메뉴 건너뛰기




Volumn 2066, Issue , 2001, Pages 111-125

EugÉne: An eukaryotic gene finder that combines several sources of evidence

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; BIOLOGY; DIRECTED GRAPHS; GENES; INFORMATION SCIENCE;

EID: 84959057192     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/3-540-45727-5_10     Document Type: Conference Paper
Times cited : (76)

References (21)
  • 2
    • 0032531836 scopus 로고    scopus 로고
    • Prediction of locally optimal splice sites in plant pre-mRNA with application to gene identification in Arabidopsis thaliana genomic DNA
    • V. Brendel and J. Klefie, (1998), Prediction of locally optimal splice sites in plant pre-mRNA with application to gene identification in Arabidopsis thaliana genomic DNA, Nucleic Acids Res., 26, pp. 4749-4757.
    • (1998) Nucleic Acids Res , vol.26 , pp. 4749-4757
    • Brendel, V.1    Klefie, J.2
  • 3
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic dna
    • C. Burge and S. Karlin, Apr 1997, Prediction of complete gene structures in human genomic dna., J Mol Biol, 268, pp. 78-94.
    • (1997) J Mol Biol , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 5
    • 0031732094 scopus 로고    scopus 로고
    • A computer program for aligning a cdna sequence with a genomic dna sequence
    • Sept
    • L. Florea, G. Hartzell, Z. Zhang, G. Rubin, and W. Miller, Sept. 1998, A computer program for aligning a cdna sequence with a genomic dna sequence, Genome Res, 8, pp. 967-974.
    • (1998) Genome Res , vol.8 , pp. 967-974
    • Florea, L.1    Hartzell, G.2    Zhang, Z.3    Rubin, G.4    Miller, W.5
  • 6
    • 0031573382 scopus 로고    scopus 로고
    • A tool for analyzing and annotating genomic sequences
    • Nov
    • X. Huang, M. Adams, H. Zhou, and A. Kerlavage, Nov 1997, A tool for analyzing and annotating genomic sequences., Genomics, 46, pp. 37-45.
    • (1997) Genomics , vol.46 , pp. 37-45
    • Huang, X.1    Adams, M.2    Zhou, H.3    Kerlavage, A.4
  • 7
    • 0029928682 scopus 로고    scopus 로고
    • Cleaning the genbank arabidopsis thaliana data set
    • P. Korning, S. Hebsgaard, P. Rouze, and S. Brunak, (1996), Cleaning the genbank arabidopsis thaliana data set, Nucleic Acids Res., 24, pp. 316-320.
    • (1996) Nucleic Acids Res , vol.24 , pp. 316-320
    • Korning, P.1    Hebsgaard, S.2    Rouze, P.3    Brunak, S.4
  • 8
    • 0031300843 scopus 로고    scopus 로고
    • Integrating database homology in a probabilistic gene structure model, in Pacific Symp
    • D. Kulp, D. Haussler, M. Reese, and F. Eeckman, (1997), Integrating database homology in a probabilistic gene structure model., in Pacific Symp. Biocomputing, pp. 232-44.
    • (1997) Biocomputing , pp. 232-244
    • Kulp, D.1    Haussler, D.2    Reese, M.3    Eeckman, F.4
  • 9
    • 0032519353 scopus 로고    scopus 로고
    • GeneMark.Hmm: New solutions for gene finding
    • A. V. Lukashin and M. Borodovsky, (1998), GeneMark.hmm: new solutions for gene finding, Nucleic Acids Res., 26, pp. 1107-1115.
    • (1998) Nucleic Acids Res , vol.26 , pp. 1107-1115
    • Lukashin, A.V.1    Borodovsky, M.2
  • 10
    • 0031761144 scopus 로고    scopus 로고
    • Gene recognition by combination of several gene-finding programs
    • K. Murakami and T. Takagi, (1998), Gene recognition by combination of several gene-finding programs, BioInformatics, 14, pp. 665-675.
    • (1998) Bioinformatics , vol.14 , pp. 665-675
    • Murakami, K.1    Takagi, T.2
  • 12
    • 0030627982 scopus 로고    scopus 로고
    • Neural network prediction of translation in- itiation sites in eukaryotes: Prespectives for EST and genome analysis, in Proc of ISMB'97
    • A. Pedersen and H. Nielsen, (1997), Neural network prediction of translation in- itiation sites in eukaryotes: prespectives for EST and genome analysis, in Proc of ISMB'97, AAAI Press, pp. 226-233.
    • (1997) AAAI Press , pp. 226-233
    • Pedersen, A.1    Nielsen, H.2
  • 13
    • 0032456609 scopus 로고    scopus 로고
    • Assembling genes from predicted exons in linear time with dynamic programming
    • G. R, Winter
    • G. R, Winter 1998, Assembling genes from predicted exons in linear time with dynamic programming., Journal of Computational Biology, 5, pp. 681-702.
    • (1998) Journal of Computational Biology , vol.5 , pp. 681-702
  • 14
    • 0024610919 scopus 로고
    • A tutorial on hidden markov models and selected application in speech recognition, Proc
    • L. Rabiner, (1989), A tutorial on hidden markov models and selected application in speech recognition, Proc. IEEE, 77, pp. 257-286.
    • (1989) IEEE , vol.77 , pp. 257-286
    • Rabiner, L.1
  • 15
    • 0024610919 scopus 로고
    • A tutorial on hidden markov models and selected applica- tions in speech recognition
    • L. R. Rabiner, (1989), A tutorial on hidden markov models and selected applica- tions in speech recognition, Proc of the IEEE, 77, pp. 257-286.
    • (1989) Proc of the IEEE , vol.77 , pp. 257-286
    • Rabiner, L.R.1
  • 16
    • 0029955046 scopus 로고    scopus 로고
    • Gene structure prediction using information on homologous protein sequence
    • I. Rogozin, L. Milanesi, and N. Kolchanov, Jun 1996, Gene structure prediction using information on homologous protein sequence., Comput. Appl. Biosci., 12, pp. 161-70.
    • (1996) Comput. Appl. Biosci , vol.12 , pp. 161-170
    • Rogozin, I.1    Milanesi, L.2    Kolchanov, N.3
  • 17
    • 0032518163 scopus 로고    scopus 로고
    • Microbial gene identification using interpolated Markov models
    • S. L. Salzberg, A. L. Delcher, S. Kasif, and O. White, (1998), Microbial gene identification using interpolated Markov models, Nucleic Acids Res., 26, pp. 544- 548.
    • (1998) Nucleic Acids Res , vol.26
    • Salzberg, S.L.1    Delcher, A.L.2    Kasif, S.3    White, O.4
  • 18
    • 84976237712 scopus 로고
    • DNA and protein sequence analysis: A practical ap- proach, IRL Press, Oxford
    • E. Snyder and G. Stormo, DNA and protein sequence analysis: a practical ap- proach, IRL Press, Oxford, (1995), Ch. Identifying genes in genomic DNA sequen- ces, pp. 209-224.
    • (1995) Ch. Identifying Genes in Genomic DNA Sequen- Ces , pp. 209-224
    • Snyder, E.1    Stormo, G.2
  • 19
    • 0030878280 scopus 로고    scopus 로고
    • A branch-point consensus from Arabidopsis found by non circular analysis allows for better prediction of acceptor sites
    • N. Tolstrup et al., (1997), A branch-point consensus from Arabidopsis found by non circular analysis allows for better prediction of acceptor sites, Nucleic Acids Res., 25, pp. 3159-3163.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3159-3163
    • Tolstrup, N.1
  • 20
    • 0034129194 scopus 로고    scopus 로고
    • Optimal spliced alignment of homo- logous cDNA to a genomic DNA template
    • J Usuka, W Zhu and V Brendel., (2000), Optimal spliced alignment of homo- logous cDNA to a genomic DNA template, Bioinformatics, 16, pp. 203-211.
    • (2000) Bioinformatics , vol.16 , pp. 203-211
    • Usuka, J.1    Zhu, W.2    Brendel, V.3
  • 21
    • 0029814920 scopus 로고    scopus 로고
    • A segment-based dynamic programming algorithm for predicting gene structure
    • T. D. Wu, (1996), A segment-based dynamic programming algorithm for predicting gene structure, Journal of Computational Biology, 3, pp. 375-394.
    • (1996) Journal of Computational Biology , vol.3 , pp. 375-394
    • Wu, T.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.