-
1
-
-
50949090496
-
Poly A-transcripts expressed in HeLa cells
-
Wu Q, Kim Y C, Lu J, et al. Poly A-transcripts expressed in HeLa cells. PLoS ONE, 2008, 3: e2803.
-
(2008)
PLoS ONE
, vol.3
-
-
Wu, Q.1
Kim, Y.C.2
Lu, J.3
-
2
-
-
21044431735
-
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
-
Cheng J, Kapranov P, Drenkow J, et al. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science, 2005, 308: 1149-1154.
-
(2005)
Science
, vol.308
, pp. 1149-1154
-
-
Cheng, J.1
Kapranov, P.2
Drenkow, J.3
-
3
-
-
0019194020
-
Non-polyadenylated mRNAs from eukaryotes
-
Katinakis P, Slater A, Burdon R. Non-polyadenylated mRNAs from eukaryotes. FEBS Lett, 1980, 116: 1-7.
-
(1980)
FEBS Lett
, vol.116
, pp. 1-7
-
-
Katinakis, P.1
Slater, A.2
Burdon, R.3
-
4
-
-
60149110358
-
Pre-mRNA processing reaches back to transcription and ahead to translation
-
Moore M J, Proudfoot N J. Pre-mRNA processing reaches back to transcription and ahead to translation. Cell, 2009, 136: 688-700.
-
(2009)
Cell
, vol.136
, pp. 688-700
-
-
Moore, M.J.1
Proudfoot, N.J.2
-
5
-
-
0032618597
-
Regulation of mammalian ribosomal gene transcription by RNA polymerase I
-
Grummt I. Regulation of mammalian ribosomal gene transcription by RNA polymerase I. Prog Nucleic Acid Res Mol Biol, 1998, 62: 109-154.
-
(1998)
Prog Nucleic Acid Res Mol Biol
, vol.62
, pp. 109-154
-
-
Grummt, I.1
-
6
-
-
0017855179
-
Synthesis of histone messenger RNAs by RNA polymerase II in nuclei from S phase HeLa S3 cells
-
Detke S, Stein J L, Stein G S. Synthesis of histone messenger RNAs by RNA polymerase II in nuclei from S phase HeLa S3 cells. Nucleic Acids Res, 1978, 5: 1515-1528.
-
(1978)
Nucleic Acids Res
, vol.5
, pp. 1515-1528
-
-
Detke, S.1
Stein, J.L.2
Stein, G.S.3
-
7
-
-
0027475474
-
RNA polymerase III. Genes, factors and transcriptional specificity
-
Willis I M. RNA polymerase III. Genes, factors and transcriptional specificity. Eur J Biochem, 1993, 212: 1-11.
-
(1993)
Eur J Biochem
, vol.212
, pp. 1-11
-
-
Willis, I.M.1
-
8
-
-
61849113891
-
MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
-
Sunwoo H, Dinger M E, Wilusz J E, et al. MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. Genome Res, 2009, 19: 347-359.
-
(2009)
Genome Res
, vol.19
, pp. 347-359
-
-
Sunwoo, H.1
Dinger, M.E.2
Wilusz, J.E.3
-
9
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang E T, Sandberg R, Luo S, et al. Alternative isoform regulation in human tissue transcriptomes. Nature, 2008, 456: 470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
-
10
-
-
66349122954
-
Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing
-
Li J B, Levanon E Y, Yoon J K, et al. Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing. Science, 2009, 324: 1210-1213.
-
(2009)
Science
, vol.324
, pp. 1210-1213
-
-
Li, J.B.1
Levanon, E.Y.2
Yoon, J.K.3
-
11
-
-
79951551684
-
Genomewide characterization of non-polyadenylated RNAs
-
Yang L, Duff M O, Graveley B R, et al. Genomewide characterization of non-polyadenylated RNAs. Genome Biol, 2011, 12: R16.
-
(2011)
Genome Biol
, vol.12
-
-
Yang, L.1
Duff, M.O.2
Graveley, B.R.3
-
12
-
-
21044431735
-
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
-
Cheng J, Kapranov P, Drenkow J, et al. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science, 2005, 308: 1149-1154.
-
(2005)
Science
, vol.308
, pp. 1149-1154
-
-
Cheng, J.1
Kapranov, P.2
Drenkow, J.3
-
13
-
-
84861859517
-
ENCODE wholegenome data in the UCSC Genome Browser: update 2012
-
Rosenbloom K R, Dreszer T R, Long J C, et al. ENCODE wholegenome data in the UCSC Genome Browser: update 2012. Nucleic Acids Res, 2012, 40: D912-D917.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Rosenbloom, K.R.1
Dreszer, T.R.2
Long, J.C.3
-
14
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg S L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 2009, 25: 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
15
-
-
62349130698
-
Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, et al. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol, 2009, 10: R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
-
16
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams B A, Pertea G, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnol, 2010, 28: 511-515.
-
(2010)
Nature Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
-
17
-
-
79957842166
-
Computational methods for transcriptome annotation and quantification using RNA-seq
-
Garber M, Grabherr M G, Guttman M, et al. Computational methods for transcriptome annotation and quantification using RNA-seq. Nat Meth, 2011, 8: 469-477.
-
(2011)
Nat Meth
, vol.8
, pp. 469-477
-
-
Garber, M.1
Grabherr, M.G.2
Guttman, M.3
-
18
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili M N, Trapnell C, Goff L, et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev, 2011, 25: 1915-1927.
-
(2011)
Genes Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
-
19
-
-
79952284127
-
Hallmarks of cancer: the next generation
-
Hanahan D, Weinberg R A. Hallmarks of cancer: the next generation. Cell, 2011, 144: 646-674.
-
(2011)
Cell
, vol.144
, pp. 646-674
-
-
Hanahan, D.1
Weinberg, R.A.2
-
20
-
-
70349859881
-
DNA damage, aging, and cancer
-
Hoeijmakers J HJ. DNA damage, aging, and cancer. N Engl J Med, 2009, 361: 1475-1485.
-
(2009)
N Engl J Med
, vol.361
, pp. 1475-1485
-
-
Hoeijmakers, J.H.J.1
-
21
-
-
79955997241
-
Evaluating the consistency of differential expression of microRNA detected in human cancers
-
Gong X, Wu R H, Wang H W, et al. Evaluating the consistency of differential expression of microRNA detected in human cancers. Mol Cancer Ther, 2011, 10: 752-760.
-
(2011)
Mol Cancer Ther
, vol.10
, pp. 752-760
-
-
Gong, X.1
Wu, R.H.2
Wang, H.W.3
-
22
-
-
70350504453
-
The DNA-damage response in human biology and disease
-
Jackson S P, Bartek J. The DNA-damage response in human biology and disease. Nature, 2009, 461: 1071-1078.
-
(2009)
Nature
, vol.461
, pp. 1071-1078
-
-
Jackson, S.P.1
Bartek, J.2
-
23
-
-
9244239811
-
G1 cell-cycle control and cancer
-
Massagué J. G1 cell-cycle control and cancer. Nature, 2004, 432: 298-306.
-
(2004)
Nature
, vol.432
, pp. 298-306
-
-
Massagué, J.1
-
24
-
-
0035902115
-
Proliferation, cell cycle and apoptosis in cancer
-
Evan G I, Vousden K H. Proliferation, cell cycle and apoptosis in cancer. Nature, 2001, 411: 342-348.
-
(2001)
Nature
, vol.411
, pp. 342-348
-
-
Evan, G.I.1
Vousden, K.H.2
-
25
-
-
75549083388
-
HLungDB: an integrated database of human lung cancer research
-
Wang L S, Xiong Y Y, Sun Y H, et al. HLungDB: an integrated database of human lung cancer research. Nucleic Acids Res, 2010, 38: D665-D669.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Wang, L.S.1
Xiong, Y.Y.2
Sun, Y.H.3
-
26
-
-
45749140422
-
Gene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survival
-
Landi M T, Dracheva T, Rotunno M, et al. Gene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survival. PLoS ONE, 2008, 3: e1651.
-
(2008)
PLoS ONE
, vol.3
-
-
Landi, M.T.1
Dracheva, T.2
Rotunno, M.3
-
27
-
-
58149349978
-
Gene expression profiling for molecular distinction and characterization of laser captured primary lung cancers
-
Rohrbeck A, Neukirchen J, Rosskopf M, et al. Gene expression profiling for molecular distinction and characterization of laser captured primary lung cancers. J Transl Med, 2008, 6: 69.
-
(2008)
J Transl Med
, vol.6
, pp. 69
-
-
Rohrbeck, A.1
Neukirchen, J.2
Rosskopf, M.3
-
28
-
-
63449140725
-
Genomic profiles associated with early micrometastasis in lung cancer: relevance of 4q deletion
-
Wrage M, Ruosaari S, Eijk P P, et al. Genomic profiles associated with early micrometastasis in lung cancer: relevance of 4q deletion. Clin Cancer Res, 2009, 15: 1566-1574.
-
(2009)
Clin Cancer Res
, vol.15
, pp. 1566-1574
-
-
Wrage, M.1
Ruosaari, S.2
Eijk, P.P.3
-
29
-
-
52149083002
-
Effects of 4E-BP1 expression on hypoxic cell cycle inhibition and tumor cell proliferation and survival
-
Barnhart B C, Lam J C, Young R M, et al. Effects of 4E-BP1 expression on hypoxic cell cycle inhibition and tumor cell proliferation and survival. Cancer Biol Ther, 2008, 7: 1441-1449.
-
(2008)
Cancer Biol Ther
, vol.7
, pp. 1441-1449
-
-
Barnhart, B.C.1
Lam, J.C.2
Young, R.M.3
-
30
-
-
77954296394
-
4E-BP1 is a key effector of the oncogenic activation of the AKT and ERK signaling pathways that integrates their function in tumors
-
She Q B, Halilovic E, Ye Q, et al. 4E-BP1 is a key effector of the oncogenic activation of the AKT and ERK signaling pathways that integrates their function in tumors. Cancer Cell, 2010, 18: 39-51.
-
(2010)
Cancer Cell
, vol.18
, pp. 39-51
-
-
She, Q.B.1
Halilovic, E.2
Ye, Q.3
-
31
-
-
34250308322
-
Apoptosis: a review of programmed cell death
-
Elmore S. Apoptosis: a review of programmed cell death. Toxicol Pathol, 2007, 35: 495-516.
-
(2007)
Toxicol Pathol
, vol.35
, pp. 495-516
-
-
Elmore, S.1
-
32
-
-
33947696052
-
NK cells and cancer
-
Zamai L, Ponti C, Mirandola P, et al. NK cells and cancer. J Immunol, 2007, 178: 4011-4016.
-
(2007)
J Immunol
, vol.178
, pp. 4011-4016
-
-
Zamai, L.1
Ponti, C.2
Mirandola, P.3
-
34
-
-
77955868506
-
Computational solutions to large-scale data management and analysis
-
Schadt E E, Linderman M D, Sorenson J, et al. Computational solutions to large-scale data management and analysis. Nat Rev Genet, 2010, 11: 647-657.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 647-657
-
-
Schadt, E.E.1
Linderman, M.D.2
Sorenson, J.3
-
35
-
-
80053550915
-
Unbiased parallel detection of viral pathogens in clinical samples by use of a metagenomic approach
-
Yang J, Yang F, Ren L, et al. Unbiased parallel detection of viral pathogens in clinical samples by use of a metagenomic approach. J Clin Microbiol, 2011, 49: 3463-3469.
-
(2011)
J Clin Microbiol
, vol.49
, pp. 3463-3469
-
-
Yang, J.1
Yang, F.2
Ren, L.3
-
36
-
-
84876152425
-
Systematic study of human long intergenic non-coding RNAs and their impact on cancer
-
Sun L, Luo H, Liao Q, et al. Systematic study of human long intergenic non-coding RNAs and their impact on cancer. Sci China Life Sci, 2013, 56: 324-334.
-
(2013)
Sci China Life Sci
, vol.56
, pp. 324-334
-
-
Sun, L.1
Luo, H.2
Liao, Q.3
-
37
-
-
38049155825
-
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
-
Yu W, Gius D, Onyango P, et al. Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature, 2008, 451: 202-206.
-
(2008)
Nature
, vol.451
, pp. 202-206
-
-
Yu, W.1
Gius, D.2
Onyango, P.3
-
38
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
Huarte M, Guttman M, Feldser D, et al. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell, 2010, 142: 409-419.
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
-
39
-
-
81355142141
-
Non-coding RNAs in human disease
-
Esteller M. Non-coding RNAs in human disease. Nat Rev Genet, 2011, 12: 861-874.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 861-874
-
-
Esteller, M.1
-
40
-
-
79961202865
-
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
-
Prensner J R, Iyer M K, Balbin O A, et al. Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. Nat Biotechnol, 2011, 29: 742-749.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 742-749
-
-
Prensner, J.R.1
Iyer, M.K.2
Balbin, O.A.3
-
41
-
-
84860742355
-
NONCODE v3.0: integrative annotation of long noncoding RNAs
-
Bu D C, Yu K T, Sun S, et al. NONCODE v3. 0: integrative annotation of long noncoding RNAs. Nucleic Acids Res, 2012, 40: D210-D215.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Bu, D.C.1
Yu, K.T.2
Sun, S.3
-
42
-
-
84875417100
-
Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks
-
Guo X L, Gao L, Liao Q, et al. Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks. Nucleic Acids Res, 2013, 41: e35.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Guo, X.L.1
Gao, L.2
Liao, Q.3
-
43
-
-
79959949911
-
ncFANs: a web server for functional annotation of long non-coding RNAs
-
Liao Q, Xiao H, Bu D C, et al. ncFANs: a web server for functional annotation of long non-coding RNAs. Nucleic Acids Res, 2011, 39: W118-W124.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Liao, Q.1
Xiao, H.2
Bu, D.C.3
-
44
-
-
79956010263
-
Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network
-
Liao Q, Liu C N, Yuan X Y, et al. Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network. Nucleic Acids Res, 2011, 39: 3864-3878.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3864-3878
-
-
Liao, Q.1
Liu, C.N.2
Yuan, X.Y.3
|