly from epidermal tumours of pleuronectes. Virology. 126:1983;466-479.
12. Darai G., Delius H., Clarke J., Apfel H., Schnitzler P., Flügel R. M. Molecular cloning and physical mapping of the genome of fish lymphocystis disease virus. Virology. 146:1985;292-301.
13. Davison A. J. Channel catfish virus: A new type of herpesvirus. Virology. 186:1992;9-14.
14. Delius H., Darai G., Flügel R. M. DNA analysis of insect iridescent virus 6: Evidence for circular permutation and terminal redundancy. J. Virol. 49:1984;609-614.
15. Dibartolomeis S. M., Gerbi S. A. Molecular characterization of DNA puff II/9A genes in Sciara coprophila. J. Mol. Biol. 210:1989;531-540.
16. Eisenberg D., Schwarz E., Komaromy M., Wall R. Analysis of membrane and surface protein sequences with the hydrophobic moment plot. J. Mol. Biol. 179:1984;125-142.
17. Flügel R. M., Darai G., Gelderblom H. Viral proteins and adenosine triphosphate phosphohydrolase activity of fish lymphocystis disease virus. Virology. 122:1982;48-55.
18. Goebel S. J., Johnson G. P., Perkus M. E., Davis S. W., Winslow J. P., Paoletti E. The complete DNA sequence of vaccinia virus. Virology. 179:1990;247-266.
19. Goorha R., Murti K. G. The genome of FV3, an animal DNA virus is circularly permuted and terminally redundant. Proc. Natl. Acad. Sci. USA. 79:1982;248-252.
20. Grabherr R., Strasser P., Van Etten J. L. The DNA polymerase gene from chlorella viruses PBCV-1 and NY-2A contains an intron with nuclear splicing sequences. Virology. 188:1992;721-731.
21. Graves M. V., Meints R. H. Characterization of the major capsid protein and cloning of its gene from algal virus PBCV-1. Virology. 188:1992;198-207.
22. Heaney M. L., Golde D. W. Soluble cytokine receptors. Blood. 87:1996;847-857.
23. Higgins D. G., Sharp P. M. CLUSTAL: A package for performing multiple sequence alignment on a microcomputer. Gene. 73:1988;237-244.
24. Howse H. D., Christmas J. Y. Lymphocystis tumors: Histochemical identification of hyaline substances. Trans. Am. Microsc. Soc. 89:1970;276-282.
25. Humbel R. E. Insulin-like growth factors I and II. Eur. J. Biochem. 190:1990;445-462.
26. Irie K., Takase M., Lee K. S., Levin D. E., Araki H., Matsumoto K., Oshima Y. MKK1 and MKK2, which encodeSaccharomyces cerevisiae. Mol. Cell. Biol. 13:1993;3076-3083.
27. Kallincos N. C., Wallace J. C., Francis G. L., Ballard F. J. Chemical and biological characterization of chicken insulin-like growth factor-II. J. Endocrinol. 124:1990;89-97.
28. Kaur K., Rohozinski J., Goorha R. Identification and characterization of the frog virus 3 DNA methyltransferase gene. J. Gen. Virol. 76:1995;1937-1943.
29. Kimura T., Mattei M. G., Stevens J. W., Goldring M. B., Ninomiya Y., Olsen B. R. Molecular cloning of rat and human type IX collagen cDNA and localization of the alpha 1(IX) gene on the human chromosome 6. Eur. J. Biochem. 179:1989;71-78.
30. Koonin E. V. A highly conserved sequence motif defining the family of MutT-related proteins from eubacteria, eukaryotes and viruses. Nucleic Acids Res. 21:1993;4847.
31. Leibovici M., Gusse M., Bravo R., Méchali M. Characterization and developmental expression ofXenopus. Dev. Biol. 141:1990;183-192.
32. Lin P. M., Lee C. H., Roberts R. J. Cloning and characterization of the genes encoding theMsp. Nucleic Acids Res. 17:1989;3001-3011.
33. Lipman D. J., Pearson W. R. Rapid and sensitive protein similarity searches. Science. 227:1985;1435-1441.
34. Mallett S., Fossum S., Barclay A. N. Characterization of the MRC OX40 antigen of activated CD4 positive T lymphocytes - A molecule related to nerve growth factor receptor. EMBO J. 9:1990;1063-1068.
35. Massung R. F., Jayarama V., Moyer R. W. DNA sequence analysis of conserved and unique regions of swinepox virus: Identification of genetic elements supporting phenotypic observations including a novel G protein-coupled receptor homologue. Virology. 197:1993;511-528.
36. Méjean V., Salles C., Bullions L. C., Bessman M. J., Claverys J. P. Characterization of the mutX gene ofStreptococcus pneumoniaeEscherichia coli. Mol. Microbiol. 11:1994;323-330.
37. Meselson M., Yuan R., Heywood J. Restriction modification enzyme systems in bacteria. Annu. Rev. Biochem. 41:1972;447-466.
38. Müller M., Schnitzler P., Koonin E. V., Darai G. Identification and properties of the largest subunit of the DNA-dependent RNA polymerase of fish lymphocystis disease virus: Dramatic difference in the domain organisation in the iridoviridae family. J. Gen. Virol. 76:1995;1099-1107.
39. F. A. Murphy, C. M. Fauquet, D. H. L. Bishop, S. A. Ghabrial, A. W. Jarvis, G. P. Martelli, M. A. Mayo, M. D. Summers, 1994, Virus taxonomy, Sixth Report of the International Committee on Taxonomy of Viruses, 95, 99, Springer-Verlag, Vienna/New York.
40. Murray J. M., Tavassoli M. Structural and functional conservation of the human homolog of theSchizosaccharomyces pombe. Mol. Cell. Biol. 14:1994;4878-4888.
41. Niles E. G., Condit R. C., Caro P., Davidson K., Matusick L., Seto J. Nucleotide sequence and genetic map of the 16-kb vaccinia virusHin. Virology. 153:1986;96-112.
42. Nogi Y., Yano R., Dodd J., Carles C., Nomura M. Gene RRN4 inSaccharomyces cerevisiae. Mol. Cell. Biol. 13:1993;114-122.
43. Paperna I., Sabnai I., Colorni A. An outbreak of lymphocystis inSparus aurata. J. Fish Diseases. 5:1982;433-437.
44. Patel K. R., Smith K. T., Campo M. S. The nucleotide sequence and genome organization of bovine papillomavirus type 4. J. Gen. Virol. 68:1987;2117-2128.
45. Pavloff N., Rivard D., Masson S., Shen S. H. Sequence analysis of the large and small subunits of human ribonucleotide reductase. DNA Seq. 2:1992;227-234.
46. Ruiz-Lara S., Prats E., Casas M. T., Cornudella L. Molecular cloning and sequence of a cDNA for the sperm-specific protein phi 1 from the mussel Mytilus edulis. Nucleic Acids Res. 21:1993;2774.
47. Schmitt M. P., Tondre L., Kirn A., Aubertin A. M. The nucleotide sequence of a delayed early gene (31K) of frog virus 3. Nucleic Acids Res. 18:1990;4000.
48. Schnitzler P., Soltau J. B., Fischer M., Reisner H., Scholz J., Delius H., Darai G. Molecular cloning and physical mapping of the genome of insect iridescent virus type 6: Further evidence for circular permutation of the viral genome. Virology. 160:1987;66-74.
49. Schnitzler P., Rösen-Wolff A., Darai G. Molecular biology of fish lymphocystis disease virus. Molecular Biology of Iridoviruses. 1990;Kluwer, Boston/Dordrecht/London. p. 203-234.
50. Schnitzler P., Darai G. Identification of the gene encoding the major capsid protein of fish lymphocystis disease virus. J. Gen. Virol. 74:1993;2143-2150.
51. Schnitzler P., Sonntag K. C., Müller M., Janssen W., Bugert J. J., Koonin E. V., Darai G. Insect iridescent virus type 6 encodes a polypeptide related to the largest subunit of eukaryotic RNA polymerase II. J. Gen. Virol. 75:1994;1557-1567.
52. Scholz J., Rösen-Wolff A., Touray M., Schnitzler P., Darai G. Identification, mapping and cloning of the thymidine kinase gene of fish lymphocystis disease virus. Virus Res. 9:1988;63-72.
53. Shchelkunov S. N., Blinov V. M., Sandakhchiev L. S. Genes of variola and vaccinia viruses necessary to overcome the host protective mechanisms. FEBS Lett. 319:1993;80-83.
54. Sidow A. Diversification of the Wnt gene family on the ancestral lineage of vertebrates. Proc. Natl. Acad. Sci. USA. 89:1992;5098-5102.
55. Soltau J. B., Fischer M., Schnitzler P., Scholz J., Darai G. Characterization of the genome of insect iridescent virus type 6 by physical mapping. J. Gen. Virol. 68:1987;2717-2722.
56. Smith C. A., Davis T., Wignall J. M., Din W. S., Farrah T., Upton C., McFadden G., Goodwin R. G. T2 open reading frame from the shope fibroma virus encodes a soluble form of the TNF receptor. Biochem. Biophys. Res. Commun. 176:1991a;335-342.
57. Smith G. L., Chan Y. S., Howard S. T. Nucleotide sequence of 42 kbp of vaccinia virus strain WR from near the right inverted terminal repeat. J. Gen. Virol. 72:1991b;1349-1376.
58. Stohwasser R., Raab K., Schnitzler P., Janssen W., Darai G. Identification of the gene encoding the major capsid protein of insect iridescent virus type 6 by polymerase chain reaction. J. Gen. Virol. 74:1993;873-879.
59. Strayer D. S., Jerng H. H., O'Connor K. Sequence and analysis of a portion of the genomes of Shope fibroma virus and malignant rabbit fibroma virus that is important for viral replication in lymphocytes. Virology. 185:1991;585-595.
60. Surosky R. T., Strich R., Esposito R. E. The yeast UME5 gene regulates the stability of meiotic mRNAs in response to glucose. Mol. Cell. Biol. 14:1994;3446-3458.
61. Telford E. A., Watson M. S., McBride K., Davison A. J. The DNA sequence of equine herpesvirus-1. Virology. 189:1992;304-316.
62. Tidona C. A., Schnitzler P., Kehm R., Darai G. Identification of the gene encoding the DNA (cytosine-5) methyltransferase of lymphocystis disease virus. Virus Genes. 12:1996;219-229.
63. Tomley F., Binns M., Campbell J., Boursnell M. Sequence analysis of an 11.2 kilobase, near-terminal,Bam. J. Gen. Virol. 69:1988;1025-1040.
64. Upton C., Macen J. L., Schreiber M., McFadden G. Myxoma virus expresses a secreted protein with homology to the tumor necrosis factor receptor gene family that contributes to viral virulence. Virology. 184:1991;370-382.
65. Van der Rest M., Garrone R. Collagen family of proteins. FASEB J. 5:1991;2814-2823.
66. Von Heijne G. A new method for predicting signal sequence cleavage sites. Nucleic Acids Res. 14:1986;4683-4690.
67. Wagner H., Simon D., Werner E., Gelderblom H., Darai G., Flügel R. M. Methylation pattern of DNA of fish lymphocystis disease virus. J. Virol. 53:1985;1005-1007.
68. Walker R. Fine structure of lymphocystis disease virus in fish. Virology. 18:1962;503-505.
69. Walker R., Weissenberg R. Conformity of light and electron microscopic studies on virus particle distribution in lymphocystis tumor cells of fish. Ann. N. Y. Acad. Sci. 126:1965;375-385.
70. Ward V. K., Kalmakoff J. Physical mapping of the DNA genome of insect iridescent virus type 9 fromWiseana. Virology. 160:1987;507-510.
71. Willis D. B., Granoff A. FV3 DNA is heavily methylated at CpG sequences. Virology. 107:1980;250-257.
72. Zhang Y., Nelson M., Nletfeldt J. W., Burbank D. E., Van Etten J. L. Characterization of chlorella virus PBCV-1Cvi. Nucleic Acids Res. 20:1992;5351-5356.