-
1
-
-
33749537080
-
Principles and effects of microRNA-mediated post-transcriptional gene regulation
-
Engels BM, Hutvagner G. Principles and effects of microRNA-mediated post-transcriptional gene regulation. Oncogene 2006;25:6163-9.
-
(2006)
Oncogene
, vol.25
, pp. 6163-6169
-
-
Engels, B.M.1
Hutvagner, G.2
-
2
-
-
70349320158
-
Causes and consequences of microRNA dysregulation in cancer
-
Croce CM. Causes and consequences of microRNA dysregulation in cancer. Nat Rev Genet 2009;10:704-14.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 704-714
-
-
Croce, C.M.1
-
3
-
-
33750370444
-
MicroRNA signatures in human cancers
-
Calin GA, Croce CM. MicroRNA signatures in human cancers. Nat Rev Cancer 2006;6:857-66.
-
(2006)
Nat Rev Cancer
, vol.6
, pp. 857-866
-
-
Calin, G.A.1
Croce, C.M.2
-
4
-
-
33747876113
-
MicroRNA-cancer connection: The beginning of a new tale
-
Calin GA, Croce CM. MicroRNA-cancer connection: the beginning of a new tale. Cancer Res 2006;66:7390-4.
-
(2006)
Cancer Res
, vol.66
, pp. 7390-7394
-
-
Calin, G.A.1
Croce, C.M.2
-
5
-
-
77957361864
-
Targeting microRNAs in cancer: Rationale, strategies and challenges
-
Garzon R, Marcucci G, Croce CM. Targeting microRNAs in cancer: rationale, strategies and challenges. Nat Rev Drug Discov 2010;9:775-89.
-
(2010)
Nat Rev Drug Discov
, vol.9
, pp. 775-789
-
-
Garzon, R.1
Marcucci, G.2
Croce, C.M.3
-
6
-
-
34548230885
-
Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas
-
Calin GA, Liu CG, Ferracin M, Hyslop T, Spizzo R, Sevignani C, et al. Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas. Cancer Cell 2007;12:215-29.
-
(2007)
Cancer Cell
, vol.12
, pp. 215-229
-
-
Calin, G.A.1
Liu, C.G.2
Ferracin, M.3
Hyslop, T.4
Spizzo, R.5
Sevignani, C.6
-
7
-
-
38749089854
-
MicroRNA expression profiles associated with prognosis and therapeuticoutcomeincolonadenocarcinoma
-
Schetter AJ, Leung SY, Sohn JJ, Zanetti KA, Bowman ED, Yanaihara N, et al. MicroRNA expression profiles associated with prognosis and therapeuticoutcomeincolonadenocarcinoma.JAMA2008;299:425-36.
-
(2008)
JAMA
, vol.299
, pp. 425-436
-
-
Schetter, A.J.1
Leung, S.Y.2
Sohn, J.J.3
Zanetti, K.A.4
Bowman, E.D.5
Yanaihara, N.6
-
8
-
-
71549125896
-
Human colon cancer profiles show differential microRNA expression depending on mismatch repair status and are characteristic of undifferentiated proliferative states
-
Sarver AL, French AJ, Borralho PM, Thayanithy V, Oberg AL, Silverstein KA, et al. Human colon cancer profiles show differential microRNA expression depending on mismatch repair status and are characteristic of undifferentiated proliferative states. BMC Cancer 2009;9:401.
-
(2009)
BMC Cancer
, vol.9
, pp. 401
-
-
Sarver, A.L.1
French, A.J.2
Borralho, P.M.3
Thayanithy, V.4
Oberg, A.L.5
Silverstein, K.A.6
-
9
-
-
33144490646
-
A microRNA expression signature of human solid tumors defines cancer gene targets
-
Volinia S, Calin GA, Liu CG, Ambs S, Cimmino A, Petrocca F, et al. A microRNA expression signature of human solid tumors defines cancer gene targets. Proc Natl Acad Sci U S A 2006;103:2257-61.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 2257-2261
-
-
Volinia, S.1
Calin, G.A.2
Liu, C.G.3
Ambs, S.4
Cimmino, A.5
Petrocca, F.6
-
10
-
-
75249107416
-
Relation between microRNA expression and progression and prognosis of gastric cancer: A microRNA expression analysis
-
Ueda T, Volinia S, Okumura H, Shimizu M, Taccioli C, Rossi S, et al. Relation between microRNA expression and progression and prognosis of gastric cancer: a microRNA expression analysis. Lancet Oncol 2010;11:136-46.
-
(2010)
Lancet Oncol
, vol.11
, pp. 136-146
-
-
Ueda, T.1
Volinia, S.2
Okumura, H.3
Shimizu, M.4
Taccioli, C.5
Rossi, S.6
-
11
-
-
70049085160
-
Towards the definition of prostate cancer-related microRNAs: Where are we now?
-
Gandellini P, Folini M, Zaffaroni N. Towards the definition of prostate cancer-related microRNAs: where are we now? Trends Mol Med 2009;15:381-90.
-
(2009)
Trends Mol Med
, vol.15
, pp. 381-390
-
-
Gandellini, P.1
Folini, M.2
Zaffaroni, N.3
-
12
-
-
7444234286
-
Getting the noise out of gene arrays
-
Marshall E. Getting the noise out of gene arrays. Science 2004;306:630-1.
-
(2004)
Science
, vol.306
, pp. 630-631
-
-
Marshall, E.1
-
13
-
-
1942438016
-
Rules of evidence for cancer molecular-marker discovery and validation
-
Ransohoff DF. Rules of evidence for cancer molecular-marker discovery and validation. Nat Rev Cancer 2004;4:309-14.
-
(2004)
Nat Rev Cancer
, vol.4
, pp. 309-314
-
-
Ransohoff, D.F.1
-
14
-
-
13444283596
-
Bias as a threat to the validity of cancer molecularmarker research
-
Ransohoff DF. Bias as a threat to the validity of cancer molecularmarker research. Nat Rev Cancer 2005;5:142-9.
-
(2005)
Nat Rev Cancer
, vol.5
, pp. 142-149
-
-
Ransohoff, D.F.1
-
15
-
-
13444282534
-
Outcome signature genes in breast cancer: Is there a unique set?
-
Ein-Dor L, Kela I, Getz G, Givol D, Domany E. Outcome signature genes in breast cancer: is there a unique set?Bioinformatics 2005;21:171-8.
-
(2005)
Bioinformatics
, vol.21
, pp. 171-178
-
-
Ein-Dor, L.1
Kela, I.2
Getz, G.3
Givol, D.4
Domany, E.5
-
16
-
-
67649205714
-
Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes
-
Zhang M, Zhang L, Zou J, Yao C, Xiao H, Liu Q, et al. Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes. Bioinformatics 2009;25:1662-8.
-
(2009)
Bioinformatics
, vol.25
, pp. 1662-1668
-
-
Zhang, M.1
Zhang, L.2
Zou, J.3
Yao, C.4
Xiao, H.5
Liu, Q.6
-
17
-
-
78049507670
-
Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis
-
Yao C, Li H, Zhou C, Zhang L, Zou J, Guo Z. Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis. BMC Syst Biol 2010;4:151.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 151
-
-
Yao, C.1
Li, H.2
Zhou, C.3
Zhang, L.4
Zou, J.5
Guo, Z.6
-
18
-
-
0034614637
-
The hallmarks of cancer
-
Hanahan D, Weinberg RA. The hallmarks of cancer. Cell 2000;100:57-70.
-
(2000)
Cell
, vol.100
, pp. 57-70
-
-
Hanahan, D.1
Weinberg, R.A.2
-
19
-
-
31144459985
-
Oncogenic pathway signatures in human cancers as a guide to targeted therapies
-
Bild AH, Yao G, Chang JT, Wang Q, Potti A, Chasse D, et al. Oncogenic pathway signatures in human cancers as a guide to targeted therapies. Nature 2006;439:353-7.
-
(2006)
Nature
, vol.439
, pp. 353-357
-
-
Bild, A.H.1
Yao, G.2
Chang, J.T.3
Wang, Q.4
Potti, A.5
Chasse, D.6
-
20
-
-
54049090778
-
Combinatorial microRNAs: Working together to make a difference
-
Ivanovska I, Cleary MA. Combinatorial microRNAs: working together to make a difference. Cell Cycle 2008;7:3137-42.
-
(2008)
Cell Cycle
, vol.7
, pp. 3137-3142
-
-
Ivanovska, I.1
Cleary, M.A.2
-
21
-
-
33749504736
-
MicroRNAs and the hallmarks of cancer
-
Dalmay T, Edwards DR. MicroRNAs and the hallmarks of cancer. Oncogene 2006;25:6170-5.
-
(2006)
Oncogene
, vol.25
, pp. 6170-6175
-
-
Dalmay, T.1
Edwards, D.R.2
-
22
-
-
33845624889
-
MicroRNAs in biological processes and carcinogenesis
-
Osada H, Takahashi T. MicroRNAs in biological processes and carcinogenesis. Carcinogenesis 2007;28:2-12.
-
(2007)
Carcinogenesis
, vol.28
, pp. 2-12
-
-
Osada, H.1
Takahashi, T.2
-
23
-
-
38349188469
-
Gaining confidence in biological interpretation of the microarray data: The functional consistence of the significant GO categories
-
Yang D, Li Y, Xiao H, Liu Q, Zhang M, Zhu J, et al. Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories. Bioinformatics 2008;24:265-71.
-
(2008)
Bioinformatics
, vol.24
, pp. 265-271
-
-
Yang, D.1
Li, Y.2
Xiao, H.3
Liu, Q.4
Zhang, M.5
Zhu, J.6
-
24
-
-
77949532152
-
Extracting consistent knowledge from highly inconsistent cancer gene data sources
-
Gong X, Wu R, Zhang Y, Zhao W, Cheng L, Gu Y, et al. Extracting consistent knowledge from highly inconsistent cancer gene data sources. BMC Bioinformatics 2010;11:76.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 76
-
-
Gong, X.1
Wu, R.2
Zhang, Y.3
Zhao, W.4
Cheng, L.5
Gu, Y.6
-
25
-
-
73149097935
-
Evaluation of cDNA microarray data by multiple clones mapping to the same transcript
-
Wang D, Wang C, Zhang L, Xiao H, Shen X, Ren L, et al. Evaluation of cDNA microarray data by multiple clones mapping to the same transcript. Omics 2009;13:493-9.
-
(2009)
Omics
, vol.13
, pp. 493-499
-
-
Wang, D.1
Wang, C.2
Zhang, L.3
Xiao, H.4
Shen, X.5
Ren, L.6
-
26
-
-
51749123784
-
Apparently low reproducibility of true differential expression discoveries in microarray studies
-
Zhang M, Yao C, Guo Z, Zou J, Zhang L, Xiao H, et al. Apparently low reproducibility of true differential expression discoveries in microarray studies. Bioinformatics 2008;24:2057-63.
-
(2008)
Bioinformatics
, vol.24
, pp. 2057-2063
-
-
Zhang, M.1
Yao, C.2
Guo, Z.3
Zou, J.4
Zhang, L.5
Xiao, H.6
-
27
-
-
77953888015
-
Prioritization of disease microRNAs through a human phenome-microRNAome network
-
Jiang Q, Hao Y, Wang G, Juan L, Zhang T, Teng M, et al. Prioritization of disease microRNAs through a human phenome-microRNAome network. BMC Syst Biol 2010;4 Suppl 1:S2.
-
(2010)
BMC Syst Biol
, vol.4
, Issue.SUPPL. 1
-
-
Jiang, Q.1
Hao, Y.2
Wang, G.3
Juan, L.4
Zhang, T.5
Teng, M.6
-
28
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are micro- RNA targets
-
Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are micro- RNA targets. Cell 2005;120:15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
29
-
-
38549124383
-
The microRNA.org resource: Targets and expression
-
Betel D, Wilson M, Gabow A, Marks DS, Sander C. The microRNA.org resource: targets and expression. Nucleic Acids Res 2008;36:D149-53.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Betel, D.1
Wilson, M.2
Gabow, A.3
Marks, D.S.4
Sander, C.5
-
30
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek A, Grun D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, et al. Combinatorial microRNA target predictions. Nat Genet 2005;37:495-500.
-
(2005)
Nat Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.J.6
-
31
-
-
55649091427
-
A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions
-
Creighton CJ, Nagaraja AK, Hanash SM, Matzuk MM, Gunaratne PH. A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions. RNA 2008;14:2290-6.
-
(2008)
RNA
, vol.14
, pp. 2290-2296
-
-
Creighton, C.J.1
Nagaraja, A.K.2
Hanash, S.M.3
Matzuk, M.M.4
Gunaratne, P.H.5
-
32
-
-
0034960264
-
Missing value estimation methods for DNA microarrays
-
Troyanskaya O, Cantor M, Sherlock G, Brown P, Hastie T, Tibshirani R, et al. Missing value estimation methods for DNA microarrays. Bioinformatics 2001;17:520-5.
-
(2001)
Bioinformatics
, vol.17
, pp. 520-525
-
-
Troyanskaya, O.1
Cantor, M.2
Sherlock, G.3
Brown, P.4
Hastie, T.5
Tibshirani, R.6
-
33
-
-
60849111385
-
Impact of normalization on miRNA microarray expression profiling
-
Pradervand S, Weber J, Thomas J, Bueno M, Wirapati P, Lefort K, et al. Impact of normalization on miRNA microarray expression profiling. Rna 2009;15:493-501.
-
(2009)
Rna
, vol.15
, pp. 493-501
-
-
Pradervand, S.1
Weber, J.2
Thomas, J.3
Bueno, M.4
Wirapati, P.5
Lefort, K.6
-
34
-
-
33644750115
-
miRBase: MicroRNA sequences, targets and gene nomenclature
-
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 2006;34:D140-4.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
Van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
35
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Stat Soc B 1995;57:289-300.
-
(1995)
J Roy Stat Soc B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
36
-
-
33645825183
-
Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer
-
Ein-Dor L, Zuk O, Domany E. Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer. Proc Natl Acad Sci U S A 2006;103:5923-8.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 5923-5928
-
-
Ein-Dor, L.1
Zuk, O.2
Domany, E.3
-
37
-
-
18244384210
-
Multiple-laboratory comparison of microarray platforms
-
Irizarry RA, Warren D, Spencer F, Kim IF, Biswal S, Frank BC, et al. Multiple-laboratory comparison of microarray platforms. Nat Methods 2005;2:345-50.
-
(2005)
Nat Methods
, vol.2
, pp. 345-350
-
-
Irizarry, R.A.1
Warren, D.2
Spencer, F.3
Kim, I.F.4
Biswal, S.5
Frank, B.C.6
-
38
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000;28:27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
39
-
-
0036051492
-
How many replicates of arrays are required to detect gene expression changes in microarray experiments? A mixture model approach
-
RESEARCH 0022
-
Pan W, Lin J, Le CT. How many replicates of arrays are required to detect gene expression changes in microarray experiments? A mixture model approach. Genome Biol 2002;3:RESEARCH 0022.
-
(2002)
Genome Biol
, vol.3
-
-
Pan, W.1
Lin, J.2
Le, C.T.3
-
40
-
-
51049123624
-
Genomic profiling of microRNA and messenger RNA reveals deregulated microRNA expression in prostate cancer
-
Ambs S, Prueitt RL, Yi M, Hudson RS, Howe TM, Petrocca F, et al. Genomic profiling of microRNA and messenger RNA reveals deregulated microRNA expression in prostate cancer. Cancer Res 2008;68:6162-70.
-
(2008)
Cancer Res
, vol.68
, pp. 6162-6170
-
-
Ambs, S.1
Prueitt, R.L.2
Yi, M.3
Hudson, R.S.4
Howe, T.M.5
Petrocca, F.6
-
41
-
-
60149087720
-
MicroRNA profile analysis of human prostate cancers
-
Tong AW, Fulgham P, Jay C, Chen P, Khalil I, Liu S, et al. MicroRNA profile analysis of human prostate cancers. Cancer Gene Ther 2009;16:206-16.
-
(2009)
Cancer Gene Ther
, vol.16
, pp. 206-216
-
-
Tong, A.W.1
Fulgham, P.2
Jay, C.3
Chen, P.4
Khalil, I.5
Liu, S.6
-
42
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek D, Villen J, Shin C, Camargo FD, Gygi SP, Bartel DP. The impact of microRNAs on protein output. Nature 2008;455:64-71.
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villen, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
Bartel, D.P.6
-
43
-
-
41349092509
-
Multilevel regulation of gene expression by microRNAs
-
Makeyev EV, Maniatis T. Multilevel regulation of gene expression by microRNAs. Science 2008;319:1789-90.
-
(2008)
Science
, vol.319
, pp. 1789-1790
-
-
Makeyev, E.V.1
Maniatis, T.2
-
44
-
-
60849130963
-
Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information
-
Joung JG, Fei Z. Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information. BMC Bioinformatics 2009;10 Suppl 1:S34.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.SUPPL. 1
-
-
Joung, J.G.1
Fei, Z.2
-
45
-
-
67649382719
-
Discovery of functional miRNA-mRNA regulatory modules with computational methods
-
Liu B, Li J, Tsykin A. Discovery of functional miRNA-mRNA regulatory modules with computational methods. J Biomed Inform 2009;42:685-91.
-
(2009)
J Biomed Inform
, vol.42
, pp. 685-691
-
-
Liu, B.1
Li, J.2
Tsykin, A.3
-
46
-
-
67649831704
-
Tissue and process specific microRNA-mRNA coexpression in mammalian development and malignancy
-
Liu H, Kohane IS. Tissue and process specific microRNA-mRNA coexpression in mammalian development and malignancy. PLoS One 2009;4:e5436.
-
(2009)
PLoS One
, vol.4
-
-
Liu, H.1
Kohane, I.S.2
-
48
-
-
20044395613
-
RAS is regulated by the let-7 microRNA family
-
Johnson SM, Grosshans H, Shingara J, Byrom M, Jarvis R, Cheng A, et al. RAS is regulated by the let-7 microRNA family. Cell 2005;120:635-47.
-
(2005)
Cell
, vol.120
, pp. 635-647
-
-
Johnson, S.M.1
Grosshans, H.2
Shingara, J.3
Byrom, M.4
Jarvis, R.5
Cheng, A.6
-
49
-
-
77952584924
-
Targeting microRNAs with small molecules: From dream to reality
-
Zhang S, Chen L, Jung EJ, Calin GA. Targeting microRNAs with small molecules: from dream to reality. Clin Pharmacol Ther 2010;87:754-8.
-
(2010)
Clin Pharmacol Ther
, vol.87
, pp. 754-758
-
-
Zhang, S.1
Chen, L.2
Jung, E.J.3
Calin, G.A.4
|