SAHBNET, an accessible surface-based elastic network: An application to membrane protein

International Journal of Molecular Sciences

Volumn 14, Issue 6, 2013, Pages 11510-11526

  Dony, Nicolas ^a   Crowet, Jean Marc ^a   Joris, Bernard ^a   Brasseur, Robert ^a   Lins, Laurence ^a  

^a UNIVERSITY OF LIÈGE   (Belgium)

Author keywords

Accessible surface; Coarse grained; Elastic network; Hydrogen bond; Lipids; MARTINI forcefield; Membrane; Molecular dynamics; Protein structure

Indexed keywords

LIPOPROTEIN; MEMBRANE PROTEIN; OUTER MEMBRANE LIPOPROTEIN WZA; RNA DIRECTED RNA POLYMERASE; UNCLASSIFIED DRUG; ACTIN BINDING PROTEIN; CARBOXYPEPTIDASE TRANSPEPTIDASE; DNA DIRECTED RNA POLYMERASE; ESCHERICHIA COLI PROTEIN; OUTER MEMBRANE PROTEIN; PENICILLIN BINDING PROTEIN; PENICILLIN-BINDING PROTEIN 1B, E COLI; PEPTIDOGLYCAN GLYCOSYLTRANSFERASE; SOLVENT; VILLIN; WATER; WZA PROTEIN, E COLI;

ARTICLE; CALIBRATION; COMPLEX FORMATION; ELNEDYN MODEL; INTERMETHOD COMPARISON; LIPID BILAYER; MOLECULAR DYNAMICS; PROTEIN DETERMINATION; PROTEIN INTERACTION; PROTEIN STABILITY; PROTEIN STRUCTURE; SIMULATION; SURFACE ACCESSIBILITY HYDROGEN BOND ELASTIC NETWORK; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; ELASTICITY; ENZYMOLOGY; HYDROGEN BOND; PROTEIN TERTIARY STRUCTURE; RHINOVIRUS; SOLUBILITY; SURFACE PROPERTY;

BACTERIAL OUTER MEMBRANE PROTEINS; CALIBRATION; COMPUTER SIMULATION; DNA-DIRECTED RNA POLYMERASES; ELASTICITY; ESCHERICHIA COLI PROTEINS; HYDROGEN BONDING; MEMBRANE PROTEINS; MICROFILAMENT PROTEINS; MODELS, MOLECULAR; PENICILLIN-BINDING PROTEINS; PEPTIDOGLYCAN GLYCOSYLTRANSFERASE; PROTEIN STRUCTURE, TERTIARY; RHINOVIRUS; SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE; SOLUBILITY; SOLVENTS; SURFACE PROPERTIES; WATER;

EID: 84879010367     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms140611510     Document Type: Article

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