Genetic structure of populations of Rhizoctonia solani anastomosis group-1 IA from soybean in Brazil

Phytopathology

Volumn 98, Issue 8, 2008, Pages 932-941

  Ciampi, M B ^a   Meyer, M C ^b   Costa, M J N ^c   Zala, M ^d   McDonald, B A ^d   Ceresini, P C ^a,d  

^a SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

^b EMBRAPA CERRADOS   (Brazil)

^c Fundação Rio Verde   (Brazil)

^d ETH ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

HUMAN GROWTH HORMONE;

ARTICLE; BRAZIL; DEMOGRAPHY; GENETIC VARIABILITY; GENETICS; HYPHOMYCETES; MICROBIOLOGY; PLANT DISEASE; SOYBEAN;

BRAZIL; DEMOGRAPHY; GENETIC VARIATION; HUMAN GROWTH HORMONE; PLANT DISEASES; RHIZOCTONIA; SOYBEANS;

BASIDIOMYCOTA; FUNGI; GLYCINE MAX; HYPHOMYCETES; THANATEPHORUS CUCUMERIS;

EID: 49449114017     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-98-8-0932     Document Type: Article

References (72)

1. Adams, G. C., Jr. 1996. Genetics of Rhizoctonia species. Pages 101-106 in: Rhizoctonia Species: Taxonomy, Molecular Biology, Ecology, Pathology and Disease Control. B. Sneh, S. Jabaji-Hare, S. Neate, and G. Dijst, eds. Kluwer Academic, Dordrecht, the Netherlands.
2. Adams, G. C., Jr. 1988. Thanathephorus cucumeris (Rhizoctonia solani), a species complex of wide host range. Pages 535-552 in: Genetics of Plant Pathogenic Fungi. D. S. Ingram and P. H. Williams, eds. Academic Press, London.
3. Adams, G. C., Jr., and Butler, E. E. 1982. A reinterpretation of the sexuality of Thanatephorus cucumeris anastomosis group four. Mycologia 74:793-800.
4. Agapow, P.-M., and Burt, A. 2001. Indices of multilocus linkage disequilibrium. Mol. Ecol. Notes 1:101-102.
5. Almeida, A. M. R., Ferreira, L. P., Yorinori, J. T., Silva, J. F. V., and Henning, A. A. 1997. Doenças da soja. In Manual de Fitopatologia: Doenças das plantas cultivadas. H. Kimati, L. Amorim, A. Bergamim Filho, L. Camargo, and J. Rezende, eds. Agronômica Ceres, São Paulo.
6. Beerli, P., and Felsenstein, J. 2001. Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. PNAS 98:4563-4568.
7. Bennett, R. S., Milgroom, M. G., and Bergstrom, G. C. 2005. Population structure of seedborne Phaeosphaeria nodorum on New York wheat. Phytopathology 95:300-305.
8. Bolkan, H. A., and Ribeiro, W. R. C. 1985. Anastomosis groups and pathogenicity of Rhizoctonia solani isolates from Brazil. Plant Pathol. 69:599-601.
9. Ceresini, P. C., Shew, H. D., James, T. Y., Vilgalys, R. J., and Cubeta, M. A. 2007. Phylogeography of the solanaceae-infecting Basidiomycota fungus Rhizoctonia solani AG-3 based on sequence analysis of two nuclear DNA loci. BMC Evol. Biol. 13:163.
10. Ciampi, M. B., Kuramae, E. E., Fenille, R. C., Meyer, M. C., Souza, N. L., and Ceresini, P. C. 2005. Intraspecific evolution of Rhizoctonia solani AG-1 IA associated with soybean and rice in Brazil based on polymorphisms at the ITS-5.8S rDNA operon. Eur. J. Plant Pathol. 113:183-196.
11. Conab. 2007. Oitavo levantamento. Pages 11-12 in: Avaliação da safra agrícola 2006, edited by Ministério da Agricultura Pecuária e Abastecimento. Companhia Nacional de Abastecimento - Conab, Brasilia Embrapa Agropecuária Oeste, Brazil.
12. Cornuet, J. M., and Luikart, G. 1996. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001-2014.
13. Cubeta, M. A., Briones-Ortega, R., and Vilgalys, R. 1993. Reassessment of heterokaryon formation in Rhizoctonia solani anastomosis group 4. Mycologia 85:777-787.
14. Cubeta, M. A., and Vilgalys, R. 1997. Population biology of the Rhizoctonia solani complex. Phytopathology 87:480-484.
15. Dupanloup, I., Schneider, S., and Excoffier, L. 2002. A simulated annealing approach to define the genetic structure of populations. Mol. Ecol. 11:2571-2581.
16. El Mousadik, A., and Petit, R. J. 1996. High level of genetic differentiation for allelic richness among populations of the argan tree (Argania spinosa [L.] Skeels) endemic to Morocco. Theor. Appl. Genet. 92:832-839.
17. Embrapa. 2006. Tecnologias de produção de soja - região central do Brasil - 2007, edited by Ministério da Agricultura Pecuária e Abastecimento: Empresa Brasileira de Pesquisa Agropecuária - Embrapa Soja, Embrapa Cerrados, Embrapa Agropecuária Oeste, Brazil.
18. Excoffier, L., Laval, G., and Schneider, S. 2005. Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evol. Bioinform. Online 1:47-50.
19. Excoffier, L., Smouse, P. E., and Quattro, J. M. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 131:479-491.
20. Fearnside, P. M. 2001. Soybean cultivation as a threat to the environment in Brazil. Environ. Conserv. 28:23-38.
21. Fenille, R. C. 2001. Caracterização citomorfologica, cultural, molecular e patogênica de Rhizoctonia solani Kühn associado à soja no Brasil, Proteção de Plantas, Faculdade de Ciências Agronômicas, Universidade Estadual Paulista "Júlio de Mesquita Filho", Botucatu, Brazil.
22. Fenille, R. C., Ciampi, M. B., Kuramae, E. E., and Souza, N. L. 2003. Identification of Rhizoctonia solani associated with soybean in Brazil by rDNA-ITS sequences. Fitopatol. Bras. 28:413-419.
23. Fenille, R. C., Souza, N. L., and Kuramae, E. E. 2002. Characterization of Rhizoctonia solani associated with soybean in Brazil. Eur. J. Plant Pathol. 108:783-792.
24. Garnier-Gere, P., and Dillmann, C. 1992. A computer program for testing pairwise linkage disequilibria in subdivided populations. J. Hered. 83:239.
25. Goudet, J. 1995. FSTAT (Version 1.2): A computer program to calculate F-statistics. J. Hered. 86:485-486.
26. Grunwald, N. J., Goodwin, S. B., Milgroom, M. G., and Fry, W. E. 2003. Analysis of genotypic diversity data for populations of microorganisms. Phytopathology 93:738-746.
27. Guo, S. W., and Thompson, E. A. 1992. Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometrics 48:361-372.
28. Hartl, D. L., and Clark, A. G. 1997. Principles of Population Genetics. 3rd ed. Sinauer Associates, Sunderland, MA.
29. Hurlbert, S. 1971. The nonconcept of species diversity: A critique and alternative parameters. Ecology 52:577-586.
30. Igreja, A. C. M., Yokoyama, L. P., Rocha, M. B., and de Almeida, J. 1995. Cultura do arroz nos estados de Goiás e Tocantins: Aspectos socioeconômicos e tecnológicos nos sistemas de cultivo. Agricultura em São Paulo 42:65-93.
31. Jones, R. K., and Belmar, S. B. 1989. Characterization and pathogenicity of Rhizoctonia spp. isolated from rice, soybean, and other crops grown in rotation with rice in Texas. Plant Dis. 73:1004-1010.
32. Julian, M. C., Acero, J., Salazar, O., Keijer, J., and Victor, R. 1999. Mating type-correlated molecular markers and demonstration of heterokaryosis in the phytopathogenic fungus Thanatephorus cucumeris (Rhizoctonia solani) AG 1-IC by AFLP DNA fingerprinting analysis. J. Biotechnol. 67:49-56.
33. Ko, W., and Hora, F. 1971. A selective medium for the quantitative determination of Rhizoctonia solani in soil. Phytopathology 61:707-710.
34. Kuhner, M. K. 2006. LAMARC 2.0: Maximum likelihood and Bayesian estimation of population parameters. Bioinformatics 22:768-770.
35. Kuhner, M. K., and Smith, L. P. 2007. Comparing likelihood and bayesian coalescent estimation of population parameters. Genetics 175:155-165.
36. Linde, C. C., Zala, M., Paulraj, R. S. D., McDonald, B. A., and Gnanamanickam, S. S. 2005. Population structure of the rice sheath blight pathogen Rhizoctonia solani AG-1 IA from India. Eur. J. Plant Pathol. 112:113-121.
37. Liu, Y. C., Double, M. L., MacDonald, W. L., Cortesi, P., and Milgroom, M. G. 1996. Diversity and multilocus genetic structure in populations of Cryphonectria parasitica. Phytopathology 86:1344-1351.
38. Luikart, G., and Cornuet, J.-M. 1998. Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conserv. Biol. 12:228-237.
39. MacNish, G. C., Carling, D. E., and Brainard, K. A. 1993. Characterization of Rhizoctonia solani AG-8 from bare patches by pectic enzyme (zymogram) and anastomosis techniques. Phytopathology 83:922-927.
40. Manly, B. F. J. 1991. Randomization and Monte Carlo methods in biology. Chapman & Hall, London.
41. Marchetti, M. A., and Bollich, C. N. 1991. Quantification of the relationship between sheath blight severity and yield loss in rice. Plant Dis. 75:773-775.
42. Matsumoto, M. 2002. Trials of direct detection and identification of Rhizoctonia solani AG 1 and AG 2 subgroups using specifically primed PCR analysis. Mycoscience 43:185-189.
43. Maynard Smith, J., Smith, N. H., O'Rourke, M., and Spratt, B. G. 1993. How clonal are bacteria? PNAS 90:4384-4388.
44. McDonald, B. A., and Linde, C. 2002. Pathogen population genetics, evolutionary potential, and durable resistance. Annu. Rev. Phytopathol. 40:349-379.
45. McDonald, B. A., and Linde, C. 2002. The population genetics of plant pathogens and breeding strategies for durable resistance. Euphytica 124:163-180.
46. Meirmans, P. G., and Van Tienderen, P. H. 2004. GenoType and GenoDive: Two programs for the analysis of genetic diversity of asexual organisms. Mol. Ecol. Notes 4:792-794.
47. Meyer, M. C. 2002. Caracterização de Rhizoctonia solani Kühn, agente causal da mela da soja (Glycine max [L.] Merrill), seleção de genótipos e controle químico, Proteção de Plantas, Faculdade de Ciências Agronômicas, Universidade Estadual Paulista "Júlio de Mesquita Filho," Botucatu, SP, Brazil.
48. Meyer, M. C., Bueno, C. J., de Souza, N. L., and Yorinori, J. T. 2006. Effect of doses of fungicides and plant resistance activators on the control of Rhizoctonia foliar blight of soybean, and on Rhizoctonia solani AG1-IA in vitro development. Crop Prot. 25:848-854.
49. Milgroom, M. G. 1996. Recombination and the multilocus structure of fungal populations. Annu. Rev. Phytopathol. 34:457-477.
50. Naito, S. 1996. Basidiospore dispersal and survival. Pages 197-206 in: Rhizoctonia Species: Taxonomy, Molecular Biology, Ecology, Pathology and Disease Control. B. Sneh, S. Jabaji-Hare, S. Neate and G. Dijst, eds. Kluwer Academic, Dordrecht, the Netherlands.
51. Naito, S. 2006. Ecological studies on teleomorphic and anamorphic stages in Rhizoctonia fungi. J. Gen. Plant Pathol. 72:400-403.
52. Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a number of individuals. Genetics 89:538-590.
53. Petit, R. J., El Mousadik, A., and Pons, O. 1998. Identifying populations for conservation on the basis of genetic markers. Conserv. Biol. 12:844-855.
54. Piry, S., Luikart, G., and Cornuet, J. M. 1999. BOTTLENECK: A computer program for detecting recent reductions in the effective size using allele frequency data. J. Hered. 90:502-503.
55. Pritchard, J. K., Stephens, M., and Donnelly, P. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
56. Raymond, M., and Rousset, F. 1995. GENEPOP (Version 1.2): Population genetics software for exact tests and ecumenicism. J. Hered. 86:248-249.
57. Rosewich, U. L., Pettway, R. E., McDonald, B. A., and Kistler, H. C. 1999. High levels of gene flow and heterozygote excess characterize Rhizoctonia solani AG-1 IA (Thanatephorus cucumeris) from Texas. Fungal Genet. Biol. 28:148-159.
58. Sato, G. S., and Moori, R. G. 2003. The impact of the biotechnology in the Brazilian seed industry. Informações Econômicas-Instituto de Economia Agrícola 33:44-53.
59. Simon, M. F., and Garagorry, F. L. 2005. The expansion of agriculture in the Brazilian Amazon. Environ. Conserv. 32:203-212.
60. Slatkin, M. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genetics 139:457-462.
61. Stoddart, J. A., and Taylor, J. F. 1988. Genotype diversity: Estimation and prediction in samples. Genetics 118:705-711.
62. Taheri, P., Gnanamanickam, S., and Hofte, M. 2007. Characterization, genetic structure, and pathogenicity of Rhizoctonia spp. associated with rice sheath diseases in India. Phytopathology 97:373-383.
63. Toda, T., and Hyakumachi, M. 2006. Heterokaryon formation in Thanatephorus cucumeris anastomosis group 2-2 IV. Mycologia 98:726-736.
64. Weir, B. S. 1996. Genetic Data Analysis. 2 ed. Sinauer Associates, Sunderland, MA.
65. Weir, B. S., and Cockerman, C. C. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
66. Wrather, J. A., Anderson, T. R., Arsyad, D. M., Gai, J., Ploper, L. D., Porta-Puglia, A., Ram, H. H., and Yorinori, J. T. 1997. Soybean disease loss estimates for the top 10 soybean producing countries in 1994. Plant Dis. 81:107-110.
67. Xu, J. 2005. Cost of interacting with sexual partners in a facultative sexual microbe. Genetics 171:1597-1604.
68. Yang, H. A., Tommerup, I. C., Sivasithamparam, K., and O'Brien, P. A. 1992. Heterokaryon formation with homokaryons derived from protoplasts of Rhizoctonia solani anastomosis group eight. Exp. Mycol. 16:268-278.
69. Yang, X. B., Berggren, G. T., and Snow, J. T. 1990. Seedling infection of soybean by isolates of Rhizoctonia solani AG-1, the causal agent of aerial blight and web blight of soybean. Plant Dis. 74:485-488.
70. Yorinori, J. T. 1998. Estratégias de controle das doenças da soja. Correio Agrícola 2:8-12.
71. Zala, M., McDonald, B. A., Bernardes de Assis, J., Ciampi, M. B., Storari, M., Peyer, P., and Ceresini, P. C. 2008. Highly polymorphic microsatellite loci in the maize- and rice-infecting fungal pathogen Rhizoctonia solani anastomosis group 1 IA. Mol. Ecol. Resour. 8:686-689.
72. Zhan, J., Pettway, R. E., and McDonald, B. A. 2003. The global genetic structure of the wheat pathogen Mycosphaerella graminicola is characterized by high nuclear diversity, low mitochondrial diversity, regular recombination, and gene flow. Fungal Genet. Biol. 38:286-297.