메뉴 건너뛰기




Volumn 41, Issue D1, 2013, Pages

PDBTM: Protein data bank of transmembrane proteins after 8 years

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN;

EID: 84874677954     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks1169     Document Type: Article
Times cited : (229)

References (31)
  • 2
    • 54849203800 scopus 로고    scopus 로고
    • Crystal structures of a second G proteincoupled receptor: Triumphs and implications
    • Parrill, A.L. (2008) Crystal structures of a second G proteincoupled receptor: triumphs and implications. ChemMedChem, 3, 1021-1023.
    • (2008) ChemMedChem , vol.3 , pp. 1021-1023
    • Parrill, A.L.1
  • 5
    • 10244252813 scopus 로고    scopus 로고
    • Transmembrane proteins in the Protein Data Bank: Identification and classification
    • Tusnády, G.E., Dosztányi, Z. and Simon, I. (2004) Transmembrane proteins in the Protein Data Bank: identification and classification. Bioinformatics, 20, 2964-2972.
    • (2004) Bioinformatics , vol.20 , pp. 2964-2972
    • Tusnády, G.E.1    Dosztányi, Z.2    Simon, I.3
  • 6
    • 13444280419 scopus 로고    scopus 로고
    • PDB-TM: Selection and membrane localization of transmembrane proteins in the protein data bank
    • Tusnády, G.E., Dosztányi, Z. and Simon, I. (2005) PDB-TM: selection and membrane localization of transmembrane proteins in the protein data bank. Nucleic Acids Res., 33, D275-D278.
    • (2005) Nucleic Acids Res. , vol.33
    • Tusnády, G.E.1    Dosztányi, Z.2    Simon, I.3
  • 7
    • 16344362822 scopus 로고    scopus 로고
    • TMDET: Web server for detecting transmembrane regions of proteins by using their 3D coordinates
    • Tusnády, G.E., Dosztányi, Z. and Simon, I. (2005) TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates. Bioinformatics, 21, 1276-1277.
    • (2005) Bioinformatics , vol.21 , pp. 1276-1277
    • Tusnády, G.E.1    Dosztányi, Z.2    Simon, I.3
  • 8
    • 84861060898 scopus 로고    scopus 로고
    • OPM database and PPM web server: Resources for positioning of proteins in membranes
    • Lomize, M.A., Pogozheva, I.D., Joo, H., Mosberg, H.I. and Lomize, A.L. (2012) OPM database and PPM web server: resources for positioning of proteins in membranes. Nucleic Acids Res., 40, D370-D376.
    • (2012) Nucleic Acids Res. , vol.40
    • Lomize, M.A.1    Pogozheva, I.D.2    Joo, H.3    Mosberg, H.I.4    Lomize, A.L.5
  • 9
    • 33744490360 scopus 로고    scopus 로고
    • Positioning of proteins in membranes: A computational approach
    • Lomize, A.L., Pogozheva, I.D., Lomize, M.A. and Mosberg, H.I. (2006) Positioning of proteins in membranes: a computational approach. Protein Sci., 15, 1318-1333.
    • (2006) Protein Sci. , vol.15 , pp. 1318-1333
    • Lomize, A.L.1    Pogozheva, I.D.2    Lomize, M.A.3    Mosberg, H.I.4
  • 10
    • 57049124381 scopus 로고    scopus 로고
    • CGDB: A database of membrane protein/lipid interactions by coarse-grained molecular dynamics simulations
    • Chetwynd, A.P., Scott, K.A., Mokrab, Y. and Sansom, M.S.P. (2008) CGDB: a database of membrane protein/lipid interactions by coarse-grained molecular dynamics simulations. Mol. Membr. Biol., 25, 662-669.
    • (2008) Mol. Membr. Biol. , vol.25 , pp. 662-669
    • Chetwynd, A.P.1    Scott, K.A.2    Mokrab, Y.3    Sansom, M.S.P.4
  • 11
    • 78651268103 scopus 로고    scopus 로고
    • OMPdb: A database of beta-barrel outer membrane proteins from Gram-negative bacteria
    • Tsirigos, K.D., Bagos, P.G. and Hamodrakas, S.J. (2011) OMPdb: a database of beta-barrel outer membrane proteins from Gram-negative bacteria. Nucleic Acids Res., 39, D324-D331.
    • (2011) Nucleic Acids Res. , vol.39
    • Tsirigos, K.D.1    Bagos, P.G.2    Hamodrakas, S.J.3
  • 16
    • 33846085447 scopus 로고    scopus 로고
    • TMBETA-GENOME: Database for annotated beta-barrel membrane proteins in genomic sequences
    • Gromiha, M.M., Yabuki, Y., Kundu, S., Suharnan, S. and Suwa, M. (2007) TMBETA-GENOME: database for annotated beta-barrel membrane proteins in genomic sequences. Nucleic Acids Res., 35, D314-D316.
    • (2007) Nucleic Acids Res. , vol.35
    • Gromiha, M.M.1    Yabuki, Y.2    Kundu, S.3    Suharnan, S.4    Suwa, M.5
  • 17
    • 84865176043 scopus 로고    scopus 로고
    • Membrane protein structural bioinformatics
    • Nugent, T. and Jones, D.T. (2011) Membrane protein structural bioinformatics. J. Struct. Biol., 179, 327-337.
    • (2011) J. Struct. Biol. , vol.179 , pp. 327-337
    • Nugent, T.1    Jones, D.T.2
  • 18
    • 0032169688 scopus 로고    scopus 로고
    • PQS: A protein quaternary structure file server
    • Henrick, K. (1998) PQS: a protein quaternary structure file server. Trends Biochem. Sci., 23, 358-361.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 358-361
    • Henrick, K.1
  • 19
    • 34548232365 scopus 로고    scopus 로고
    • Inference of macromolecular assemblies from crystalline state
    • Krissinel, E. and Henrick, K. (2007) Inference of macromolecular assemblies from crystalline state. J. Mol. Biol., 372, 774-797.
    • (2007) J. Mol. Biol. , vol.372 , pp. 774-797
    • Krissinel, E.1    Henrick, K.2
  • 20
    • 17644392830 scopus 로고    scopus 로고
    • TM-align: A protein structure alignment algorithm based on the TM-score
    • Zhang, Y. and Skolnick, J. (2005) TM-align: a protein structure alignment algorithm based on the TM-score. Nucleic Acids Res., 33, 2302-2309.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2302-2309
    • Zhang, Y.1    Skolnick, J.2
  • 22
    • 0035979744 scopus 로고    scopus 로고
    • A refined structure of human aquaporin-1
    • de Groot, B.L., Engel, A. and Grubmüller, H. (2001) A refined structure of human aquaporin-1. FEBS Lett., 504, 206-211.
    • (2001) FEBS Lett. , vol.504 , pp. 206-211
    • De Groot, B.L.1    Engel, A.2    Grubmüller, H.3
  • 24
    • 0037122805 scopus 로고    scopus 로고
    • X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity
    • Dutzler, R., Campbell, E.B., Cadene, M., Chait, B.T. and MacKinnon, R. (2002) X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity. Nature, 415, 287-294.
    • (2002) Nature , vol.415 , pp. 287-294
    • Dutzler, R.1    Campbell, E.B.2    Cadene, M.3    Chait, B.T.4    MacKinnon, R.5
  • 25
    • 4344582448 scopus 로고    scopus 로고
    • Structural themes in ion channels
    • Doyle, D.A. (2004) Structural themes in ion channels. Eur. Biophys. J., 33, 175-179.
    • (2004) Eur. Biophys. J. , vol.33 , pp. 175-179
    • Doyle, D.A.1
  • 26
    • 0242405509 scopus 로고    scopus 로고
    • The structures of BtuCD and MscS and their implications for transporter and channel function
    • Bass, R.B., Locher, K.P., Borths, E., Poon, Y., Strop, P., Lee, A. and Rees, D.C. (2003) The structures of BtuCD and MscS and their implications for transporter and channel function. FEBS Lett., 555, 111-115.
    • (2003) FEBS Lett. , vol.555 , pp. 111-115
    • Bass, R.B.1    Locher, K.P.2    Borths, E.3    Poon, Y.4    Strop, P.5    Lee, A.6    Rees, D.C.7
  • 27
    • 0035927420 scopus 로고    scopus 로고
    • Three-dimensional structure of cyanobacterial photosystem I at 2.5 Å resolution
    • Jordan, P., Fromme, P., Witt, H.T., Klukas, O., Saenger, W. and Krauss, N. (2001) Three-dimensional structure of cyanobacterial photosystem I at 2.5 Å resolution. Nature, 411, 909-917.
    • (2001) Nature , vol.411 , pp. 909-917
    • Jordan, P.1    Fromme, P.2    Witt, H.T.3    Klukas, O.4    Saenger, W.5    Krauss, N.6
  • 28
    • 0034831591 scopus 로고    scopus 로고
    • A third crystal form of Wolinella succinogenes quinol: Fumarate reductase reveals domain closure at the site of fumarate reduction
    • Lancaster, C.R., Gross, R. and Simon, J. (2001) A third crystal form of Wolinella succinogenes quinol: fumarate reductase reveals domain closure at the site of fumarate reduction. Eur. J. Biochem., 268, 1820-1827.
    • (2001) Eur. J. Biochem. , vol.268 , pp. 1820-1827
    • Lancaster, C.R.1    Gross, R.2    Simon, J.3
  • 29
    • 0038820376 scopus 로고    scopus 로고
    • AstexViewer: A visualisation aid for structure-based drug design
    • Hartshorn, M.J. (2002) AstexViewer: a visualisation aid for structure-based drug design. J. Comput. Aided Mol. Des., 16, 871-881.
    • (2002) J. Comput. Aided Mol. Des. , vol.16 , pp. 871-881
    • Hartshorn, M.J.1
  • 30
    • 84864491623 scopus 로고    scopus 로고
    • CMWeb: An interactive on-line tool for analysing residue-residue contacts and contact prediction methods
    • Kozma, D., Simon, I. and Tusnády, G.E. (2012) CMWeb: an interactive on-line tool for analysing residue-residue contacts and contact prediction methods. Nucleic Acids Res., 40, W329-W333.
    • (2012) Nucleic Acids Res. , vol.40
    • Kozma, D.1    Simon, I.2    Tusnády, G.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.