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1
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0029120439
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Structure-function of the channel-forming colicins
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Cramer WA, Heymann JB, Schendel SL, Deriy BN, Cohen FS, Elkins PA, Stauffacher CV. Structure-function of the channel-forming colicins. Annu Rev Biophys Biomol Struct. 24:1995;611-641.
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Cramer, W.A.1
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Stroud R. Ion channel forming colicins. Curr Opin Struct Biol. 5:1995;514-520.
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Stroud, R.1
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In vivo and in vitro studies of the inhibition of the channel activity of colicins by gadolinium
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Bonhivers M, Guihard G, Pattus F, Letellier L. In vivo and in vitro studies of the inhibition of the channel activity of colicins by gadolinium. Eur J Biochem. 229:1995;155-163.
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Bonhivers, M.1
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4
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0031022750
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Crystal structure of colicin Ia
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of special interest. The first crystal structure of an entire ion channel-forming colicin molecule reveals a structure in which three functional domains, each unrelated to other protein folds, are connected by ~160 Å long helices. The structure places the determinants of receptor binding in context of three dimensions, over 160 Å from the other domains. This structure, initially reported at 3 Å resolution, has subsequently been extended to 2.3 Å resolution, although this has not yet been reported. The structure shows how the colicin can span the periplasmic space, the location of the TonB box and the nature of its presentation.
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Wiener M, Freymann D, Ghosh P, Stroud RM. Crystal structure of colicin Ia. of special interest Nature. 385:1997;461-464 The first crystal structure of an entire ion channel-forming colicin molecule reveals a structure in which three functional domains, each unrelated to other protein folds, are connected by ~160 Å long helices. The structure places the determinants of receptor binding in context of three dimensions, over 160 Å from the other domains. This structure, initially reported at 3 Å resolution, has subsequently been extended to 2.3 Å resolution, although this has not yet been reported. The structure shows how the colicin can span the periplasmic space, the location of the TonB box and the nature of its presentation.
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Nature
, vol.385
, pp. 461-464
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Wiener, M.1
Freymann, D.2
Ghosh, P.3
Stroud, R.M.4
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5
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0031569404
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The long and short of colicin action: The molecular basis for the biological activity of channel forming colicins
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of outstanding interest. An excellent review from a structural perspective. Crystal structures of the intact colicin la molecule and a channel-forming domain of colicin E1 are cited to illuminate relationships between the molecular structure and biological function of these voltage-dependent channel-forming toxins.
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Gouaux E. The long and short of colicin action: the molecular basis for the biological activity of channel forming colicins. of outstanding interest Structure. 5:1997;313-317 An excellent review from a structural perspective. Crystal structures of the intact colicin la molecule and a channel-forming domain of colicin E1 are cited to illuminate relationships between the molecular structure and biological function of these voltage-dependent channel-forming toxins.
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Structure
, vol.5
, pp. 313-317
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Gouaux, E.1
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6
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0032528046
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Crystal structure of a colicin N fragment suggests a model for toxicity
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Vetter IR, Parker MW, Tucker AD, Lakey JH, Pattus F, Tsemoglou D. Crystal structure of a colicin N fragment suggests a model for toxicity. Structure. 6:1998;863-874.
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Structure
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Vetter, I.R.1
Parker, M.W.2
Tucker, A.D.3
Lakey, J.H.4
Pattus, F.5
Tsemoglou, D.6
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7
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0026545681
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Formation of a gated channel by a ligand-specific transport protein in the bacterial outer membrane
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Rutz JM, Liu J, Lyons JA, Goranson J, Armstrong SK, McIntosh MA, Feix JB, Klebba PE. Formation of a gated channel by a ligand-specific transport protein in the bacterial outer membrane. Science. 258:1992;471-475.
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Rutz, J.M.1
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McIntosh, M.A.6
Feix, J.B.7
Klebba, P.E.8
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8
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0029148090
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Quantification of group A colicin import sites
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Duche D, Letellier L, Geli V, Benedetti H, Baty D. Quantification of group A colicin import sites. J Bacteriol. 177:1995;4935-4939.
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Duche, D.1
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Baty, D.5
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9
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0023691243
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Iron-regulated outer membrane proteins of Escherichia coli K-12 and mechanism of action of catechol-substituted cephalosporins
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Curtis NA, Eisenstadt RL, East SJ, Comford RJ, Walker LA, White AJ. Iron-regulated outer membrane proteins of Escherichia coli K-12 and mechanism of action of catechol-substituted cephalosporins. Antimicrob Agents Chemother. 32:1988;1879-1886.
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Curtis, N.A.1
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Comford, R.J.4
Walker, L.A.5
White, A.J.6
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10
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0025344359
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Surface topology of the Escherichia coli K-12 ferric enterobactin receptor
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Murphy CK, Kalve VI, Klebba PE. Surface topology of the Escherichia coli K-12 ferric enterobactin receptor. J Bacteriol. 172:1990;2736-2746.
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Murphy, C.K.1
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11
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0030926805
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Ligand-specific opening of a gated-porin channel in the outer membrane of living bacteria
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of special interest. In an outer membrane receptor co-opted by colicins, a ligand-binding surface loop of FepA, which normally closes its transmembrane channel, exhibited energy-dependent structural changes during iron and toxin (colicin) transport. The changes occur during ligand uptake through the outer membrane and provide experimental evidence that gated-porin channels open and close during membrane transport in vivo.
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Jiang X, Payne MA, Cao Z, Foster SB, Feix JB, Newton SM, Klebba PE. Ligand-specific opening of a gated-porin channel in the outer membrane of living bacteria. of special interest Science. 276:1997;1261-1264 In an outer membrane receptor co-opted by colicins, a ligand-binding surface loop of FepA, which normally closes its transmembrane channel, exhibited energy-dependent structural changes during iron and toxin (colicin) transport. The changes occur during ligand uptake through the outer membrane and provide experimental evidence that gated-porin channels open and close during membrane transport in vivo.
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Science
, vol.276
, pp. 1261-1264
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Jiang, X.1
Payne, M.A.2
Cao, Z.3
Foster, S.B.4
Feix, J.B.5
Newton, S.M.6
Klebba, P.E.7
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12
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0028942302
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Identification of receptor binding sites by competitive peptide mapping: Phages T1, T5, and phi 80 and colicin M bind to the gating loop of FhuA
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Killmann H, Videnov G, Jung G, Schwarz H, Braun V. Identification of receptor binding sites by competitive peptide mapping: phages T1, T5, and phi 80 and colicin M bind to the gating loop of FhuA. J Bacteriol. 177:1995;694-698.
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J Bacteriol
, vol.177
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Killmann, H.1
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Jung, G.3
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Braun, V.5
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13
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0031888244
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Specific in vivo labeling of cell surface-exposed protein loops: Reactive cysteines in the predicted gating loop mark a ferrichrome binding site and a ligand-induced conformational change of the Escherichia coli FhuA protein
-
of special interest. In FhuA, an outer membrane receptor co-opted by colicins, a cysteine residue introduced into the gating loop is used to monitor the structural changes upon binding of ferrichrome. Flow cytometry gave fluorescence signals that indicate that the gating loop of this outer membrane is moved out of the channel by the binding of the normal ligand.
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Bos C, Lorenzen D, Braun V. Specific in vivo labeling of cell surface-exposed protein loops: reactive cysteines in the predicted gating loop mark a ferrichrome binding site and a ligand-induced conformational change of the Escherichia coli FhuA protein. of special interest J Bacteriol. 180:1998;605-613 In FhuA, an outer membrane receptor co-opted by colicins, a cysteine residue introduced into the gating loop is used to monitor the structural changes upon binding of ferrichrome. Flow cytometry gave fluorescence signals that indicate that the gating loop of this outer membrane is moved out of the channel by the binding of the normal ligand.
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J Bacteriol
, vol.180
, pp. 605-613
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Bos, C.1
Lorenzen, D.2
Braun, V.3
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14
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0029805603
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Properties of the FhuA channel in the Escherichia coli outer membrane after deletion of FhuA portions within and outside the predicted gating loop
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Killmann H, Benz R, Braun V. Properties of the FhuA channel in the Escherichia coli outer membrane after deletion of FhuA portions within and outside the predicted gating loop. J Bacteriol. 178:1996;6913-6920.
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Killmann, H.1
Benz, R.2
Braun, V.3
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15
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0028263460
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Energy-coupled colicin transport through the outer membrane of Escherichia coli K-12: Mutated TonB proteins alter receptor activities and colicin uptake
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Traub I, Braun V. Energy-coupled colicin transport through the outer membrane of Escherichia coli K-12: mutated TonB proteins alter receptor activities and colicin uptake. FEMS Microbiol Lett. 119:1994;65-70.
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Traub, I.1
Braun, V.2
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16
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0021946983
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Correlation between degradation and ultrastructure of peptidoglycan during autolysis of Escherichia coli
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Leduc M, Frehel C, van Heijenoort J. Correlation between degradation and ultrastructure of peptidoglycan during autolysis of Escherichia coli. J Bacteriol. 161:1985;627-635.
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Leduc, M.1
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Van Heijenoort, J.3
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18
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0031569354
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A mechanism for toxin insertion into membranes is suggested by the crystal structure of the channel-forming domain of colicin E1
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of outstanding interest. On the basis of the structure of the colicin E1 channel-forming domain, its comparison with the structure of the colicin A domain and the known requirement for initial electrostatic and subsequent hydrophobic interactions, molecular details of the docking, unfolding and insertion of the channel-forming domain into the membrane are proposed.
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Elkins P, Bunker A, Cramer WA, Stauffacher CV. A mechanism for toxin insertion into membranes is suggested by the crystal structure of the channel-forming domain of colicin E1. of outstanding interest Structure. 5:1997;443-458 On the basis of the structure of the colicin E1 channel-forming domain, its comparison with the structure of the colicin A domain and the known requirement for initial electrostatic and subsequent hydrophobic interactions, molecular details of the docking, unfolding and insertion of the channel-forming domain into the membrane are proposed.
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(1997)
Structure
, vol.5
, pp. 443-458
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Elkins, P.1
Bunker, A.2
Cramer, W.A.3
Stauffacher, C.V.4
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19
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0030013037
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Membrane binding of the colicin E1 channel: Activity requires an electrostatic interaction of intermediate magnitude
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Zakharov SD, Heymann JB, Zhang YL, Cramer WA. Membrane binding of the colicin E1 channel: activity requires an electrostatic interaction of intermediate magnitude. Biophys J. 70:1996;2774-2783.
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Zakharov, S.D.1
Heymann, J.B.2
Zhang, Y.L.3
Cramer, W.A.4
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20
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0029983594
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Characterization of electrostatic and nonelectrostatic components of protein - Membrane binding interactions
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Heymann JB, Zakharov SD, Zhang YL, Cramer WA. Characterization of electrostatic and nonelectrostatic components of protein - membrane binding interactions. Biochemistry. 35:1996;2717-2725.
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Biochemistry
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Heymann, J.B.1
Zakharov, S.D.2
Zhang, Y.L.3
Cramer, W.A.4
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21
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0026581661
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Refined structure of the pore-forming domain of colicin A at 24 Å resolution
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Parker MW, Postma JP, Pattus F, Tucker AD, Tsernoglou D. Refined structure of the pore-forming domain of colicin A at 24 Å resolution. J Mol Biol. 224:1996;639-657.
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Parker, M.W.1
Postma, J.P.2
Pattus, F.3
Tucker, A.D.4
Tsernoglou, D.5
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22
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0031007488
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Transmembrane insertion of the colicin Ia hydrophobic hairpin
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of outstanding interest. A series of mutations in colicin Ia introduce cysteine residues, whose labeling is used to define the regions that cross the membrane in order to reach the inserted channel. One mutation renders the effective gating charge pH-independent and relatively small, compared with results for wild-type colicin Ia, so pinpointing the voltage censor.
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Kienker PK, Qiu X, Slatin SL, Finkelstein A, Jakes KS. Transmembrane insertion of the colicin Ia hydrophobic hairpin. of outstanding interest J Membr Biol. 157:1997;27-37 A series of mutations in colicin Ia introduce cysteine residues, whose labeling is used to define the regions that cross the membrane in order to reach the inserted channel. One mutation renders the effective gating charge pH-independent and relatively small, compared with results for wild-type colicin Ia, so pinpointing the voltage censor.
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(1997)
J Membr Biol
, vol.157
, pp. 27-37
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Kienker, P.K.1
Qiu, X.2
Slatin, S.L.3
Finkelstein, A.4
Jakes, K.S.5
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23
-
-
0032488653
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Orientational distribution of alpha-helices in the colicin B and E1 channel domains: A one and two dimensional 15N solid-state NMR investigation in uniaxially aligned phospholipid bilayers
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15N solid-state NMR spectroscopy indicates the orientation of a helices in colicins B and E1 as being parallel to a bilayer surface, and other peptide bonds that align in a transmembrane direction in a region characteristic of transmembrane helical residues. These results provide strong experimental support for the previously suggested 'umbrella' conformation of the closed colicin channel.
-
15N solid-state NMR spectroscopy indicates the orientation of a helices in colicins B and E1 as being parallel to a bilayer surface, and other peptide bonds that align in a transmembrane direction in a region characteristic of transmembrane helical residues. These results provide strong experimental support for the previously suggested 'umbrella' conformation of the closed colicin channel.
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(1998)
Biochemistry
, vol.37
, pp. 16-22
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Lambotte, S.1
Jasperse, P.2
Bechinger, B.3
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24
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0028125986
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Membrane-bound form of the pore-forming domain of colicin A. A neutron scattering study
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Jeanteur D, Pattus F, Timmins PA. Membrane-bound form of the pore-forming domain of colicin A. A neutron scattering study. J Mol Biol. 235:1994;898-907.
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Jeanteur, D.1
Pattus, F.2
Timmins, P.A.3
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25
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0027157448
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Fluorescence energy transfer distance measurements. The hydrophobic helical hairpin of colicin A in the membrane bound state
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Lakey JH, Duche D, Gonzalez-Manas JM, Baty D, Pattus F. Fluorescence energy transfer distance measurements. The hydrophobic helical hairpin of colicin A in the membrane bound state. J Mol Biol. 230:1993;1055-1067.
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Lakey, J.H.1
Duche, D.2
Gonzalez-Manas, J.M.3
Baty, D.4
Pattus, F.5
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26
-
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0027476981
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Colicin Ia inserts into negatively charged membranes at low pH with a tertiary but little secondary structural change
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Mel SF, Stroud RM. Colicin Ia inserts into negatively charged membranes at low pH with a tertiary but little secondary structural change. Biochemistry. 32:1993;2082-2089.
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Biochemistry
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Mel, S.F.1
Stroud, R.M.2
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27
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0030945731
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Identification of a chameleon-like pH-sensitive segment within the colicin E1 channel domain that may serve as the ph-activated trigger for membrane bilater association
-
of outstanding interest. Time-resolved fluorescence anisotropy decay measurements of three single tryptophan mutant proteins, made in the channel-forming fragment of colicin E1, shows that Trp413 and Trp424 report conformational changes associated with the insertion-competent state that resides on protein segment(s) that form the pH-activated trigger of the channel peptide.
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Merrill AR, Steer BA, Prentice GA, Weller MJ, Szabo AG. Identification of a chameleon-like pH-sensitive segment within the colicin E1 channel domain that may serve as the ph-activated trigger for membrane bilater association. of outstanding interest Biochemistry. 36:1997;6874-6884 Time-resolved fluorescence anisotropy decay measurements of three single tryptophan mutant proteins, made in the channel-forming fragment of colicin E1, shows that Trp413 and Trp424 report conformational changes associated with the insertion-competent state that resides on protein segment(s) that form the pH-activated trigger of the channel peptide.
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(1997)
Biochemistry
, vol.36
, pp. 6874-6884
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Merrill, A.R.1
Steer, B.A.2
Prentice, G.A.3
Weller, M.J.4
Szabo, A.G.5
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28
-
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0030001018
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Membrane topology of the colicin A pore-forming domain analyzed by disulfide bond engineering
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Duche D, Izard J, Gonzalez-Manas JM, Parker MW, Crest M, Chartier M, Baty D. Membrane topology of the colicin A pore-forming domain analyzed by disulfide bond engineering. J Biol Chem. 271:1996;15401-15406.
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Duche, D.1
Izard, J.2
Gonzalez-Manas, J.M.3
Parker, M.W.4
Crest, M.5
Chartier, M.6
Baty, D.7
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29
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0028100898
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Identification of a translocated protein segment in a voltage-dependent channel
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Slatin SL, Qiu XQ, Jakes KS, Finkelstein A. Identification of a translocated protein segment in a voltage-dependent channel. Nature. 371:1994;158-161.
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Nature
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Slatin, S.L.1
Qiu, X.Q.2
Jakes, K.S.3
Finkelstein, A.4
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30
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0029872191
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Major transmembrane movement associated with colicin Ia channel gating
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Qiu XQ, Jakes KS, Kienker PK, Finkelstein A, Slatin SL. Major transmembrane movement associated with colicin Ia channel gating. J Gen Physiol. 107:1996;313-328.
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J Gen Physiol
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Qiu, X.Q.1
Jakes, K.S.2
Kienker, P.K.3
Finkelstein, A.4
Slatin, S.L.5
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31
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0031963805
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A novel approach to study the geometry of the water lumen of ion channels: Colicin Ia channels in planar lipid bilayers
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of outstanding interest. The internal structure of the transmembrane channel formed by colicin Ia, based on the determination of channel filling by different nonelectrolyte molecules, determines the 18 Å, diameter on the cis, outside of the membrane, and the 10 Å diameter on the trans, inside surface of the membrane. A constriction with a diameter of 7 Å is located close to the trans entrance.
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Krasilnikov OV, Da Cruz JB, Yuldasheva LN, Varanda WA, Nogueira RA. A novel approach to study the geometry of the water lumen of ion channels: colicin Ia channels in planar lipid bilayers. of outstanding interest J Membr Biol. 161:1998;83-92 The internal structure of the transmembrane channel formed by colicin Ia, based on the determination of channel filling by different nonelectrolyte molecules, determines the 18 Å, diameter on the cis, outside of the membrane, and the 10 Å diameter on the trans, inside surface of the membrane. A constriction with a diameter of 7 Å is located close to the trans entrance.
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(1998)
J Membr Biol
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, pp. 83-92
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Krasilnikov, O.V.1
Da Cruz, J.B.2
Yuldasheva, L.N.3
Varanda, W.A.4
Nogueira, R.A.5
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32
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Ion selectivity of colicin E1: III anion permeability
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Bullock JO, Kolen ER. Ion selectivity of colicin E1: III anion permeability. J Membr Biol. 144:1995;131-145.
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J Membr Biol
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Bullock, J.O.1
Kolen, E.R.2
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0028894205
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Non stochastic distribution of single channels in planar lipid bilayers
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Krasilnikov OV, Merzliak PG, Yuldasheva LN, Nogueira RA, Rodrigues CG. Non stochastic distribution of single channels in planar lipid bilayers. Biochim Biophys Acta. 1233:1995;105-110.
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Krasilnikov, O.V.1
Merzliak, P.G.2
Yuldasheva, L.N.3
Nogueira, R.A.4
Rodrigues, C.G.5
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34
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A carboxy-terminal fragment of colicin Ia forms ion channels
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Ghosh P, Mel SF, Stroud RM. A carboxy-terminal fragment of colicin Ia forms ion channels. J Membr Biol. 134:1993;85-92.
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Ghosh, P.1
Mel, S.F.2
Stroud, R.M.3
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35
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0027231701
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Intramembrane helix-helix interactions as the basis of inhibition of the colicin E1 ion channel by its immunity protein
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Zhang YL, Cramer WA. Intramembrane helix-helix interactions as the basis of inhibition of the colicin E1 ion channel by its immunity protein. J Biol Chem. 268:1993;10176-10184.
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J Biol Chem
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Zhang, Y.L.1
Cramer, W.A.2
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36
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Immunity proteins to pore-forming colicins: Structure-function relationships
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Espesset D, Piet P, Lazdunski C, Geli V. Immunity proteins to pore-forming colicins: structure-function relationships. Mol Microbiol. 13:1994;1111-1120.
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Espesset, D.1
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Lazdunski, C.3
Geli, V.4
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The channel domain of colicin A is inhibited by its immunity protein through direct interaction in the Escherichia coli inner membrane
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Espesset D, Duche D, Baty D, Geli V. The channel domain of colicin A is inhibited by its immunity protein through direct interaction in the Escherichia coli inner membrane. EMBO J. 15:1996;2356-2364.
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Espesset, D.1
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0028817893
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Evidence that the immunity protein inactivates colicin 5 immediately prior to the formation of the transmembrane channel
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Pilsl H, Braun V. Evidence that the immunity protein inactivates colicin 5 immediately prior to the formation of the transmembrane channel. J Bacteriol. 177:1995;6966-6972.
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Pilsl, H.1
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39
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0030614915
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Structure of Bcl-xL-Bak peptide complex: Recognition between regulators of apoptosis
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of outstanding interest. The molecular structure of a complex between the survival protein Bcl-xL and the death-promoting region of the Bcl-2-related protein Bak indicates that the Bak peptide adopts an amphipathic a helix that interacts with the channel-forming Bcl-xL through hydrophobic and electrostatic interactions. This shows the close similarity of the channel-forming colicins - colicin immunity protein system in bacteria, to the molecular system that regulates cell death in eukaryotes.
-
Sattler M, Liang H, Nettesheim D, Meadows RP, Harlan JE, Eberstadt M, Yoon HS, Shuker SB, Chang BS, Minn AJ, et al. Structure of Bcl-xL-Bak peptide complex: recognition between regulators of apoptosis. of outstanding interest Science. 275:1997;983-986 The molecular structure of a complex between the survival protein Bcl-xL and the death-promoting region of the Bcl-2-related protein Bak indicates that the Bak peptide adopts an amphipathic a helix that interacts with the channel-forming Bcl-xL through hydrophobic and electrostatic interactions. This shows the close similarity of the channel-forming colicins - colicin immunity protein system in bacteria, to the molecular system that regulates cell death in eukaryotes.
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(1997)
Science
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Sattler, M.1
Liang, H.2
Nettesheim, D.3
Meadows, R.P.4
Harlan, J.E.5
Eberstadt, M.6
Yoon, H.S.7
Shuker, S.B.8
Chang, B.S.9
Minn, A.J.10
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